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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281214 (27 seq.)
>W1711179123
LWHJ01000011
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
74071
74144
+
Gly
TCC
[ENA]
¡û
>W131165390
ARBN01000009
Bacteroidota
Cytophaga aurantiaca DSM 3654 [ARBN]
176828
176755
-
Gly
TCC
[ENA]
¡û
>C171057635
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
3285335
3285410
+
Gly
TCC
-
¡û
>C171089491
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
1444741
1444816
+
Gly
TCC
-
¡û
>C005847
CP000383
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 [CP000383]
3615655
3615580
-
Gly
TCC
[Ensembl]
¡û
>WENV180021042
FTDL01000120
[FTDL] metagenome; soil
16449
16522
+
Gly
TCC
[ENA]
¢þ
>W141027915
AKZJ01000001
Bacteroidota
Pedobacter arcticus A12 [AKZJ]
495771
495844
+
Gly
TCC
[ENA]
¡û
>w002443
AABD03000003
Bacteroidota
Cytophaga hutchinsonii [AABD]
117511
117439
-
Gly
TCC
[ENA]
¡û
>W141075085
ASZT01000697
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
14034
13959
-
Gly
TCC
[ENA]
¡û
>W141727648
JNFF01000112
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
2178
2251
+
Gly
TCC
[ENA]
¡û
>W1910237087
FPJX01000011
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 DSM 1761 [FPJX]
138624
138697
+
Gly
TCC
[ENA]
¡û
>W1911647394
QAJL01000002
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
252928
252855
-
Gly
TCC
[ENA]
¡û
>W1810693896
QLLR01000017
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
52848
52921
+
Gly
TCC
[ENA]
¡û
>C151047337
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
897740
897815
+
Gly
TCC
[Ensembl]
¡û
>W1511509404
JXRA01000012
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
4847
4774
-
Gly
TCC
[ENA]
¡û
>C161049157
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
5431977
5431902
-
Gly
TCC
[Ensembl]
¡û
>C161073039
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
4084334
4084261
-
Gly
TCC
[Ensembl]
¡û
>C161077152
CP014773
Bacteroidota
Mucilaginibacter sp. PAMC 26640 [CP014773]
2306400
2306473
+
Gly
TCC
[Ensembl]
¡û
>W1610987075
LWHJ01000011
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
74071
74144
+
Gly
TCC
[ENA]
¡û
>W1710512312
FMZH01000023
Bacteroidota
Pedobacter soli [FMZH]
10972
11047
+
Gly
TCC
[ENA]
¡û
>W1710519689
FNEX01000016
Bacteroidota
Pedobacter sp. ok626 [FNEX]
160521
160596
+
Gly
TCC
[ENA]
¡û
>W1710522105
FNGY01000013
Bacteroidota
Pedobacter steynii [FNGY]
9589
9664
+
Gly
TCC
[ENA]
¡û
>W1710522138
FNGZ01000003
Bacteroidota
Pedobacter antarcticus [FNGZ]
501009
501082
+
Gly
TCC
[ENA]
¡û
>W1710533316
FNRA01000011
Bacteroidota
Pedobacter hartonius [FNRA]
115617
115690
+
Gly
TCC
[ENA]
¡û
>W1710560889
FONS01000013
Bacteroidota
Pedobacter antarcticus [FONS]
102861
102788
-
Gly
TCC
[ENA]
¡û
>W1710563352
FOPP01000006
Bacteroidota
Pedobacter insulae [FOPP]
131481
131408
-
Gly
TCC
[ENA]
¡û
>W1710583251
FQUQ01000003
Bacteroidota
Pedobacter caeni [FQUQ]
889900
889975
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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