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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281305 (63 seq.)
>W1711791621
MWJB01000001
Bacillota
Clostridium botulinum [MWJB]
9878
9803
-
Met
CAT
[ENA]
¡û
>W1711791742
MWJC01000036
Bacillota
Clostridium botulinum [MWJC]
9706
9631
-
Met
CAT
[ENA]
¡û
>W1711791791
MWJD01000001
Bacillota
Clostridium botulinum [MWJD]
663213
663138
-
Met
CAT
[ENA]
¡û
>W1711791941
MWJG01000001
Bacillota
Clostridium botulinum [MWJG]
30763
30688
-
Met
CAT
[ENA]
¡û
>W131098401
AORM01000047
Bacillota
Clostridium botulinum CB11/1-1 [AORM]
5920
5845
-
Met
CAT
[ENA]
¡û
>W131203906
ASZX01000041
Bacillota
Clostridium autoethanogenum DSM 10061 [ASZX]
23045
23120
+
Met
CAT
[ENA]
¡û
>C171059558
CP017253
Bacillota
Clostridium taeniosporum 1/k [CP017253]
1053842
1053767
-
Met
CAT
-
¡û
>WENV180198018
OBAB01062439
[OBAB] human gut metagenome; faeces
121
196
+
fMet
CAT
[ENA]
¢þ
>W141039755
ALYJ01000037
Bacillota
Clostridium botulinum CDC66177 [ALYJ]
74578
74503
-
Met
CAT
[ENA]
¡û
>WENV180456648
OBXR01000291
[OBXR] human gut metagenome; faeces
564
489
-
fMet
CAT
[ENA]
¢þ
>WENV180605606
OCPT01000432
[OCPT] human gut metagenome; human gut
23674
23749
+
fMet
CAT
[ENA]
¢þ
>WENV181789218
OGRO01010295
[OGRO] human gut metagenome; faeces
2285
2210
-
fMet
CAT
[ENA]
¢þ
>WENV181875709
OGXC01000106
[OGXC] human gut metagenome; faeces
25288
25363
+
fMet
CAT
[ENA]
¢þ
>W141259091
CBYM010000003
Bacillota
Clostridium saudiense JCC [CBYM]
5131
5206
+
Met
CAT
[ENA]
¡û
>C08002666
CP001056
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [CP001056]
1107281
1107209
-
Met
CAT
[Ensembl]
¡û
>WENV183079890
OLIX01104825
[OLIX] human gut metagenome; feces
105
180
+
fMet
CAT
[ENA]
¢þ
>WENV183103506
OLNJ01000807
[OLNJ] human gut metagenome; faeces
19721
19796
+
fMet
CAT
[ENA]
¢þ
>C08002589
CP001078
Bacillota
Clostridium botulinum E3 str. Alaska E43 [CP001078]
1068299
1068227
-
Met
CAT
[Ensembl]
¡û
>WENV183196557
OLPU01001570
[OLPU] human gut metagenome; faeces
8492
8417
-
fMet
CAT
[ENA]
¢þ
>WENV183210965
OLQC01010991
[OLQC] human gut metagenome; faeces
3062
3137
+
fMet
CAT
[ENA]
¢þ
>WENV183237895
OLQY01002024
[OLQY] human gut metagenome; faeces
10419
10344
-
fMet
CAT
[ENA]
¢þ
>WENV183241971
OLRB01001834
[OLRB] human gut metagenome; faeces
822
747
-
fMet
CAT
[ENA]
¢þ
>WENV183506411
OMGY01000815
[OMGY] human gut metagenome; human gut
22707
22782
+
fMet
CAT
[ENA]
¢þ
>W141822259
JQOJ01000022
Bacillota
Clostridium botulinum [JQOJ]
223949
223874
-
Met
CAT
[ENA]
¡û
>W141822377
JQOK01000056
Bacillota
Clostridium botulinum [JQOK]
640512
640437
-
Met
CAT
[ENA]
¡û
>W09134204
ACSC01000002
Bacillota
Clostridium botulinum E1 str. 'BoNT E Beluga' [ACSC]
2777118
2777193
+
Met
CAT
[ENA]
¡û
>W1911159897
NPMX01000001
Bacillota
Clostridium botulinum 202F [NPMX]
253489
253414
-
Met
CAT
[ENA]
¡û
>W1911160006
NPMY01000019
Bacillota
Clostridium botulinum Hazen [NPMY]
21419
21494
+
Met
CAT
[ENA]
¡û
>W1911533808
OKRA01000001
Bacillota
Clostridium cagae Marseille-P4344 [OKRA]
630084
630009
-
Met
CAT
[ENA]
¡û
>C151014162
CP006903
Bacillota
Clostridium botulinum 202F [CP006903]
3650924
3650849
-
Met
CAT
[Ensembl]
¡û
>C151070181
CP010520
Bacillota
Clostridium botulinum NCTC 8266 [CP010520]
1059489
1059414
-
Met
CAT
[Ensembl]
¡û
>C151070260
CP010521
Bacillota
Clostridium botulinum NCTC 8550 [CP010521]
1059492
1059417
-
Met
CAT
[Ensembl]
¡û
>W1510060474
CCXI01000125
Bacillota
Clostridium polynesiense MS1 [CCXI]
14804
14879
+
Met
CAT
[ENA]
¡û
>W1511506756
JXMR01000001
Bacillota
Clostridium botulinum NCTC 11219 [JXMR]
2189704
2189629
-
Met
CAT
[ENA]
¡û
>W1511699121
LGII01000021
Bacillota
Clostridium botulinum ATCC 23387 [LGII]
1004364
1004439
+
Met
CAT
[ENA]
¡û
>W1511699209
LGIJ01000034
Bacillota
Clostridium botulinum ATCC 9564 [LGIJ]
322681
322756
+
Met
CAT
[ENA]
¡û
>C161021519
CP009557
Bacillota
Clostridium perfringens FORC_003 [CP009557]
649087
649162
+
Met
CAT
-
¡û
>C161104332
FR745875
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [FR745875]
1107586
1107511
-
Met
CAT
-
¡û
>W1610099884
CYYT01000005
Bacillota
Clostridium disporicum [CYYT]
25714
25639
-
Met
CAT
[ENA]
¡û
>W1610101635
CYZV01000022
Bacillota
Clostridium disporicum [CYZV]
10479
10404
-
Met
CAT
[ENA]
¡û
>W1610601372
LFOM01000039
Bacillota
Clostridium botulinum [LFOM]
136660
136585
-
Met
CAT
[ENA]
¡û
>W1610602107
LFPA01000087
Bacillota
Clostridium botulinum [LFPA]
12884
12959
+
Met
CAT
[ENA]
¡û
>W1610602170
LFPB01000024
Bacillota
Clostridium botulinum [LFPB]
25574
25499
-
Met
CAT
[ENA]
¡û
>W1610602231
LFPC01000051
Bacillota
Clostridium botulinum [LFPC]
72312
72387
+
Met
CAT
[ENA]
¡û
>W1610602242
LFPD01000005
Bacillota
Clostridium botulinum [LFPD]
30619
30544
-
Met
CAT
[ENA]
¡û
>W1610602318
LFPE01000006
Bacillota
Clostridium botulinum [LFPE]
198331
198406
+
Met
CAT
[ENA]
¡û
>W1610602406
LFPG01000003
Bacillota
Clostridium botulinum [LFPG]
255486
255561
+
Met
CAT
[ENA]
¡û
>W1610604297
LFQW01000043
Bacillota
Clostridium botulinum [LFQW]
18421
18346
-
Met
CAT
[ENA]
¡û
>W1610604331
LFQX01000005
Bacillota
Clostridium botulinum [LFQX]
160506
160431
-
Met
CAT
[ENA]
¡û
>W1610635719
LITQ01000054
Bacillota
Clostridium coskatii [LITQ]
1267
1192
-
Met
CAT
[ENA]
¡û
>W1710102639
CYYT01000005
Bacillota
Clostridium disporicum [CYYT]
25714
25639
-
Met
CAT
[ENA]
¡û
>W1710104390
CYZV01000022
Bacillota
Clostridium disporicum [CYZV]
10479
10404
-
Met
CAT
[ENA]
¡û
>W1710722888
LFOM01000039
Bacillota
Clostridium botulinum [LFOM]
136660
136585
-
Met
CAT
[ENA]
¡û
>W1710723623
LFPA01000087
Bacillota
Clostridium botulinum [LFPA]
12884
12959
+
Met
CAT
[ENA]
¡û
>W1710723686
LFPB01000024
Bacillota
Clostridium botulinum [LFPB]
25574
25499
-
Met
CAT
[ENA]
¡û
>W1710723747
LFPC01000051
Bacillota
Clostridium botulinum [LFPC]
72312
72387
+
Met
CAT
[ENA]
¡û
>W1710723758
LFPD01000005
Bacillota
Clostridium botulinum [LFPD]
30619
30544
-
Met
CAT
[ENA]
¡û
>W1710723834
LFPE01000006
Bacillota
Clostridium botulinum [LFPE]
198331
198406
+
Met
CAT
[ENA]
¡û
>W1710723922
LFPG01000003
Bacillota
Clostridium botulinum [LFPG]
255486
255561
+
Met
CAT
[ENA]
¡û
>W1710725813
LFQW01000043
Bacillota
Clostridium botulinum [LFQW]
18421
18346
-
Met
CAT
[ENA]
¡û
>W1710725847
LFQX01000005
Bacillota
Clostridium botulinum [LFQX]
160506
160431
-
Met
CAT
[ENA]
¡û
>W1710754728
LHUM01000023
Bacillota
Clostridium botulinum [LHUM]
322678
322753
+
Met
CAT
[ENA]
¡û
>W1710770427
LITQ01000054
Bacillota
Clostridium coskatii [LITQ]
1267
1192
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK