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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281303 (96 seq.)
>W1711791659
MWJB01000068
Bacillota
Clostridium botulinum [MWJB]
17587
17662
+
Lys
CTT
[ENA]
¡û
>W1711791761
MWJC01000088
Bacillota
Clostridium botulinum [MWJC]
3329
3404
+
Lys
CTT
[ENA]
¡û
>W1711791970
MWJG01000012
Bacillota
Clostridium botulinum [MWJG]
109282
109357
+
Lys
CTT
[ENA]
¡û
>C171059515
CP017253
Bacillota
Clostridium taeniosporum 1/k [CP017253]
394908
394983
+
Lys
CTT
-
¡û
>W131194992
ASRV01000019
Bacillota
Clostridium sartagoforme AAU1 [ASRV]
16082
16007
-
Lys
CTT
[ENA]
¡û
>W131195042
ASRV01000253
Bacillota
Clostridium sartagoforme AAU1 [ASRV]
3818
3743
-
Lys
CTT
[ENA]
¡û
>WENV180153225
OAUR01011907
[OAUR] human gut metagenome; faeces
84
9
-
Lys
CTT
[ENA]
¢þ
>WENV180180659
OAWL01000265
[OAWL] human gut metagenome; faeces
7277
7352
+
Lys
CTT
[ENA]
¢þ
>WENV180180684
OAWL01000645
[OAWL] human gut metagenome; faeces
1300
1225
-
Lys
CTT
[ENA]
¢þ
>WENV180415560
OBVE01009136
[OBVE] human gut metagenome; faeces
133
58
-
Lys
CTT
[ENA]
¢þ
>W141039768
ALYJ01000038
Bacillota
Clostridium botulinum CDC66177 [ALYJ]
1786
1711
-
Lys
CTT
[ENA]
¡û
>WENV180421970
OBVS01000026
[OBVS] human gut metagenome; faeces
70092
70017
-
Lys
CTT
[ENA]
¢þ
>WENV180422201
OBVS01000863
[OBVS] human gut metagenome; faeces
4004
3929
-
Lys
CTT
[ENA]
¢þ
>WENV180497715
OCAE01034740
[OCAE] human gut metagenome; faeces
168
93
-
Lys
CTT
[ENA]
¢þ
>WENV180760626
ODHZ01001489
[ODHZ] human metagenome; G_DNA_Stool
23939
23864
-
Lys
CTT
[ENA]
¢þ
>WENV180761500
ODHZ01013295
[ODHZ] human metagenome; G_DNA_Stool
341
416
+
Lys
CTT
[ENA]
¢þ
>WENV180762502
ODHZ01166077
[ODHZ] human metagenome; G_DNA_Stool
230
305
+
Lys
CTT
[ENA]
¢þ
>WENV181426230
OGCQ01003718
[OGCQ] human gut metagenome; human gut
8785
8710
-
Lys
CTT
[ENA]
¢þ
>WENV181600304
OGLD01022194
[OGLD] metagenome; Human gut stool
53
128
+
Lys
CTT
[ENA]
¢þ
>WENV181805217
OGSH01003201
[OGSH] human gut metagenome; fecal sample 5 from infant 6
1005
1080
+
Lys
CTT
[ENA]
¢þ
>WENV181807679
OGSQ01000025
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
21200
21125
-
Lys
CTT
[ENA]
¢þ
>WENV181807853
OGSQ01000421
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
16482
16407
-
Lys
CTT
[ENA]
¢þ
>WENV181807936
OGSQ01001480
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
327
402
+
Lys
CTT
[ENA]
¢þ
>WENV181808000
OGSQ01003591
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
1382
1307
-
Lys
CTT
[ENA]
¢þ
>WENV181809607
OGST01000660
[OGST] human gut metagenome; fecal sample 7 from infant 6
12126
12051
-
Lys
CTT
[ENA]
¢þ
>WENV181809717
OGST01003744
[OGST] human gut metagenome; fecal sample 7 from infant 6
58
133
+
Lys
CTT
[ENA]
¢þ
>WENV181814843
OGTH01000444
[OGTH] human gut metagenome; fecal sample 4 from infant 6
5
80
+
Lys
CTT
[ENA]
¢þ
>WENV181817578
OGTN01000939
[OGTN] human gut metagenome; fecal sample 5 from infant 4
5520
5445
-
Lys
CTT
[ENA]
¢þ
>WENV181817672
OGTN01002941
[OGTN] human gut metagenome; fecal sample 5 from infant 4
62
137
+
Lys
CTT
[ENA]
¢þ
>WENV181818939
OGTU01000409
[OGTU] human gut metagenome; fecal sample 6 from infant 4
5419
5344
-
Lys
CTT
[ENA]
¢þ
>WENV181818994
OGTU01002183
[OGTU] human gut metagenome; fecal sample 6 from infant 4
59
134
+
Lys
CTT
[ENA]
¢þ
>WENV181818997
OGTU01002873
[OGTU] human gut metagenome; fecal sample 6 from infant 4
112
187
+
Lys
CTT
[ENA]
¢þ
>WENV181819015
OGTU01005227
[OGTU] human gut metagenome; fecal sample 6 from infant 4
729
654
-
Lys
CTT
[ENA]
¢þ
>WENV181834682
OGUR01233022
[OGUR] metagenome; Human gut stool
32
107
+
Lys
CTT
[ENA]
¢þ
>WENV182402222
OIES01001940
[OIES] human gut metagenome; human gut
610
535
-
Lys
CTT
[ENA]
¢þ
>WENV182405881
OIEX01000003
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
130984
131059
+
Lys
CTT
[ENA]
¢þ
>WENV182406189
OIEX01001260
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
82
157
+
Lys
CTT
[ENA]
¢þ
>WENV182613655
OJKA01004569
[OJKA] metagenome; faeces
195
120
-
Lys
CTT
[ENA]
¢þ
>WENV182613784
OJKA01013062
[OJKA] metagenome; faeces
1207
1132
-
Lys
CTT
[ENA]
¢þ
>WENV182613812
OJKA01015951
[OJKA] metagenome; faeces
46
121
+
Lys
CTT
[ENA]
¢þ
>WENV182807195
OJVV01001610
[OJVV] human gut metagenome; human gut
1605
1530
-
Lys
CTT
[ENA]
¢þ
>WENV182807513
OJVX01001746
[OJVX] human gut metagenome; human gut
1541
1616
+
Lys
CTT
[ENA]
¢þ
>WENV182813191
OJXZ01004306
[OJXZ] human gut metagenome; human gut
731
656
-
Lys
CTT
[ENA]
¢þ
>WENV182816571
OJZB01000352
[OJZB] human gut metagenome; human gut
61
136
+
Lys
CTT
[ENA]
¢þ
>WENV182830325
OKDX01007865
[OKDX] human gut metagenome; human gut
686
611
-
Lys
CTT
[ENA]
¢þ
>WENV182838346
OKGR01004418
[OKGR] human gut metagenome; human gut
133
58
-
Lys
CTT
[ENA]
¢þ
>WENV182844323
OKIR01001617
[OKIR] human gut metagenome; human gut
724
799
+
Lys
CTT
[ENA]
¢þ
>WENV182849875
OKKU01001156
[OKKU] human gut metagenome; human gut
864
939
+
Lys
CTT
[ENA]
¢þ
>WENV182850920
OKLH01002518
[OKLH] human gut metagenome; human gut
674
749
+
Lys
CTT
[ENA]
¢þ
>WENV182855259
OKMY01000899
[OKMY] human gut metagenome; human gut
2604
2679
+
Lys
CTT
[ENA]
¢þ
>WENV182963295
OKWQ01000060
[OKWQ] human gut metagenome; stool
48894
48819
-
Lys
CTT
[ENA]
¢þ
>C08002621
CP001056
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [CP001056]
432485
432560
+
Lys
CTT
[Ensembl]
¡û
>C08002545
CP001078
Bacillota
Clostridium botulinum E3 str. Alaska E43 [CP001078]
426718
426793
+
Lys
CTT
[Ensembl]
¡û
>W09118944
ACDK01000006
Bacillota
Clostridium sp. 7_2_43FAA [ACDK]
20166
20241
+
Lys
CTT
[ENA]
¡û
>W09118985
ACDK01000111
Bacillota
Clostridium sp. 7_2_43FAA [ACDK]
3910
3835
-
Lys
CTT
[ENA]
¡û
>W09134239
ACSC01000002
Bacillota
Clostridium botulinum E1 str. 'BoNT E Beluga' [ACSC]
3424663
3424588
-
Lys
CTT
[ENA]
¡û
>W141822333
JQOJ01000130
Bacillota
Clostridium botulinum [JQOJ]
203
278
+
Lys
CTT
[ENA]
¡û
>W141822395
JQOK01000099
Bacillota
Clostridium botulinum [JQOK]
214114
214189
+
Lys
CTT
[ENA]
¡û
>W141822402
JQOK01000099
Bacillota
Clostridium botulinum [JQOK]
214724
214799
+
Lys
CTT
[ENA]
¡û
>W1911159922
NPMX01000007
Bacillota
Clostridium botulinum 202F [NPMX]
171271
171346
+
Lys
CTT
[ENA]
¡û
>W1911159991
NPMY01000008
Bacillota
Clostridium botulinum Hazen [NPMY]
2820
2745
-
Lys
CTT
[ENA]
¡û
>W1911491403
OAOE01000003
Bacillota
Clostridium tertium [OAOE]
187465
187390
-
Lys
CTT
[ENA]
¡û
>W1911491429
OAOE01000027
Bacillota
Clostridium tertium [OAOE]
50600
50675
+
Lys
CTT
[ENA]
¡û
>W1911491454
OAOE01000056
Bacillota
Clostridium tertium [OAOE]
125
200
+
Lys
CTT
[ENA]
¡û
>W1911493912
OBJV01000001
Bacillota
Clostridium tertium [OBJV]
129413
129488
+
Lys
CTT
[ENA]
¡û
>W1911493964
OBJV01000016
Bacillota
Clostridium tertium [OBJV]
4990
4915
-
Lys
CTT
[ENA]
¡û
>W1911493987
OBJV01000034
Bacillota
Clostridium tertium [OBJV]
4413
4338
-
Lys
CTT
[ENA]
¡û
>W1911533824
OKRA01000002
Bacillota
Clostridium cagae Marseille-P4344 [OKRA]
216108
216183
+
Lys
CTT
[ENA]
¡û
>W1810470660
QAEJ01000101
Bacillota
Bacillus anthracis A155 [QAEJ]
398
473
+
Lys
CTT
[ENA]
¡û
>W1810604944
QGMU01000017
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
10300
10225
-
Lys
CTT
[ENA]
¡û
>W1810604968
QGMU01000029
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
24965
25040
+
Lys
CTT
[ENA]
¡û
>W1810604973
QGMU01000037
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
356
431
+
Lys
CTT
[ENA]
¡û
>W1810605037
QGMV01000018
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
591
516
-
Lys
CTT
[ENA]
¡û
>W1810605048
QGMV01000021
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
36148
36223
+
Lys
CTT
[ENA]
¡û
>W1810605057
QGMV01000036
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
4043
3968
-
Lys
CTT
[ENA]
¡û
>C151014146
CP006903
Bacillota
Clostridium botulinum 202F [CP006903]
3000972
3001047
+
Lys
CTT
[Ensembl]
¡û
>C151070137
CP010520
Bacillota
Clostridium botulinum NCTC 8266 [CP010520]
417910
417985
+
Lys
CTT
[Ensembl]
¡û
>C151070216
CP010521
Bacillota
Clostridium botulinum NCTC 8550 [CP010521]
417910
417985
+
Lys
CTT
[Ensembl]
¡û
>W1511506737
JXMR01000001
Bacillota
Clostridium botulinum NCTC 11219 [JXMR]
1527065
1527140
+
Lys
CTT
[ENA]
¡û
>W1511595446
LBMX01000012
Bacillota
Clostridium sp. C8 [LBMX]
43995
44070
+
Lys
CTT
[ENA]
¡û
>W1511595479
LBMX01000104
Bacillota
Clostridium sp. C8 [LBMX]
3938
3863
-
Lys
CTT
[ENA]
¡û
>W1511699150
LGII01000026
Bacillota
Clostridium botulinum ATCC 23387 [LGII]
18136
18061
-
Lys
CTT
[ENA]
¡û
>W1511699244
LGIJ01000055
Bacillota
Clostridium botulinum ATCC 9564 [LGIJ]
2691
2616
-
Lys
CTT
[ENA]
¡û
>C161104287
FR745875
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [FR745875]
432793
432868
+
Lys
CTT
-
¡û
>W1610501178
FLKB01000005
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
8396
8321
-
Lys
CTT
[ENA]
¡û
>W1610501266
FLKB01000009
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
186986
187061
+
Lys
CTT
[ENA]
¡û
>W1610501330
FLKB01000019
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
435
360
-
Lys
CTT
[ENA]
¡û
>W1610604278
LFQW01000037
Bacillota
Clostridium botulinum [LFQW]
28502
28577
+
Lys
CTT
[ENA]
¡û
>W1610604371
LFQX01000106
Bacillota
Clostridium botulinum [LFQX]
325
250
-
Lys
CTT
[ENA]
¡û
>WENV086454
BABF01004820
Gut microbiome of Human (healthy human sample In-M, Infant, Female)
2
79
+
Lys
CTT
[ENA]
>W1710494648
FLKB01000005
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
8396
8321
-
Lys
CTT
[ENA]
¡û
>W1710494736
FLKB01000009
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
186986
187061
+
Lys
CTT
[ENA]
¡û
>W1710494800
FLKB01000019
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
435
360
-
Lys
CTT
[ENA]
¡û
>W1710725794
LFQW01000037
Bacillota
Clostridium botulinum [LFQW]
28502
28577
+
Lys
CTT
[ENA]
¡û
>W1710725887
LFQX01000106
Bacillota
Clostridium botulinum [LFQX]
325
250
-
Lys
CTT
[ENA]
¡û
>W1710754718
LHUM01000018
Bacillota
Clostridium botulinum [LHUM]
2691
2616
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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