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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281378 (16 seq.)
>C010022
CP000148
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [CP000148]
2107558
2107482
-
Met
CAT
[Ensembl]
¡û
>C010123
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
1977295
1977219
-
Met
CAT
[Ensembl]
¡û
>w018126
AASH01000116
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
1113
1035
-
Met
CAT
[ENA]
¡û
>WENV170446305
CEUY01114741
[CEUY] marine metagenome genome assembly TARA_123_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
178
254
+
Met
CAT
[ENA]
¢þ
>C191000632
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
1941047
1940971
-
Met
CAT
-
¡û
>W09100230
AAAS03000009
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [AAAS]
16908
16984
+
Met
CAT
[ENA]
¡û
>C09106368
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
3786562
3786486
-
Met
CAT
[Ensembl]
¡û
>C151059726
CP009788
Thermodesulfobacteriota
Geobacter pickeringii G13 [CP009788]
1562135
1562211
+
Met
CAT
[Ensembl]
¡û
>W1510006432
BAZF01000006
Thermodesulfobacteriota
Geobacter sp. OR-1 [BAZF]
95877
95801
-
Met
CAT
[ENA]
¡û
>C10107465
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
1944450
1944374
-
Met
CAT
[Ensembl]
¡û
>W1511500984
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
1284086
1284162
+
Met
CAT
[ENA]
¡û
>C161025446
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
3723927
3724003
+
Met
CAT
[Ensembl]
¡û
>C161080234
CP014963
Thermodesulfobacteriota
Geobacter anodireducens SD-1 [CP014963]
1735734
1735810
+
Met
CAT
-
¡û
>W121010712
AGJM01000003
Thermodesulfobacteriota
Geobacter metallireducens RCH3 [AGJM]
98265
98341
+
Met
CAT
[ENA]
¡û
>W1610046453
BBCJ01000035
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
15376
15452
+
Met
CAT
[ENA]
¡û
>W1710043249
BBCJ01000035
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
15376
15452
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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