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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281319 (60 seq.)
>W1711124611
LUKH01000078
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
7938
7862
-
Met
CAT
[ENA]
¡û
>W1711124623
LUKH01000339
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
2763
2687
-
Met
CAT
[ENA]
¡û
>W1711258943
LYUZ01000001
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
411503
411579
+
Met
CAT
[ENA]
¡û
>W1711258948
LYUZ01000006
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
58
134
+
Met
CAT
[ENA]
¡û
>W1711258955
LYUZ01000020
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
173
249
+
Met
CAT
[ENA]
¡û
>W1711258968
LYUZ01000085
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
64045
63969
-
Met
CAT
[ENA]
¡û
>W1711258979
LYUZ01000108
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
58
134
+
Met
CAT
[ENA]
¡û
>C023202
CP000031
Alphaproteobacteria
Ruegeria pomeroyi DSS-3 [CP000031]
4010366
4010290
-
Met
CAT
[Ensembl]
¡û
>C023206
CP000031
Alphaproteobacteria
Ruegeria pomeroyi DSS-3 [CP000031]
3462029
3461953
-
Met
CAT
[Ensembl]
¡û
>W141151525
AXBD01000002
Alphaproteobacteria
Leisingera daeponensis DSM 23529 [AXBD]
3611627
3611703
+
Met
CAT
[ENA]
¡û
>W141151534
AXBD01000002
Alphaproteobacteria
Leisingera daeponensis DSM 23529 [AXBD]
2688727
2688651
-
Met
CAT
[ENA]
¡û
>W141151564
AXBE01000001
Alphaproteobacteria
Leisingera aquimarina DSM 24565 [AXBE]
1024286
1024362
+
Met
CAT
[ENA]
¡û
>W141151569
AXBE01000001
Alphaproteobacteria
Leisingera aquimarina DSM 24565 [AXBE]
1429744
1429820
+
Met
CAT
[ENA]
¡û
>W141151581
AXBE01000001
Alphaproteobacteria
Leisingera aquimarina DSM 24565 [AXBE]
264639
264563
-
Met
CAT
[ENA]
¡û
>W141151604
AXBE01000004
Alphaproteobacteria
Leisingera aquimarina DSM 24565 [AXBE]
1543945
1543869
-
Met
CAT
[ENA]
¡û
>W141151792
AXBI01000017
Alphaproteobacteria
Leisingera caerulea DSM 24564 [AXBI]
1983998
1984074
+
Met
CAT
[ENA]
¡û
>W141151826
AXBI01000017
Alphaproteobacteria
Leisingera caerulea DSM 24564 [AXBI]
1045701
1045625
-
Met
CAT
[ENA]
¡û
>WENV170290188
CERZ01011430
[CERZ] marine metagenome genome assembly TARA_082_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
633
557
-
Met
CAT
[ENA]
¢þ
>WENV170962452
MRWF01016068
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
35422
35346
-
Met
CAT
[ENA]
¢þ
>WENV170962822
MRWF01027889
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
555
479
-
Met
CAT
[ENA]
¢þ
>WENV170963728
MRWG01000603
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
13
89
+
Met
CAT
[ENA]
¢þ
>WENV170964922
MRWG01075229
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
315
239
-
Met
CAT
[ENA]
¢þ
>C191141104
CP035417
Alphaproteobacteria
Leisingera sp. NJS204 [CP035417]
75423
75499
+
Met
CAT
-
¡û
>C191141109
CP035417
Alphaproteobacteria
Leisingera sp. NJS204 [CP035417]
271178
271254
+
Met
CAT
-
¡û
>C191141112
CP035417
Alphaproteobacteria
Leisingera sp. NJS204 [CP035417]
490454
490530
+
Met
CAT
-
¡û
>C191141115
CP035417
Alphaproteobacteria
Leisingera sp. NJS204 [CP035417]
918738
918814
+
Met
CAT
-
¡û
>C191158454
CP038234
Alphaproteobacteria
Leisingera sp. NJS201 [CP038234]
206853
206929
+
Met
CAT
-
¡û
>C191158481
CP038234
Alphaproteobacteria
Leisingera sp. NJS201 [CP038234]
3828470
3828394
-
Met
CAT
-
¡û
>C191158486
CP038234
Alphaproteobacteria
Leisingera sp. NJS201 [CP038234]
3501881
3501805
-
Met
CAT
-
¡û
>C191158489
CP038234
Alphaproteobacteria
Leisingera sp. NJS201 [CP038234]
3193193
3193117
-
Met
CAT
-
¡û
>W09111727
ABXF01000047
Alphaproteobacteria
Rhodobacterales bacterium Y4I [ABXF]
29831
29755
-
Met
CAT
[ENA]
¡û
>C141008338
CP006773
Alphaproteobacteria
Leisingera methylohalidivorans DSM 14336 DSM 14336; MB2 [CP006773]
75590
75666
+
Met
CAT
[Ensembl]
¡û
>C141008343
CP006773
Alphaproteobacteria
Leisingera methylohalidivorans DSM 14336 DSM 14336; MB2 [CP006773]
714499
714575
+
Met
CAT
[Ensembl]
¡û
>C141008361
CP006773
Alphaproteobacteria
Leisingera methylohalidivorans DSM 14336 DSM 14336; MB2 [CP006773]
3349750
3349826
+
Met
CAT
[Ensembl]
¡û
>C141008374
CP006773
Alphaproteobacteria
Leisingera methylohalidivorans DSM 14336 DSM 14336; MB2 [CP006773]
3518675
3518599
-
Met
CAT
[Ensembl]
¡û
>C141008378
CP006773
Alphaproteobacteria
Leisingera methylohalidivorans DSM 14336 DSM 14336; MB2 [CP006773]
3198863
3198787
-
Met
CAT
[Ensembl]
¡û
>W1511482550
JWLC01000005
Alphaproteobacteria
Leisingera sp. ANG-M1 [JWLC]
53
129
+
Met
CAT
[ENA]
¡û
>W1511482579
JWLC01000017
Alphaproteobacteria
Leisingera sp. ANG-M1 [JWLC]
53
129
+
Met
CAT
[ENA]
¡û
>W1511482694
JWLE01000035
Alphaproteobacteria
Leisingera sp. ANG-DT [JWLE]
5565
5640
+
Met
CAT
[ENA]
¡û
>W1511482739
JWLF01000017
Alphaproteobacteria
Leisingera sp. ANG-S3 [JWLF]
77
1
-
Met
CAT
[ENA]
¡û
>W1511482795
JWLG01000024
Alphaproteobacteria
Leisingera sp. ANG-M6 [JWLG]
5787
5863
+
Met
CAT
[ENA]
¡û
>W1511482846
JWLH01000022
Alphaproteobacteria
Leisingera sp. ANG-S5 [JWLH]
5680
5756
+
Met
CAT
[ENA]
¡û
>W1511482896
JWLI01000033
Alphaproteobacteria
Leisingera sp. ANG-M7 [JWLI]
170
94
-
Met
CAT
[ENA]
¡û
>W1511483050
JWLM01000010
Alphaproteobacteria
Leisingera sp. ANG-S [JWLM]
77
1
-
Met
CAT
[ENA]
¡û
>W11157634
AFCF01000048
Alphaproteobacteria
Leisingera sp. ANG1 ANG1 [AFCF]
77
1
-
Met
CAT
[ENA]
¡û
>W1610093052
CYSR01000017
Alphaproteobacteria
Leisingera aquaemixtae [CYSR]
467
543
+
Met
CAT
[ENA]
¡û
>W1610093058
CYSR01000026
Alphaproteobacteria
Leisingera aquaemixtae [CYSR]
360
436
+
Met
CAT
[ENA]
¡û
>W1610093078
CYSR01000039
Alphaproteobacteria
Leisingera aquaemixtae [CYSR]
6102
6178
+
Met
CAT
[ENA]
¡û
>W1610935583
LUKH01000078
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
7938
7862
-
Met
CAT
[ENA]
¡û
>W1610935595
LUKH01000339
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
2763
2687
-
Met
CAT
[ENA]
¡û
>W1611021208
LYUZ01000001
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
411503
411579
+
Met
CAT
[ENA]
¡û
>W1611021213
LYUZ01000006
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
58
134
+
Met
CAT
[ENA]
¡û
>W1611021220
LYUZ01000020
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
173
249
+
Met
CAT
[ENA]
¡û
>W1611021233
LYUZ01000085
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
64045
63969
-
Met
CAT
[ENA]
¡û
>W1611021244
LYUZ01000108
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
58
134
+
Met
CAT
[ENA]
¡û
>W1710096260
CYSR01000017
Alphaproteobacteria
Leisingera aquaemixtae [CYSR]
467
543
+
Met
CAT
[ENA]
¡û
>W1710096266
CYSR01000026
Alphaproteobacteria
Leisingera aquaemixtae [CYSR]
360
436
+
Met
CAT
[ENA]
¡û
>W1710096286
CYSR01000039
Alphaproteobacteria
Leisingera aquaemixtae [CYSR]
6102
6178
+
Met
CAT
[ENA]
¡û
>W1710513027
FMZV01000032
Alphaproteobacteria
Ruegeria marina [FMZV]
19838
19762
-
Met
CAT
[ENA]
¡û
>W1710513030
FMZV01000043
Alphaproteobacteria
Ruegeria marina [FMZV]
77
1
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK