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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281249 (61 seq.)
>W1710944389
LOQS01000019
Actinomycetota
Corynebacterium glutamicum [LOQS]
66153
66228
+
Thr
CGT
[ENA]
¡û
>W1710944435
LOQT01000014
Actinomycetota
Corynebacterium glutamicum [LOQT]
10017
9942
-
Thr
CGT
[ENA]
¡û
>W1710944524
LOQV01000022
Actinomycetota
Corynebacterium glutamicum [LOQV]
170612
170537
-
Thr
CGT
[ENA]
¡û
>W1710944571
LOQW01000016
Actinomycetota
Corynebacterium glutamicum [LOQW]
10017
9942
-
Thr
CGT
[ENA]
¡û
>W1710944661
LOQX01000056
Actinomycetota
Corynebacterium glutamicum [LOQX]
62449
62374
-
Thr
CGT
[ENA]
¡û
>W1710944686
LOQY01000083
Actinomycetota
Corynebacterium glutamicum [LOQY]
2942
2867
-
Thr
CGT
[ENA]
¡û
>W1711095115
LTGN01000027
Actinomycetota
Corynebacterium sp. HMSC063F04 [LTGN]
9128
9201
+
Thr
CGT
[ENA]
¡û
>W1711097002
LTIG01000044
Actinomycetota
Corynebacterium sp. HMSC077G01 [LTIG]
51899
51826
-
Thr
CGT
[ENA]
¡û
>W1711112766
LTXS01000007
Actinomycetota
Corynebacterium sp. HMSC065H09 [LTXS]
26205
26278
+
Thr
CGT
[ENA]
¡û
>C171074389
CP018175
Actinomycetota
Corynebacterium glutamicum XV [CP018175]
378827
378902
+
Thr
CGT
-
¡û
>C171111105
CP020658
Actinomycetota
Corynebacterium glutamicum TQ2223 [CP020658]
2406100
2406025
-
Thr
CGT
-
¡û
>W131165352
ARBM01000004
Actinomycetota
Corynebacterium caspium DSM 44850 [ARBM]
235455
235530
+
Thr
CGT
[ENA]
¡û
>W131156390
AQPS01000018
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
71267
71342
+
Thr
CGT
[ENA]
¡û
>W131215711
ATVF01000008
Actinomycetota
Corynebacterium callunae DSM 20147 [ATVF]
35575
35500
-
Thr
CGT
[ENA]
¡û
>C005666
BA000036
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [BA000036]
329629
329704
+
Thr
CGT
[Ensembl]
¡û
>C005726
BX927147
Actinomycetota
Corynebacterium glutamicum [BX927147]
329630
329705
+
Thr
CGT
[Ensembl]
¡û
>C005786
AP009044
Actinomycetota
Corynebacterium glutamicum R [AP009044]
434770
434845
+
Thr
CGT
[Ensembl]
¡û
>W141026574
AKXP01000008
Actinomycetota
Corynebacterium glutamicum Z188 [AKXP]
71267
71342
+
Thr
CGT
[ENA]
¡û
>WENV180504527
OCAN01005400
[OCAN] human gut metagenome; faeces
2232
2305
+
Thr
CGT
[ENA]
¢þ
>WENV183511409
OMJG01000219
[OMJG] food metagenome; Cotija cheese
11751
11824
+
Thr
CGT
[ENA]
¢þ
>C181001593
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
471488
471563
+
Thr
CGT
-
¡û
>C181002207
AP017557
Actinomycetota
Corynebacterium glutamicum AJ1511 [AP017557]
379160
379235
+
Thr
CGT
-
¡û
>C181029616
CP017995
Actinomycetota
Corynebacterium glutamicum C1 [CP017995]
327969
328044
+
Thr
CGT
-
¡û
>C181064180
CP022394
Actinomycetota
Corynebacterium glutamicum WM001 [CP022394]
3226109
3226184
+
Thr
CGT
-
¡û
>C181069954
CP022614
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [CP022614]
375720
375793
+
Thr
CGT
-
¡û
>C181109983
CP024988
Actinomycetota
Corynebacterium provencense 17KM38 [CP024988]
568932
569007
+
Thr
CGT
-
¡û
>C181118417
CP025533
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [CP025533]
331361
331436
+
Thr
CGT
-
¡û
>C181118481
CP025534
Actinomycetota
Corynebacterium glutamicum HA [CP025534]
1110782
1110857
+
Thr
CGT
-
¡û
>C181144741
CP027001
Actinomycetota
Corynebacterium camporealensis CIP 105508 [CP027001]
208788
208863
+
Thr
CGT
-
¡û
>C191111885
CP033784
Actinomycetota
Corynebacterium jeikeium FDAARGOS_574 [CP033784]
334251
334324
+
Thr
CGT
-
¡û
>W141800898
JPDH01000025
Actinomycetota
Corynebacterium glutamicum crenatum [JPDH]
9995
9920
-
Thr
CGT
[ENA]
¡û
>W1910001224
APJJ01000003
Actinomycetota
Corynebacterium glutamicum ZL-2 [APJJ]
18956
19031
+
Thr
CGT
[ENA]
¡û
>W1910374184
FUIB01000016
Actinomycetota
Corynebacterium glutamicum B Co 03.31 [FUIB]
230021
230096
+
Thr
CGT
[ENA]
¡û
>C141004132
CP005959
Actinomycetota
Corynebacterium glutamicum MB001 [CP005959]
329607
329682
+
Thr
CGT
[Ensembl]
¡û
>W1910438302
FWCI01000014
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
33227
33302
+
Thr
CGT
[ENA]
¡û
>W1910572999
JOLA01000002
Actinomycetota
Corynebacterium glutamicum 1006 [JOLA]
73765
73840
+
Thr
CGT
[ENA]
¡û
>C151032986
CP007722
Actinomycetota
Corynebacterium glutamicum ATCC 21831 [CP007722]
362456
362531
+
Thr
CGT
[Ensembl]
¡û
>C151033046
CP007724
Actinomycetota
Corynebacterium glutamicum AR1 [CP007724]
362462
362537
+
Thr
CGT
[Ensembl]
¡û
>C151045665
CP009220
Actinomycetota
Corynebacterium deserti GIMN1.010 [CP009220]
336673
336748
+
Thr
CGT
-
¡û
>C151069882
CP010451
Actinomycetota
Corynebacterium glutamicum B253 [CP010451]
348188
348263
+
Thr
CGT
[Ensembl]
¡û
>C151079589
CP011309
Actinomycetota
[Brevibacterium] flavum ATCC 15168 [CP011309]
375723
375798
+
Thr
CGT
[Ensembl]
¡û
>C151079695
CP011311
Actinomycetota
Corynebacterium camporealensis DSM 44610 [CP011311]
208809
208884
+
Thr
CGT
[Ensembl]
¡û
>W1511356316
JRUB01000006
Actinomycetota
Corynebacterium camporealensis CIP 105508 [JRUB]
192363
192288
-
Thr
CGT
[ENA]
¡û
>W1511500667
JXBH01000003
Actinomycetota
Corynebacterium glutamicum SYPS-062 [JXBH]
177550
177625
+
Thr
CGT
[ENA]
¡û
>W1511524451
JYEG01000004
Actinomycetota
Corynebacterium glutamicum SYPS-062-33a [JYEG]
10642
10567
-
Thr
CGT
[ENA]
¡û
>W11176879
AFYA01000008
Actinomycetota
Corynebacterium glutamicum S9114 [AFYA]
107188
107263
+
Thr
CGT
[ENA]
¡û
>C161003030
CP004046
Actinomycetota
[Brevibacterium] flavum ZL-1 [CP004046]
381593
381668
+
Thr
CGT
-
¡û
>C161003089
CP004062
Actinomycetota
Corynebacterium glutamicum ZL-6 [CP004062]
381624
381699
+
Thr
CGT
-
¡û
>C161040433
CP012194
Actinomycetota
Corynebacterium glutamicum CP [CP012194]
414883
414958
+
Thr
CGT
-
¡û
>C161063642
CP013991
Actinomycetota
Corynebacterium glutamicum USDA-ARS-USMARC-56828 [CP013991]
396076
396151
+
Thr
CGT
[Ensembl]
¡û
>C161081117
CP014984
Actinomycetota
Corynebacterium glutamicum YI [CP014984]
374112
374187
+
Thr
CGT
-
¡û
>C161096060
CP016335
Actinomycetota
Corynebacterium glutamicum ATCC 13869 [CP016335]
377544
377619
+
Thr
CGT
-
¡û
>W121016295
AGQQ01000036
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [AGQQ]
62396
62321
-
Thr
CGT
[ENA]
¡û
>W1610419434
FIZC01000015
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
50346
50271
-
Thr
CGT
[ENA]
¡û
>C131005340
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
2356896
2356821
-
Thr
CGT
[Ensembl]
¡û
>C131012014
CP004047
Actinomycetota
Corynebacterium glutamicum SCgG1 [CP004047]
420148
420223
+
Thr
CGT
[Ensembl]
¡û
>C131012074
CP004048
Actinomycetota
Corynebacterium glutamicum SCgG2 [CP004048]
420149
420224
+
Thr
CGT
[Ensembl]
¡û
>C131013462
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
304301
304376
+
Thr
CGT
[Ensembl]
¡û
>C131019739
HE802067
Actinomycetota
Corynebacterium glutamicum K051 ATCC 13032 [HE802067]
329629
329704
+
Thr
CGT
[Ensembl]
¡û
>W1710039843
BAYH01000008
Actinomycetota
Corynebacterium glutamicum [BAYH]
145832
145907
+
Thr
CGT
[ENA]
¡û
>W1710419170
FIZC01000015
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
50346
50271
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK