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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281316 (58 seq.)
>W1710924953
LODB01000398
Gammaproteobacteria
Escherichia coli [LODB]
682
607
-
Phe
GAA
[ENA]
¡û
>W1711166431
LVVC01000031
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii [LVVC]
15974
16049
+
Phe
GAA
[ENA]
¡û
>W1711177738
LWGF01000373
Gammaproteobacteria
Oleiphilus sp. HI0125 [LWGF]
6892
6817
-
Phe
GAA
[ENA]
¡û
>W1711302097
MAIV01000003
Gammaproteobacteria
Escherichia coli [MAIV]
315364
315439
+
Phe
GAA
[ENA]
¡û
>W1711341705
MCGF01000002
Gammaproteobacteria
Enterobacter ludwigii [MCGF]
378429
378504
+
Phe
GAA
[ENA]
¡û
>W1711467069
MJNC01000001
Gammaproteobacteria
Buchnera aphidicola (Myzus persicae) [MJNC]
35076
35004
-
Phe
GAA
[ENA]
¡û
>W1711602560
MOLF01000029
Gammaproteobacteria
Escherichia coli [MOLF]
11220
11145
-
Phe
GAA
[ENA]
¡û
>W1711615294
MOZJ01000021
Gammaproteobacteria
Escherichia coli [MOZJ]
35304
35229
-
Phe
GAA
[ENA]
¡û
>W1711742075
MUEX01000005
Gammaproteobacteria
Salinivibrio sp. IB870 [MUEX]
173979
173904
-
Phe
GAA
[ENA]
¡û
>W1711742120
MUEX01000029
Gammaproteobacteria
Salinivibrio sp. IB870 [MUEX]
19800
19875
+
Phe
GAA
[ENA]
¡û
>W1711812712
MXHX01000017
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Albert [MXHX]
81305
81380
+
Phe
GAA
[ENA]
¡û
>C171022199
CP013259
Gammaproteobacteria
Buchnera aphidicola [Diuraphis noxia] [CP013259]
18146
18074
-
Phe
GAA
-
¡û
>C171130398
LT635893
Gammaproteobacteria
Buchnera aphidicola Bcipseudotaxifoliae [LT635893]
11157
11083
-
Phe
GAA
-
¡û
>C171130429
LT667500
Gammaproteobacteria
Buchnera aphidicola BCifornacula [LT667500]
11137
11063
-
Phe
GAA
-
¡û
>C001866
CP000263
Gammaproteobacteria
Buchnera aphidicola BCc [CP000263]
10538
10466
-
Phe
GAA
[Ensembl]
¡û
>C001898
AE013218
Gammaproteobacteria
Buchnera aphidicola str. Sg [Schizaphis graminum] [AE013218]
18028
17956
-
Phe
GAA
[Ensembl]
¡û
>C004654
BA000003
Gammaproteobacteria
Buchnera aphidicola str. APS [Acyrthosiphon pisum] [BA000003]
18101
18029
-
Phe
GAA
[Ensembl]
¡û
>WENV180489743
OBZS01012412
[OBZS] human gut metagenome; faeces
1
76
+
Phe
GAA
[ENA]
¢þ
>WENV170452609
CEUZ01271985
[CEUZ] marine metagenome genome assembly TARA_125_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2058
2130
+
Phe
GAA
[ENA]
¢þ
>C181175414
CP029161
Gammaproteobacteria
Buchnera aphidicola [Melanaphis sacchari] LSU [CP029161]
607924
607998
+
Phe
GAA
-
¡û
>C181176052
CP029205
Gammaproteobacteria
Buchnera aphidicola [Schizaphis graminum] [CP029205]
594597
594671
+
Phe
GAA
-
¡û
>C191094384
CP032759
Gammaproteobacteria
Buchnera aphidicola [Rhopalosiphum maidis] BTI [CP032759]
118660
118734
+
Phe
GAA
-
¡û
>C191098062
CP032996
Gammaproteobacteria
Buchnera aphidicola [Therioaphis trifolii] Tma [CP032996]
16318
16244
-
Phe
GAA
-
¡û
>C191098094
CP033006
Gammaproteobacteria
Buchnera aphidicola [Macrosiphum euphorbiae] Meu [CP033006]
18166
18094
-
Phe
GAA
-
¡û
>C191132497
CP034861
Gammaproteobacteria
Buchnera aphidicola [Muscaphis stroyani] Mst [CP034861]
18156
18083
-
Phe
GAA
-
¡û
>C191132529
CP034867
Gammaproteobacteria
Buchnera aphidicola [Macrosiphum gaurae] Mga [CP034867]
18173
18101
-
Phe
GAA
-
¡û
>C191132561
CP034873
Gammaproteobacteria
Buchnera aphidicola [Hyadaphis tataricae] Hta [CP034873]
18106
18034
-
Phe
GAA
-
¡û
>C191132593
CP034894
Gammaproteobacteria
Buchnera aphidicola [Aphis helianthi] Ahe [CP034894]
18122
18048
-
Phe
GAA
-
¡û
>C191132625
CP034897
Gammaproteobacteria
Buchnera aphidicola [Aphis craccivora] Acr [CP034897]
18129
18055
-
Phe
GAA
-
