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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281350 (59 seq.)
>C171000451
CP007121
Thermotogota
Thermosipho sp. 1070 [CP007121]
711763
711688
-
Ala
TGC
-
¡û
>C171000763
CP007223
Thermotogota
Thermosipho sp. 1063 [CP007223]
703270
703195
-
Ala
TGC
-
¡û
>C171001398
CP007389
Thermotogota
Thermosipho melanesiensis 431 [CP007389]
640273
640198
-
Ala
TGC
-
¡û
>C025632
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
190650
190725
+
Ala
TGC
-
¡û
>C025713
CP000716
Thermotogota
Thermosipho melanesiensis BI429 [CP000716]
645318
645243
-
Ala
TGC
[Ensembl]
¡û
>C025715
CP000716
Thermotogota
Thermosipho melanesiensis BI429 [CP000716]
640274
640199
-
Ala
TGC
[Ensembl]
¡û
>C025801
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
753557
753482
-
Ala
TGC
[Ensembl]
¡û
>W141070764
ASGQ01000004
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
233763
233688
-
Ala
TGC
[ENA]
¡û
>W141082663
AUNF01000052
Thermotogota
Thermotoga sp. A7A [AUNF]
557
632
+
Ala
TGC
[ENA]
¡û
>WENV181408835
OGCH01016376
[OGCH] hot springs metagenome; hot springs
353
428
+
Ala
TGC
[ENA]
¢þ
>WENV181408840
OGCH01016461
[OGCH] hot springs metagenome; hot springs
356
431
+
Ala
TGC
[ENA]
¢þ
>C08011014
CP000812
Thermotogota
Pseudothermotoga lettingae TMO [CP000812]
2011136
2011064
-
Ala
TGC
[Ensembl]
¡û
>C08010912
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
788564
788492
-
Ala
TGC
[Ensembl]
¡û
>WENV170675714
LDZQ01000370
[LDZQ] terrestrial metagenome; oil reservoir sample I2
1003
928
-
Ala
TGC
[ENA]
¢þ
>WENV170676758
LDZS01002159
[LDZS] terrestrial metagenome; oil reservoir sample K3
10141
10066
-
Ala
TGC
[ENA]
¢þ
>WENV170974811
MTKY01075483
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1787
1859
+
Ala
TGC
[ENA]
¢þ
>W141561606
JHYP01000001
Thermotogota
Pseudothermotoga elfii DSM 9442 [JHYP]
318456
318531
+
Ala
TGC
[ENA]
¡û
>W141778855
JONI01000005
Thermotogota
Pseudothermotoga hypogea DSM 11164 [JONI]
424524
424449
-
Ala
TGC
[ENA]
¡û
>W09106558
AAWB01000011
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
39669
39744
+
Ala
TGC
[ENA]
¡û
>W09106594
AAWH01000014
Thermotogota
Thermosipho melanesiensis BI429 [AAWH]
11626
11701
+
Ala
TGC
[ENA]
¡û
>W09107412
ABIJ01000003
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
50616
50541
-
Ala
TGC
[ENA]
¡û
>W09112243
ABXR01000030
Thermotogota
Marinitoga piezophila KA3 [ABXR]
51719
51644
-
Ala
TGC
[ENA]
¡û
>C09110469
CP001185
Thermotogota
Thermosipho africanus TCF52B [CP001185]
1851856
1851931
+
Ala
TGC
[Ensembl]
¡û
>C09110664
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
505826
505751
-
Ala
TGC
[Ensembl]
¡û
>W1910129029
BHXD01000045
Thermotogota
Thermosipho globiformans JCM 15059 [BHXD]
469
394
-
Ala
TGC
[ENA]
¡û
>C141000350
AP014507
Thermotogota
Pseudothermotoga elfii DSM 9442 = NBRC 107921 [AP014507]
2045518
2045443
-
Ala
TGC
-
¡û
>C141000369
AP014508
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [AP014508]
1173682
1173757
+
Ala
TGC
-
¡û
>C141011543
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
754970
754895
-
Ala
TGC
-
¡û
>W1910635438
LNDD01000001
Thermotogota
Thermotoga sp. SG1 [LNDD]
269168
269093
-
Ala
TGC
[ENA]
¡û
>W1910635515
LNDE01000003
Thermotogota
Thermotoga sp. KOL6 [LNDE]
142465
142540
+
Ala
TGC
[ENA]
¡û
>C151001647
AP014509
Thermotogota
Thermotoga caldifontis AZM44c09 [AP014509]
1918025
1917950
-
Ala
TGC
-
¡û
>C151001695
AP014510
Thermotogota
Thermotoga profunda AZM34c06 [AP014510]
2164092
2164017
-
Ala
TGC
-
¡û
>C151004288
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
793331
793256
-
Ala
TGC
[Ensembl]
¡û
>C151004334
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
738683
738608
-
Ala
TGC
[Ensembl]
¡û
>C151030648
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
782951
782876
-
Ala
TGC
[Ensembl]
¡û
>C151074592
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
190652
190727
+
Ala
TGC
[Ensembl]
¡û
>C151076946
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
190652
190727
+
Ala
TGC
[Ensembl]
¡û
>C151076992
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
190652
190727
+
Ala
TGC
[Ensembl]
¡û
>W10105815
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
187110
187185
+
Ala
TGC
[ENA]
¡û
>C10113487
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
841287
841362
+
Ala
TGC
[Ensembl]
¡û
>W11108135
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
187110
187185
+
Ala
TGC
[ENA]
¡û
>C11123146
CP002351
Thermotogota
Pseudothermotoga thermarum DSM 5069 [CP002351]
1921910
1921985
+
Ala
TGC
[Ensembl]
¡û
>W11180813
AGIJ01000003
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
187469
187544
+
Ala
TGC
[ENA]
¡û
>C161005108
CP007141
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [CP007141]
619891
619816
-
Ala
TGC
[Ensembl]
¡û
>W121062182
AJII01000007
Thermotogota
Thermotoga sp. EMP [AJII]
221133
221058
-
Ala
TGC
[ENA]
¡û
>C131012482
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
190652
190727
+
Ala
TGC
-
¡û
>W1610540358
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
183011
182936
-
Ala
TGC
[ENA]
¡û
>W1610540371
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
109940
109865
-
Ala
TGC
[ENA]
¡û
>W1610540450
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
171284
171209
-
Ala
TGC
[ENA]
¡û
>W1610540462
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
72621
72696
+
Ala
TGC
[ENA]
¡û
>W1610612516
LGEV01000003
Thermotogota
Thermotoga sp. 50_64 [LGEV]
1003
928
-
Ala
TGC
[ENA]
¡û
>W1610613148
LGFM01000028
Thermotogota
Thermotoga sp. 47_83 [LGFM]
10141
10066
-
Ala
TGC
[ENA]
¡û
>W1710643379
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
183011
182936
-
Ala
TGC
[ENA]
¡û
>W1710643392
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
109940
109865
-
Ala
TGC
[ENA]
¡û
>W1710643471
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
171284
171209
-
Ala
TGC
[ENA]
¡û
>W1710643483
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
72621
72696
+
Ala
TGC
[ENA]
¡û
>W1710660946
JYCX01000003
Thermotogota
Thermosipho melanesiensis [JYCX]
283009
282934
-
Ala
TGC
[ENA]
¡û
>W1710733914
LGEV01000003
Thermotogota
Thermotoga sp. 50_64 [LGEV]
1003
928
-
Ala
TGC
[ENA]
¡û
>W1710734355
LGFM01000028
Thermotogota
Thermotoga sp. 47_83 [LGFM]
10141
10066
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK