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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281208 (134 seq.)
>W1711068999
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
344
419
+
Met
CAT
[ENA]
¡û
>W1711069006
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
1049
1124
+
Met
CAT
[ENA]
¡û
>W131196440
ASTI01000008
Bacillota
Latilactobacillus sakei subsp. sakei LS25 [ASTI]
266
341
+
Met
CAT
[ENA]
¡û
>W131196447
ASTI01000008
Bacillota
Latilactobacillus sakei subsp. sakei LS25 [ASTI]
971
1046
+
Met
CAT
[ENA]
¡û
>W1711484744
MKDC01000037
Bacillota
Latilactobacillus sakei [MKDC]
265
340
+
Met
CAT
[ENA]
¡û
>W1711484751
MKDC01000037
Bacillota
Latilactobacillus sakei [MKDC]
970
1045
+
Met
CAT
[ENA]
¡û
>W1711484797
MKDD01000022
Bacillota
Latilactobacillus sakei [MKDD]
18665
18590
-
Met
CAT
[ENA]
¡û
>W1711484804
MKDD01000022
Bacillota
Latilactobacillus sakei [MKDD]
17960
17885
-
Met
CAT
[ENA]
¡û
>W1711484831
MKDE01000010
Bacillota
Latilactobacillus sakei [MKDE]
983
1058
+
Met
CAT
[ENA]
¡û
>W1711484838
MKDE01000010
Bacillota
Latilactobacillus sakei [MKDE]
1688
1763
+
Met
CAT
[ENA]
¡û
>W1711484948
MKDG01000043
Bacillota
Latilactobacillus curvatus [MKDG]
30
105
+
Met
CAT
[ENA]
¡û
>W1711485055
MKDJ01000020
Bacillota
Latilactobacillus sakei [MKDJ]
495
570
+
Met
CAT
[ENA]
¡û
>W1711485222
MKDR01000002
Bacillota
Latilactobacillus curvatus [MKDR]
10
85
+
Met
CAT
[ENA]
¡û
>W1711487513
MKGB01000033
Bacillota
Latilactobacillus sakei [MKGB]
298
373
+
Met
CAT
[ENA]
¡û
>W1711487520
MKGB01000033
Bacillota
Latilactobacillus sakei [MKGB]
1003
1078
+
Met
CAT
[ENA]
¡û
>C012613
CR936503
Bacillota
Latilactobacillus sakei subsp. sakei 23K [CR936503]
451421
451494
+
Met
CAT
[Ensembl]
¡û
>C012620
CR936503
Bacillota
Latilactobacillus sakei subsp. sakei 23K [CR936503]
452128
452201
+
Met
CAT
[Ensembl]
¡û
>C171057554
CP017124
Bacillota
Latilactobacillus curvatus WiKim38 [CP017124]
1553358
1553283
-
Met
CAT
-
¡û
>C171057561
CP017124
Bacillota
Latilactobacillus curvatus WiKim38 [CP017124]
1552649
1552574
-
Met
CAT
-
¡û
>W141228362
BALW01000016
Bacillota
Latilactobacillus sakei subsp. sakei JCM 1157 [BALW]
27325
27250
-
Met
CAT
[ENA]
¡û
>W141228369
BALW01000016
Bacillota
Latilactobacillus sakei subsp. sakei JCM 1157 [BALW]
26620
26545
-
Met
CAT
[ENA]
¡û
>C181003643
AP017929
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 LT-13 [AP017929]
27335
27260
-
Met
CAT
-
¡û
>C181003650
AP017929
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 LT-13 [AP017929]
26630
26555
-
Met
CAT
-
¡û
>C181003696
AP017931
Bacillota
Latilactobacillus sakei LK-145 [AP017931]
1454518
1454443
-
Met
CAT
-
¡û
>C181003703
AP017931
Bacillota
Latilactobacillus sakei LK-145 [AP017931]
1453813
1453738
-
Met
CAT
-
¡û
>C181044604
CP020459
Bacillota
Latilactobacillus sakei FAM18311 [CP020459]
451107
451182
+
Met
CAT
-
¡û
>C181044611
CP020459
Bacillota
Latilactobacillus sakei FAM18311 [CP020459]
451812
451887
+
Met
CAT
-
¡û
>C181066089
CP022474
Bacillota
Latilactobacillus curvatus MRS6 [CP022474]
1626060
1625985
-
Met
CAT
-
¡û
>C181066096
CP022474
Bacillota
Latilactobacillus curvatus MRS6 [CP022474]
1625351
1625276
-
Met
CAT
-
¡û
>C181066156
CP022475
Bacillota
Latilactobacillus curvatus KG6 [CP022475]
1621664
1621589
-
Met
CAT
-
¡û
>C181066163
CP022475
Bacillota
Latilactobacillus curvatus KG6 [CP022475]
1620954
1620879
-
Met
CAT
-
¡û
>C181071467
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
4186
4261
+
Met
CAT
-
¡û
>C181071474
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
4891
4966
+
Met
CAT
-
¡û
>C181113646
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
1326125
1326200
+
Met
CAT
-
¡û
>C181113653
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
1326830
1326905
+
Met
CAT
-
¡û
>C181114104
CP025206
Bacillota
Latilactobacillus sakei WiKim0074 [CP025206]
640552
640477
-
Met
CAT
-
¡û
>C181114111
CP025206
Bacillota
Latilactobacillus sakei WiKim0074 [CP025206]
639847
639772
-
Met
CAT
-
¡û
>C181123526
CP025839
Bacillota
Latilactobacillus sakei DS4 [CP025839]
491465
491540
+
Met
CAT
-
¡û
>C181123533
CP025839
Bacillota
Latilactobacillus sakei DS4 [CP025839]
492172
492247
+
Met
CAT
-
¡û
>C181186086
CP029966
Bacillota
Latilactobacillus curvatus ZJUNIT8 [CP029966]
1506161
1506086
-
Met
CAT
-
¡û
>C181186093
CP029966
Bacillota
Latilactobacillus curvatus ZJUNIT8 [CP029966]
1505452
1505377
-
Met
CAT
-
¡û
>C181194830
CP031003
Bacillota
Latilactobacillus curvatus TMW 1.1928 [CP031003]
1640427
1640352
-
Met
CAT
-
¡û
>C181194837
CP031003
Bacillota
Latilactobacillus curvatus TMW 1.1928 [CP031003]
1639717
1639642
-
Met
CAT
-
¡û
>C181227414
LT960777
Bacillota
Latilactobacillus sakei FLEC01 [LT960777]
472231
472306
+
Met
CAT
-
¡û
>C181227421
LT960777
Bacillota
Latilactobacillus sakei FLEC01 [LT960777]
472930
473005
+
Met
CAT
-
¡û
>C181227470
LT960781
Bacillota
Latilactobacillus sakei J64 [LT960781]
490097
490172
+
Met
CAT
-
¡û
>C181227477
LT960781
Bacillota
Latilactobacillus sakei J64 [LT960781]
490802
490877
+
Met
CAT
-
¡û
>C181227533
LT960784
Bacillota
Latilactobacillus sakei [LT960784]
483578
483653
+
Met
CAT
-
¡û
>C181227540
LT960784
Bacillota
Latilactobacillus sakei [LT960784]
484285
484360
+
Met
CAT
-
¡û
>C181227594
LT960788
Bacillota
Latilactobacillus sakei MFPB16A1401 [LT960788]
493632
493707
+
Met
CAT
-
¡û
>C181227601
LT960788
Bacillota
Latilactobacillus sakei MFPB16A1401 [LT960788]
494339
494414
+
Met
CAT
-
¡û
>C181227655
LT960790
Bacillota
Latilactobacillus sakei J54 [LT960790]
472594
472669
+
Met
CAT
-
¡û
>C181227662
LT960790
Bacillota
Latilactobacillus sakei J54 [LT960790]
473293
473368
+
Met
CAT
-
¡û
>C191004202
AP018699
Bacillota
Latilactobacillus curvatus NFH-Km12 [AP018699]
1546088
1546013
-
Met
CAT
-
¡û
>C191004209
AP018699
Bacillota
Latilactobacillus curvatus NFH-Km12 [AP018699]
1545378
1545303
-
Met
CAT
-
¡û
>C191035486
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
427939
428014
+
Met
CAT
-
¡û
>C191035493
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
428649
428724
+
Met
CAT
-
¡û
>C191040471
CP026116
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [CP026116]
4040
4115
+
Met
CAT
-
¡û
>C191040478
CP026116
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [CP026116]
4749
4824
+
Met
CAT
-
¡û
>C191092622
CP032633
Bacillota
Latilactobacillus sakei ZFM220 [CP032633]
834671
834746
+
Met
CAT
-
¡û
>C191092629
CP032633
Bacillota
Latilactobacillus sakei ZFM220 [CP032633]
835376
835451
+
Met
CAT
-
¡û
>C191092685
CP032635
Bacillota
Latilactobacillus sakei ZFM225 [CP032635]
520352
520427
+
Met
CAT
-
¡û
>C191092692
CP032635
Bacillota
Latilactobacillus sakei ZFM225 [CP032635]
521057
521132
+
Met
CAT
-
¡û
>C191092805
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
370496
370571
+
Met
CAT
-
¡û
>C191092812
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
371201
371276
+
Met
CAT
-
¡û
>C191093016
CP032652
Bacillota
Latilactobacillus sakei LZ217 [CP032652]
1326370
1326295
-
Met
CAT
-
¡û
>C191093023
CP032652
Bacillota
Latilactobacillus sakei LZ217 [CP032652]
1325665
1325590
-
Met
CAT
-
¡û
>C191134878
CP035110
Bacillota
Latilactobacillus curvatus SRCM103465 [CP035110]
1619271
1619196
-
Met
CAT
-
¡û
>C191134885
CP035110
Bacillota
Latilactobacillus curvatus SRCM103465 [CP035110]
1618561
1618486
-
Met
CAT
-
¡û
>W1910751943
MKDM01000022
Bacillota
Latilactobacillus sakei RI-496 [MKDM]
4676
4601
-
Met
CAT
[ENA]
¡û
>W1910751977
MKDN01000033
Bacillota
Latilactobacillus sakei RI-499 [MKDN]
672
747
+
Met
CAT
[ENA]
¡û
>W1910752002
MKDO01000010
Bacillota
Latilactobacillus sakei RI-500 [MKDO]
27369
27294
-
Met
CAT
[ENA]
¡û
>W1910752009
MKDO01000010
Bacillota
Latilactobacillus sakei RI-500 [MKDO]
26664
26589
-
Met
CAT
[ENA]
¡û
>W1910753020
MKGG01000056
Bacillota
Latilactobacillus sakei RI-516 [MKGG]
264
339
+
Met
CAT
[ENA]
¡û
>W1910753027
MKGG01000056
Bacillota
Latilactobacillus sakei RI-516 [MKGG]
969
1044
+
Met
CAT
[ENA]
¡û
>W1910753056
MKGH01000042
Bacillota
Latilactobacillus sakei RI-517 [MKGH]
25675
25600
-
Met
CAT
[ENA]
¡û
>W1911493452
OBHL01000008
Bacillota
Latilactobacillus sakei J156 [OBHL]
343
418
+
Met
CAT
[ENA]
¡û
>W1911493459
OBHL01000008
Bacillota
Latilactobacillus sakei J156 [OBHL]
1048
1123
+
Met
CAT
[ENA]
¡û
>W1911533900
OKRC01000014
Bacillota
Latilactobacillus sakei CECT 9267 [OKRC]
27463
27388
-
Met
CAT
[ENA]
¡û
>W1911533907
OKRC01000014
Bacillota
Latilactobacillus sakei CECT 9267 [OKRC]
26758
26683
-
Met
CAT
[ENA]
¡û
>W1911551504
OVTU01000006
Bacillota
Latilactobacillus sakei CECT 9624 [OVTU]
372
447
+
Met
CAT
[ENA]
¡û
>W1911551511
OVTU01000006
Bacillota
Latilactobacillus sakei CECT 9624 [OVTU]
1077
1152
+
Met
CAT
[ENA]
¡û
>W1911631461
PUFE01000020
Bacillota
Latilactobacillus sakei subsp. sakei ATCC 15521 [PUFE]
901
976
+
Met
CAT
[ENA]
¡û
>W1911706061
QOSE01000022
Bacillota
Latilactobacillus sakei TMW 1.411 [QOSE]
27317
27242
-
Met
CAT
[ENA]
¡û
>W1911706068
QOSE01000022
Bacillota
Latilactobacillus sakei TMW 1.411 [QOSE]
26612
26537
-
Met
CAT
[ENA]
¡û
>WENV11100300
AEKF01000039
Food metagenome, Jonggazip commercial cabbage kimchi
245
320
+
Met
CAT
[ENA]
¡û
>WENV11100307
AEKF01000039
Food metagenome, Jonggazip commercial cabbage kimchi
950
1025
+
Met
CAT
[ENA]
¡û
>W1511344740
JRFY01000147
Bacillota
Latilactobacillus sakei wikim 22 [JRFY]
96
21
-
Met
CAT
[ENA]
¡û
>W1511344749
JRFY01000151
Bacillota
Latilactobacillus sakei wikim 22 [JRFY]
95
20
-
Met
CAT
[ENA]
¡û
>W1511402285
JTJV01000059
Bacillota
Latilactobacillus curvatus NRIC0822 [JTJV]
10
85
+
Met
CAT
[ENA]
¡û
>W1511402309
JTJV01000136
Bacillota
Latilactobacillus curvatus NRIC0822 [JTJV]
302
377
+
Met
CAT
[ENA]
¡û
>W1511402316
JTJV01000136
Bacillota
Latilactobacillus curvatus NRIC0822 [JTJV]
1012
1087
+
Met
CAT
[ENA]
¡û
>C161093438
CP016028
Bacillota
Latilactobacillus curvatus FBA2 [CP016028]
482515
482590
+
Met
CAT
-
¡û
>C161093445
CP016028
Bacillota
Latilactobacillus curvatus FBA2 [CP016028]
483224
483299
+
Met
CAT
-
¡û
>C161100147
CP016602
Bacillota
Latilactobacillus curvatus WiKim52 [CP016602]
576759
576834
+
Met
CAT
[Ensembl]
¡û
>C161100154
CP016602
Bacillota
Latilactobacillus curvatus WiKim52 [CP016602]
577468
577543
+
Met
CAT
[Ensembl]
¡û
>W121008317
AGBU01000098
Bacillota
Latilactobacillus curvatus CRL 705 [AGBU]
246
321
+
Met
CAT
[ENA]
¡û
>W121008324
AGBU01000098
Bacillota
Latilactobacillus curvatus CRL 705 [AGBU]
955
1030
+
Met
CAT
[ENA]
¡û
>W1610030875
AYYI01000103
Bacillota
Loigolactobacillus rennini DSM 20253 [AYYI]
67566
67491
-
Met
CAT
[ENA]
¡û
>W1610030882
AYYI01000103
Bacillota
Loigolactobacillus rennini DSM 20253 [AYYI]
66803
66728
-
Met
CAT
[ENA]
¡û
>W1610031124
AYYO01000050
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [AYYO]
647
722
+
Met
CAT
[ENA]
¡û
>W1610031131
AYYO01000050
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [AYYO]
1349
1424
+
Met
CAT
[ENA]
¡û
>W1610031741
AYZB01000052
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
20556
20481
-
Met
CAT
[ENA]
¡û
>W1610031754
AYZB01000054
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
10
85
+
Met
CAT
[ENA]
¡û
>W1610034179
AZDN01000033
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
525
450
-
Met
CAT
[ENA]
¡û
>W1610035958
AZEX01000066
Bacillota
Latilactobacillus fuchuensis DSM 14340 = JCM 11249 [AZEX]
292
367
+
Met
CAT
[ENA]
¡û
>W1610035965
AZEX01000066
Bacillota
Latilactobacillus fuchuensis DSM 14340 = JCM 11249 [AZEX]
999
1074
+
Met
CAT
[ENA]
¡û
>W1610035973
AZEX01000067
Bacillota
Latilactobacillus fuchuensis DSM 14340 = JCM 11249 [AZEX]
8
83
+
Met
CAT
[ENA]
¡û
>W1610036388
AZFG01000056
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
10
85
+
Met
CAT
[ENA]
¡û
>W1610036406
AZFG01000065
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
302
377
+
Met
CAT
[ENA]
¡û
>W1610036412
AZFG01000065
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
990
1065
+
Met
CAT
[ENA]
¡û
>W1610043859
BBAC01000014
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [BBAC]
606
681
+
Met
CAT
[ENA]
¡û
>W1610043866
BBAC01000014
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [BBAC]
1307
1382
+
Met
CAT
[ENA]
¡û
>W1610045568
BBBQ01000058
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
246
321
+
Met
CAT
[ENA]
¡û
>W1610045575
BBBQ01000058
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
955
1030
+
Met
CAT
[ENA]
¡û
>W1610909569
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
344
419
+
Met
CAT
[ENA]
¡û
>W1610909576
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
1049
1124
+
Met
CAT
[ENA]
¡û
>W1710027827
AYYI01000103
Bacillota
Loigolactobacillus rennini DSM 20253 [AYYI]
67566
67491
-
Met
CAT
[ENA]
¡û
>W1710027834
AYYI01000103
Bacillota
Loigolactobacillus rennini DSM 20253 [AYYI]
66803
66728
-
Met
CAT
[ENA]
¡û
>W1710028076
AYYO01000050
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [AYYO]
647
722
+
Met
CAT
[ENA]
¡û
>W1710028083
AYYO01000050
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [AYYO]
1349
1424
+
Met
CAT
[ENA]
¡û
>W1710028668
AYZB01000052
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
20556
20481
-
Met
CAT
[ENA]
¡û
>W1710028681
AYZB01000054
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
10
85
+
Met
CAT
[ENA]
¡û
>W1710031306
AZDN01000033
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
525
450
-
Met
CAT
[ENA]
¡û
>W1710032997
AZEX01000066
Bacillota
Latilactobacillus fuchuensis DSM 14340 = JCM 11249 [AZEX]
292
367
+
Met
CAT
[ENA]
¡û
>W1710033004
AZEX01000066
Bacillota
Latilactobacillus fuchuensis DSM 14340 = JCM 11249 [AZEX]
999
1074
+
Met
CAT
[ENA]
¡û
>W1710033012
AZEX01000067
Bacillota
Latilactobacillus fuchuensis DSM 14340 = JCM 11249 [AZEX]
8
83
+
Met
CAT
[ENA]
¡û
>W1710033427
AZFG01000056
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
10
85
+
Met
CAT
[ENA]
¡û
>W1710033445
AZFG01000065
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
302
377
+
Met
CAT
[ENA]
¡û
>W1710033451
AZFG01000065
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
990
1065
+
Met
CAT
[ENA]
¡û
>W1710041019
BBAC01000014
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [BBAC]
606
681
+
Met
CAT
[ENA]
¡û
>W1710041026
BBAC01000014
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [BBAC]
1307
1382
+
Met
CAT
[ENA]
¡û
>W1710042409
BBBQ01000058
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
246
321
+
Met
CAT
[ENA]
¡û
>W1710042416
BBBQ01000058
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
955
1030
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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