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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281355 (116 seq.)
>W1710893552
LNEW01000090
Alphaproteobacteria
Rhodospirillales bacterium Ga0074136 [LNEW]
25939
25863
-
Pro
GGG
[ENA]
¡û
>W1711116563
LUCI01000032
Alphaproteobacteria
Novacetimonas hansenii [LUCI]
63077
63004
-
Pro
GGG
[ENA]
¡û
>W1711116607
LUCJ01000014
Alphaproteobacteria
Novacetimonas hansenii [LUCJ]
273845
273918
+
Pro
GGG
[ENA]
¡û
>W1711466202
MJMD01000086
Alphaproteobacteria
Novacetimonas hansenii [MJMD]
194868
194941
+
Pro
GGG
[ENA]
¡û
>W1711466246
MJME01000094
Alphaproteobacteria
Novacetimonas hansenii [MJME]
58469
58396
-
Pro
GGG
[ENA]
¡û
>W1711466266
MJMF01000023
Alphaproteobacteria
Novacetimonas hansenii [MJMF]
19680
19753
+
Pro
GGG
[ENA]
¡û
>C171032901
CP014674
Alphaproteobacteria
Kozakia baliensis DSM 14400 [CP014674]
1728650
1728577
-
Pro
GGG
-
¡û
>C171032925
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
973088
973161
+
Pro
GGG
-
¡û
>C171033123
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
915751
915678
-
Pro
GGG
-
¡û
>C171033159
CP014692
Alphaproteobacteria
Acetobacter aceti TMW2.1153 [CP014692]
3115739
3115666
-
Pro
GGG
-
¡û
>C171074544
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
1153489
1153562
+
Pro
GGG
-
¡û
>C171074596
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
1193876
1193949
+
Pro
GGG
-
¡û
>C171074648
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1160257
1160330
+
Pro
GGG
-
¡û
>C171074700
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1158545
1158618
+
Pro
GGG
-
¡û
>C171074752
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
1193877
1193950
+
Pro
GGG
-
¡û
>C171074804
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
1153549
1153622
+
Pro
GGG
-
¡û
>C171100656
CP019875
Alphaproteobacteria
Komagataeibacter nataicola RZS01 [CP019875]
871898
871825
-
Pro
GGG
-
¡û
>C171119435
CP021467
Alphaproteobacteria
Komagataeibacter europaeus SRCM101446 [CP021467]
1477170
1477097
-
Pro
GGG
-
¡û
>W131164873
ARBD01000005
Alphaproteobacteria
Acetobacter aceti ATCC 23746 [ARBD]
1974259
1974332
+
Pro
GGG
[ENA]
¡û
>W131176044
ARJS01000046
Alphaproteobacteria
Saccharibacter floricola DSM 15669 [ARJS]
252381
252305
-
Pro
GGG
[ENA]
¡û
>W131222521
AUBI01000006
Alphaproteobacteria
Acetobacter nitrogenifigens DSM 23921 [AUBI]
139129
139056
-
Pro
GGG
[ENA]
¡û
>C009826
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
1153543
1153616
+
Pro
GGG
[Ensembl]
¡û
>WENV180694488
OCZS012363696
[OCZS] soil metagenome; soil
94
21
-
Pro
GGG
[ENA]
¢þ
>W141082057
ATSX01000001
Alphaproteobacteria
Commensalibacter papalotli (ex Servin-Garciduenas et al. 2014) MX01 [ATSX]
602898
602971
+
Pro
GGG
[ENA]
¡û
>W141096527
AVFL01000013
Alphaproteobacteria
Skermanella stibiiresistens SB22 [AVFL]
188284
188211
-
Pro
GGG
[ENA]
¡û
>W08009507
ABPH01000007
Alphaproteobacteria
Gluconacetobacter diazotrophicus PAl 5 [ABPH]
89954
90027
+
Pro
GGG
[ENA]
¡û
>W141200335
AYXS01000001
Alphaproteobacteria
Asaia sp. SF2.1 [AYXS]
437977
437904
-
Pro
GGG
[ENA]
¡û
>W141224594
BAIO01000039
Alphaproteobacteria
Komagataeibacter kakiaceti JCM 25156 [BAIO]
3477
3404
-
Pro
GGG
[ENA]
¡û
>W141226077
BAJT01000009
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
120485
120558
+
Pro
GGG
[ENA]
¡û
>W141226144
BAJV01000002
Alphaproteobacteria
Asaia prunellae JCM 25354 [BAJV]
130076
130149
+
Pro
GGG
[ENA]
¡û
>W141227250
BAKW01000003
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
204713
204640
-
Pro
GGG
[ENA]
¡û
>W141229578
BAND01000038
Alphaproteobacteria
Acidomonas methanolica NBRC 104435 [BAND]
38814
38741
-
Pro
GGG
[ENA]
¡û
>W141247930
CBLX010000009
Alphaproteobacteria
Asaia bogorensis SF2.1 [CBLX]
128368
128441
+
Pro
GGG
[ENA]
¡û
>C08005261
AM889285
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5 [AM889285]
3171380
3171307
-
Pro
GGG
[Ensembl]
¡û
>W141402012
JDTI01000166
Alphaproteobacteria
Komagataeibacter rhaeticus AF1 [JDTI]
76482
76409
-
Pro
GGG
[ENA]
¡û
>WENV170710371
LNFM01001627
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
62778
62702
-
Pro
GGG
[ENA]
¢þ
>WENV170714943
LNFM01118014
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
971
1047
+
Pro
GGG
[ENA]
¢þ
>C181103413
CP024644
Alphaproteobacteria
Komagataeibacter xylinus CGMCC 2955 [CP024644]
768131
768204
+
Pro
GGG
-
¡û
>C191023959
CP023036
Alphaproteobacteria
Komagataeibacter saccharivorans CV1 [CP023036]
2107715
2107788
+
Pro
GGG
-
¡û
>C191090694
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
130321
130245
-
Pro
GGG
-
¡û
>C191150986
CP036404
Alphaproteobacteria
Komagataeibacter saccharivorans JH1 [CP036404]
1212677
1212604
-
Pro
GGG
-
¡û
>C191157845
CP038141
Alphaproteobacteria
Swingsia samuiensis AH83 [CP038141]
125421
125345
-
Pro
GGG
-
¡û
>C191166509
CP039460
Alphaproteobacteria
Acetobacteraceae bacterium 868 [CP039460]
2100718
2100794
+
Pro
GGG
-
¡û
>W141726093
JNAB01000023
Alphaproteobacteria
Kozakia baliensis [JNAB]
32670
32743
+
Pro
GGG
[ENA]
¡û
>W1910006526
BAGS01000009
Alphaproteobacteria
Acetobacter aceti NRIC 0242 [BAGS]
99461
99388
-
Pro
GGG
[ENA]
¡û
>W1910015203
BDLU01000032
Alphaproteobacteria
Komagataeibacter diospyri MSKU9 [BDLU]
163528
163455
-
Pro
GGG
[ENA]
¡û
>W1910015249
BDLW01000013
Alphaproteobacteria
Komagataeibacter diospyri MSKU15 [BDLW]
349791
349718
-
Pro
GGG
[ENA]
¡û
>W1910181801
BJMI01000026
Alphaproteobacteria
Gluconacetobacter liquefaciens NBRC 12388 [BJMI]
27877
27952
+
Pro
GGG
[ENA]
¡û
>W1910183211
BJNN01000029
Alphaproteobacteria
Novacetimonas hansenii NBRC 14820 [BJNN]
22058
21985
-
Pro
GGG
[ENA]
¡û
>W1910694722
MDTO01000068
Alphaproteobacteria
Komagataeibacter xylinus E26 [MDTO]
3450
3377
-
Pro
GGG
[ENA]
¡û
>W1910695590
MDVY01000099
Alphaproteobacteria
Novacetimonas hansenii ATCC 53582 [MDVY]
27132
27059
-
Pro
GGG
[ENA]
¡û
>W1910695656
MDVZ01000241
Alphaproteobacteria
Komagataeibacter xylinus BCRC 12334 [MDVZ]
10786
10713
-
Pro
GGG
[ENA]
¡û
>C09106301
CP001189
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5; ATCC 49037 [CP001189]
3601108
3601181
+
Pro
GGG
[Ensembl]
¡û
>W1910929226
NIRT01000001
Alphaproteobacteria
Komagataeibacter nataicola LMG 1536 [NIRT]
70507
70434
-
Pro
GGG
[ENA]
¡û
>W1910971997
NKCY01000001
Alphaproteobacteria
Komagataeibacter saccharivorans SRCM101450 [NKCY]
323557
323630
+
Pro
GGG
[ENA]
¡û
>W1910990415
NKTX01000002
Alphaproteobacteria
Komagataeibacter oboediens LMG 18849 [NKTX]
125727
125800
+
Pro
GGG
[ENA]
¡û
>W1910990460
NKTY01000001
Alphaproteobacteria
Komagataeibacter saccharivorans LMG 1582 [NKTY]
70422
70349
-
Pro
GGG
[ENA]
¡û
>W1910990523
NKTZ01000002
Alphaproteobacteria
Komagataeibacter rhaeticus LMG 22126 [NKTZ]
99262
99189
-
Pro
GGG
[ENA]
¡û
>W1910990577
NKUA01000007
Alphaproteobacteria
Komagataeibacter sucrofermentans LMG 18788 [NKUA]
95260
95187
-
Pro
GGG
[ENA]
¡û
>W1910990608
NKUB01000001
Alphaproteobacteria
Komagataeibacter swingsii LMG 22125 [NKUB]
290463
290536
+
Pro
GGG
[ENA]
¡û
>W1910990656
NKUC01000001
Alphaproteobacteria
Komagataeibacter xylinus LMG 1515 [NKUC]
264360
264433
+
Pro
GGG
[ENA]
¡û
>W1910990734
NKUD01000014
Alphaproteobacteria
Novacetimonas hansenii LMG 23726 [NKUD]
22211
22138
-
Pro
GGG
[ENA]
¡û
>W1910990754
NKUE01000002
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [NKUE]
247303
247230
-
Pro
GGG
[ENA]
¡û
>W1910990814
NKUF01000008
Alphaproteobacteria
Gluconacetobacter entanii LTH 4560 [NKUF]
70583
70510
-
Pro
GGG
[ENA]
¡û
>W1911138370
NOXG01000001
Alphaproteobacteria
Novacetimonas pomaceti T5K1 [NOXG]
287860
287933
+
Pro
GGG
[ENA]
¡û
>W1911597844
PNQZ01000064
Alphaproteobacteria
Asaia sp. W19 [PNQZ]
12979
12906
-
Pro
GGG
[ENA]
¡û
>W1911717674
QQBI01000003
Alphaproteobacteria
Komagataeibacter xylinus K2G30 [QQBI]
153089
153016
-
Pro
GGG
[ENA]
¡û
>W1810000563
BEWK01000026
Alphaproteobacteria
Acetobacter aceti NBRC 3281 [BEWK]
30498
30425
-
Pro
GGG
[ENA]
¡û
>W1810062060
PDNU01000043
Alphaproteobacteria
Pseudoroseomonas rhizosphaerae YW11 [PDNU]
25354
25281
-
Pro
GGG
[ENA]
¡û
>W1810062320
PDOA01000010
Alphaproteobacteria
Pseudoroseomonas aestuarii JR1/69-1-13 [PDOA]
32320
32393
+
Pro
GGG
[ENA]
¡û
>W1810223470
POTC01000004
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [POTC]
30989
31062
+
Pro
GGG
[ENA]
¡û
>W1810268390
PRCW01000062
Alphaproteobacteria
Novacetimonas pomaceti AV446 [PRCW]
75966
75893
-
Pro
GGG
[ENA]
¡û
>W1810583824
QEXL01000001
Alphaproteobacteria
Novacetimonas cocois WE7 [QEXL]
271401
271474
+
Pro
GGG
[ENA]
¡û
>W1810763165
QQAW01000016
Alphaproteobacteria
Gluconacetobacter liquefaciens DSM 5603 [QQAW]
24754
24679
-
Pro
GGG
[ENA]
¡û
>W1810894172
QUWV01000049
Alphaproteobacteria
Komagataeibacter melaceti AV 382 [QUWV]
3530
3457
-
Pro
GGG
[ENA]
¡û
>C151004016
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1186964
1187037
+
Pro
GGG
[Ensembl]
¡û
>C151004091
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
2286221
2286148
-
Pro
GGG
[Ensembl]
¡û
>C151004143
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2262326
2262253
-
Pro
GGG
[Ensembl]
¡û
>C151006055
CP004360
Alphaproteobacteria
Komagataeibacter xylinus E25 [CP004360]
2235796
2235723
-
Pro
GGG
[Ensembl]
¡û
>W10117688
ADTV01000047
Alphaproteobacteria
Novacetimonas hansenii ATCC 23769 [ADTV]
63010
62937
-
Pro
GGG
[ENA]
¡û
>C11110001
AP012159
Alphaproteobacteria
Komagataeibacter medellinensis NBRC 3288 [AP012159]
1057556
1057483
-
Pro
GGG
[Ensembl]
¡û
>W11122677
ADTV01000047
Alphaproteobacteria
Novacetimonas hansenii ATCC 23769 [ADTV]
63010
62937
-
Pro
GGG
[ENA]
¡û
>W1511431883
JUFX01000240
Alphaproteobacteria
Komagataeibacter intermedius AF2 [JUFX]
76488
76415
-
Pro
GGG
[ENA]
¡û
>W11157683
AFCH01000053
Alphaproteobacteria
Gluconacetobacter sp. SXCC-1 [AFCH]
102076
102149
+
Pro
GGG
[ENA]
¡û
>W11179003
AGFR01000003
Alphaproteobacteria
Commensalibacter intestini A911 [AGFR]
626196
626269
+
Pro
GGG
[ENA]
¡û
>W11184454
BABW01000089
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BABW]
2291
2218
-
Pro
GGG
[ENA]
¡û
>W11186770
CADP01000016
Alphaproteobacteria
Komagataeibacter europaeus LMG 18890 [CADP]
41688
41615
-
Pro
GGG
[ENA]
¡û
>W11186810
CADR01000001
Alphaproteobacteria
Komagataeibacter europaeus LMG 18494 [CADR]
62520
62447
-
Pro
GGG
[ENA]
¡û
>W11186885
CADS01000009
Alphaproteobacteria
Komagataeibacter europaeus 5P3 [CADS]
10164
10237
+
Pro
GGG
[ENA]
¡û
>W11186930
CADT01000001
Alphaproteobacteria
Komagataeibacter oboediens 174Bp2 [CADT]
113841
113914
+
Pro
GGG
[ENA]
¡û
>C161001080
AP014690
Alphaproteobacteria
Asaia bogorensis NBRC 16594 [AP014690]
1180777
1180850
+
Pro
GGG
[Ensembl]
¡û
>W1610026894
AVFK01000016
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
29279
29206
-
Pro
GGG
[ENA]
¡û
>W1610040671
BALE01000038
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
74329
74256
-
Pro
GGG
[ENA]
¡û
>W1610040711
BAMU01000018
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
126011
125938
-
Pro
GGG
[ENA]
¡û
>W1610041091
BANE01000105
Alphaproteobacteria
Novacetimonas hansenii JCM 7643 [BANE]
6083
6156
+
Pro
GGG
[ENA]
¡û
>W1610041148
BANF01000148
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
26309
26236
-
Pro
GGG
[ENA]
¡û
>W1610041257
BANI01000041
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
46445
46518
+
Pro
GGG
[ENA]
¡û
>W1610041294
BANJ01000012
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
125673
125746
+
Pro
GGG
[ENA]
¡û
>W1610070874
BCTP01000006
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
51548
51621
+
Pro
GGG
[ENA]
¡û
>W1610076862
BCZB01000020
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
23481
23557
+
Pro
GGG
[ENA]
¡û
>W1610187985
FBVP01000001
Alphaproteobacteria
Novacetimonas hansenii xylinus [FBVP]
1788260
1788187
-
Pro
GGG
[ENA]
¡û
>W1610753818
LNEW01000090
Alphaproteobacteria
Rhodospirillales bacterium Ga0074136 [LNEW]
25939
25863
-
Pro
GGG
[ENA]
¡û
>W1610927922
LUCI01000032
Alphaproteobacteria
Novacetimonas hansenii [LUCI]
63077
63004
-
Pro
GGG
[ENA]
¡û
>W1610927966
LUCJ01000014
Alphaproteobacteria
Novacetimonas hansenii [LUCJ]
273845
273918
+
Pro
GGG
[ENA]
¡û
>W1710023059
AVFK01000016
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
29279
29206
-
Pro
GGG
[ENA]
¡û
>W1710037869
BALE01000038
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
74329
74256
-
Pro
GGG
[ENA]
¡û
>W1710037909
BAMU01000018
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
126011
125938
-
Pro
GGG
[ENA]
¡û
>W1710038289
BANE01000105
Alphaproteobacteria
Novacetimonas hansenii JCM 7643 [BANE]
6083
6156
+
Pro
GGG
[ENA]
¡û
>W1710038346
BANF01000148
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
26309
26236
-
Pro
GGG
[ENA]
¡û
>W1710038455
BANI01000041
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
46445
46518
+
Pro
GGG
[ENA]
¡û
>W1710038492
BANJ01000012
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
125673
125746
+
Pro
GGG
[ENA]
¡û
>W1710068196
BCTP01000006
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
51548
51621
+
Pro
GGG
[ENA]
¡û
>W1710074551
BCZB01000020
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
23481
23557
+
Pro
GGG
[ENA]
¡û
>W1710189601
FBVP01000001
Alphaproteobacteria
Novacetimonas hansenii xylinus [FBVP]
1788260
1788187
-
Pro
GGG
[ENA]
¡û
>W1710624587
JOPB01000003
Alphaproteobacteria
Commensalibacter intestini [JOPB]
239774
239847
+
Pro
GGG
[ENA]
¡û
>W1710624946
JOPL01000013
Alphaproteobacteria
Acetobacter sp. DsW_063 [JOPL]
12872
12945
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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