¡û
>W09121563
ACFK01000001
Gammaproteobacteria
Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum) [ACFK]
18105
18033
-
Phe
GAA
[ENA]
¡û
>C09101348
CP001161
Gammaproteobacteria
Buchnera aphidicola str. 5A [Acyrthosiphon pisum] [CP001161]
18100
18028
-
Phe
GAA
[Ensembl]
¡û
>C09101380
CP001158
Gammaproteobacteria
Buchnera aphidicola str. Tuc7 [Acyrthosiphon pisum] [CP001158]
18100
18028
-
Phe
GAA
[Ensembl]
¡û
>C151000985
AP012551
Gammaproteobacteria
Plautia stali symbiont [AP012551]
1595053
1595128
+
Phe
GAA
[Ensembl]
¡û
>C151000994
AP012551
Gammaproteobacteria
Plautia stali symbiont [AP012551]
4000311
4000386
+
Phe
GAA
[Ensembl]
¡û
>C151003538
CP002697
Gammaproteobacteria
Buchnera aphidicola str. USDA [Myzus persicae] [CP002697]
18078
18006
-
Phe
GAA
[Ensembl]
¡û
>C151003570
CP002699
Gammaproteobacteria
Buchnera aphidicola str. W106 [Myzus persicae] [CP002699]
18078
18006
-
Phe
GAA
[Ensembl]
¡û
>C151003602
CP002701
Gammaproteobacteria
Buchnera aphidicola str. G002 [Myzus persicae] [CP002701]
18078
18006
-
Phe
GAA
[Ensembl]
¡û
>C151003634
CP002703
Gammaproteobacteria
Buchnera aphidicola str. F009 [Myzus persicae] [CP002703]
18077
18005
-
Phe
GAA
[Ensembl]
¡û
>C151046600
CP009253
Gammaproteobacteria
Buchnera aphidicola [Aphis glycines] BAg [CP009253]
17862
17788
-
Phe
GAA
-
¡û
>C151086332
CP011787
Gammaproteobacteria
Candidatus Baumannia cicadellinicola B-GSS [CP011787]
572980
573053
+
Phe
GAA
-
¡û
>C11102049
CP002302
Gammaproteobacteria
Buchnera aphidicola str. JF99 [Acyrthosiphon pisum] [CP002302]
18104
18032
-
Phe
GAA
[Ensembl]
¡û
>C11102145
CP002648
Gammaproteobacteria
Buchnera aphidicola str. Ua [Uroleucon ambrosiae] [CP002648]
18150
18078
-
Phe
GAA
[Ensembl]
¡û
>C11102177
CP002645
Gammaproteobacteria
Buchnera aphidicola str. Ak [Acyrthosiphon kondoi] [CP002645]
18193
18121
-
Phe
GAA
[Ensembl]
¡û
>C11102208
CP001817
Gammaproteobacteria
Buchnera aphidicola [Cinara tujafilina] [CP001817]
11299
11227
-
Phe
GAA
[Ensembl]
¡û
>C161107333
LN890285
Gammaproteobacteria
Buchnera aphidicola BTs [LN890285]
11189
11115
-
Phe
GAA
-
¡û
>W1610200050
FCKI01000011
Gammaproteobacteria
Serratia marcescens [FCKI]
102531
102456
-
Phe
GAA
[ENA]
¡û
>W1610442036
FJYR01000002
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJYR]
510007
510082
+
Phe
GAA
[ENA]
¡û
>W1610443348
FJZJ01000013
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJZJ]
76711
76786
+
Phe
GAA
[ENA]
¡û
>W1610448764
FKCJ01000003
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKCJ]
12338
12263
-
Phe
GAA
[ENA]
¡û
>W1610782599
LODB01000398
Gammaproteobacteria
Escherichia coli [LODB]
682
607
-
Phe
GAA
[ENA]
¡û
>W1610976971
LVVC01000031
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii [LVVC]
15974
16049
+
Phe
GAA
[ENA]
¡û
>W1610986051
LWGF01000373
Gammaproteobacteria
Oleiphilus sp. HI0125 [LWGF]
6892
6817
-
Phe
GAA
[ENA]
¡û
>W1611052885
MAIV01000003
Gammaproteobacteria
Escherichia coli [MAIV]
315364
315439
+
Phe
GAA
[ENA]
¡û
>W1611067620
MCGF01000002
Gammaproteobacteria
Enterobacter ludwigii [MCGF]
378429
378504
+
Phe
GAA
[ENA]
¡û
>W1710201666
FCKI01000011
Gammaproteobacteria
Serratia marcescens [FCKI]
102531
102456
-
Phe
GAA
[ENA]
¡û
>W1710441664
FJYR01000002
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJYR]
510007
510082
+
Phe
GAA
[ENA]
¡û
>W1710442976
FJZJ01000013
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJZJ]
76711
76786
+
Phe
GAA
[ENA]
¡û
>W1710448392
FKCJ01000003
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKCJ]
12338
12263
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK