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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281445 (146 seq.)
>W1711046901
LROR01000034
Bacillota
Clostridium coskatii [LROR]
114615
114690
+
His
GTG
[ENA]
¡û
>W131203878
ASZX01000018
Bacillota
Clostridium autoethanogenum DSM 10061 [ASZX]
24692
24617
-
His
GTG
[ENA]
¡û
>WENV180120029
OASE01063441
[OASE] human gut metagenome; ENVO:feces
156
82
-
His
GTG
[ENA]
¢þ
>WENV180233807
OBCQ01000822
[OBCQ] human gut metagenome; human gut
818
892
+
His
GTG
[ENA]
¢þ
>WENV180324877
OBKS01000382
[OBKS] human gut metagenome; human gut
9781
9708
-
His
GTG
[ENA]
¢þ
>WENV180329167
OBKV01000308
[OBKV] human gut metagenome; human gut
9754
9681
-
His
GTG
[ENA]
¢þ
>WENV180338621
OBLI01000692
[OBLI] pig gut metagenome; faeces
33481
33555
+
His
GTG
[ENA]
¢þ
>WENV180338634
OBLI01000715
[OBLI] pig gut metagenome; faeces
9688
9615
-
His
GTG
[ENA]
¢þ
>WENV180534566
OCHM01018371
[OCHM] human gut metagenome; human gut
1508
1582
+
His
GTG
[ENA]
¢þ
>WENV180536217
OCHN01004694
[OCHN] human gut metagenome; human gut
4437
4511
+
His
GTG
[ENA]
¢þ
>WENV180562406
OCLB01004104
[OCLB] human gut metagenome; human gut
998
1073
+
His
GTG
[ENA]
¢þ
>WENV180565695
OCLH01002361
[OCLH] human gut metagenome; human gut
1948
1873
-
His
GTG
[ENA]
¢þ
>WENV180567014
OCLL01002654
[OCLL] human gut metagenome; human gut
353
428
+
His
GTG
[ENA]
¢þ
>WENV180567928
OCLM01012548
[OCLM] human gut metagenome; human gut
1342
1268
-
His
GTG
[ENA]
¢þ
>WENV180606756
OCPT01146285
[OCPT] human gut metagenome; human gut
78
153
+
His
GTG
[ENA]
¢þ
>WENV180632518
OCQZ01001680
[OCQZ] human gut metagenome; human gut
1634
1707
+
His
GTG
[ENA]
¢þ
>WENV180644179
OCSG01000159
[OCSG] human gut metagenome; human gut
16194
16268
+
His
GTG
[ENA]
¢þ
>WENV180849259
ODKV01000194
[ODKV] human metagenome; G_DNA_Stool
41422
41495
+
His
GTG
[ENA]
¢þ
>WENV180850281
ODKV01004307
[ODKV] human metagenome; G_DNA_Stool
635
708
+
His
GTG
[ENA]
¢þ
>WENV180908597
ODQJ01010054
[ODQJ] human metagenome; G_DNA_Stool
794
719
-
His
GTG
[ENA]
¢þ
>WENV181350944
OFMP01000511
[OFMP] human gut metagenome; human gut
25193
25267
+
His
GTG
[ENA]
¢þ
>WENV181352132
OFMQ01000549
[OFMQ] human gut metagenome; human gut
24635
24561
-
His
GTG
[ENA]
¢þ
>WENV181355769
OFMT01008314
[OFMT] human gut metagenome; human gut
2625
2699
+
His
GTG
[ENA]
¢þ
>WENV181434084
OGDF01000276
[OGDF] human gut metagenome; human gut
4091
4164
+
His
GTG
[ENA]
¢þ
>WENV181434574
OGDF01001034
[OGDF] human gut metagenome; human gut
37991
37917
-
His
GTG
[ENA]
¢þ
>WENV181665071
OGOJ01000148
[OGOJ] human gut metagenome; faeces
64496
64422
-
His
GTG
[ENA]
¢þ
>WENV181671002
OGON01000026
[OGON] human gut metagenome; faeces
31408
31483
+
His
GTG
[ENA]
¢þ
>WENV181690766
OGOZ01000471
[OGOZ] human gut metagenome; faeces
23382
23307
-
His
GTG
[ENA]
¢þ
>WENV181774780
OGRF01000098
[OGRF] human gut metagenome; faeces
27526
27452
-
His
GTG
[ENA]
¢þ
>WENV181796829
OGRU01000320
[OGRU] human gut metagenome; faeces
45716
45643
-
His
GTG
[ENA]
¢þ
>WENV181999447
OHAW01001332
[OHAW] human gut metagenome; feces
2790
2715
-
His
GTG
[ENA]
¢þ
>WENV182006707
OHBG01000015
[OHBG] human gut metagenome; feces
39465
39538
+
His
GTG
[ENA]
¢þ
>WENV182018328
OHBX01000066
[OHBX] human gut metagenome; feces
48618
48543
-
His
GTG
[ENA]
¢þ
>WENV182028454
OHCP01000414
[OHCP] human gut metagenome; feces
16097
16023
-
His
GTG
[ENA]
¢þ
>WENV182038063
OHDE01000407
[OHDE] human gut metagenome; feces
71
145
+
His
GTG
[ENA]
¢þ
>WENV182046915
OHDW01001766
[OHDW] human gut metagenome; feces
139
65
-
His
GTG
[ENA]
¢þ
>WENV182052926
OHEI01001253
[OHEI] human gut metagenome; feces
5922
5997
+
His
GTG
[ENA]
¢þ
>WENV182059502
OHER01000011
[OHER] human gut metagenome; feces
78308
78383
+
His
GTG
[ENA]
¢þ
>WENV182060876
OHET01000148
[OHET] human gut metagenome; feces
15327
15402
+
His
GTG
[ENA]
¢þ
>WENV182061473
OHEU01000003
[OHEU] human gut metagenome; feces
59746
59673
-
His
GTG
[ENA]
¢þ
>WENV182062399
OHEV01000169
[OHEV] human gut metagenome; feces
22426
22351
-
His
GTG
[ENA]
¢þ
>WENV182064525
OHEZ01001480
[OHEZ] human gut metagenome; feces
560
633
+
His
GTG
[ENA]
¢þ
>WENV182066381
OHFC01000019
[OHFC] human gut metagenome; feces
78305
78380
+
His
GTG
[ENA]
¢þ
>WENV182075304
OHFR01000126
[OHFR] human gut metagenome; feces
26271
26345
+
His
GTG
[ENA]
¢þ
>WENV182076828
OHFW01000738
[OHFW] human gut metagenome; feces
2730
2655
-
His
GTG
[ENA]
¢þ
>WENV182079086
OHGG01000012
[OHGG] human gut metagenome; feces
122318
122393
+
His
GTG
[ENA]
¢þ
>WENV182085415
OHGS01000018
[OHGS] human gut metagenome; feces
53551
53478
-
His
GTG
[ENA]
¢þ
>WENV182091779
OHHE01022587
[OHHE] human gut metagenome; feces
598
672
+
His
GTG
[ENA]
¢þ
>WENV182103543
OHHZ01000089
[OHHZ] human gut metagenome; feces
4947
5021
+
His
GTG
[ENA]
¢þ
>WENV182107826
OHIL01000511
[OHIL] human gut metagenome; feces
12309
12234
-
His
GTG
[ENA]
¢þ
>WENV182115846
OHJB01000451
[OHJB] human gut metagenome; feces
17215
17290
+
His
GTG
[ENA]
¢þ
>WENV182116759
OHJC01004955
[OHJC] human gut metagenome; feces
2911
2986
+
His
GTG
[ENA]
¢þ
>WENV182119659
OHJI01006997
[OHJI] human gut metagenome; feces
328
403
+
His
GTG
[ENA]
¢þ
>WENV182120993
OHJK01002342
[OHJK] human gut metagenome; feces
5179
5254
+
His
GTG
[ENA]
¢þ
>WENV182121570
OHJN01000182
[OHJN] human gut metagenome; feces
22562
22487
-
His
GTG
[ENA]
¢þ
>WENV182125103
OHJS01000644
[OHJS] human gut metagenome; feces
229
155
-
His
GTG
[ENA]
¢þ
>WENV182128315
OHJY01001140
[OHJY] human gut metagenome; feces
6879
6805
-
His
GTG
[ENA]
¢þ
>WENV182133311
OHKG01000145
[OHKG] human gut metagenome; feces
21871
21796
-
His
GTG
[ENA]
¢þ
>WENV182134821
OHKI01001266
[OHKI] human gut metagenome; feces
2382
2456
+
His
GTG
[ENA]
¢þ
>WENV182139323
OHKP01000031
[OHKP] human gut metagenome; feces
34603
34676
+
His
GTG
[ENA]
¢þ
>WENV182140136
OHKQ01000014
[OHKQ] human gut metagenome; feces
42231
42304
+
His
GTG
[ENA]
¢þ
>WENV182143106
OHKV01000044
[OHKV] human gut metagenome; feces
102767
102693
-
His
GTG
[ENA]
¢þ
>WENV182147417
OHLB01012600
[OHLB] human gut metagenome; feces
199
125
-
His
GTG
[ENA]
¢þ
>WENV182149394
OHLH01000649
[OHLH] human gut metagenome; feces
229
155
-
His
GTG
[ENA]
¢þ
>WENV182150135
OHLI01000166
[OHLI] human gut metagenome; feces
23256
23331
+
His
GTG
[ENA]
¢þ
>WENV182151990
OHLK01009110
[OHLK] human gut metagenome; feces
204
131
-
His
GTG
[ENA]
¢þ
>WENV182153251
OHLN01000198
[OHLN] human gut metagenome; feces
20194
20119
-
His
GTG
[ENA]
¢þ
>WENV182162847
OHMI01000140
[OHMI] human gut metagenome; feces
21871
21796
-
His
GTG
[ENA]
¢þ
>WENV182171954
OHMY01000048
[OHMY] human gut metagenome; feces
16970
17044
+
His
GTG
[ENA]
¢þ
>WENV182177408
OHNK01000253
[OHNK] human gut metagenome; feces
18867
18940
+
His
GTG
[ENA]
¢þ
>WENV182178843
OHNM01005362
[OHNM] human gut metagenome; feces
226
152
-
His
GTG
[ENA]
¢þ
>WENV182189139
OHOO01000019
[OHOO] human gut metagenome; feces
78306
78381
+
His
GTG
[ENA]
¢þ
>WENV182190462
OHOQ01000018
[OHOQ] human gut metagenome; feces
35576
35649
+
His
GTG
[ENA]
¢þ
>WENV182196057
OHPF01000148
[OHPF] human gut metagenome; feces
15327
15402
+
His
GTG
[ENA]
¢þ
>WENV182197246
OHPH01000589
[OHPH] human gut metagenome; feces
18253
18327
+
His
GTG
[ENA]
¢þ
>WENV182206539
OHPV01001938
[OHPV] human gut metagenome; feces
5502
5429
-
His
GTG
[ENA]
¢þ
>WENV182217333
OHQO01010491
[OHQO] human gut metagenome; feces
1461
1535
+
His
GTG
[ENA]
¢þ
>WENV182220453
OHQS01000396
[OHQS] human gut metagenome; feces
17162
17236
+
His
GTG
[ENA]
¢þ
>WENV182223576
OHRA01001173
[OHRA] human gut metagenome; feces
4682
4608
-
His
GTG
[ENA]
¢þ
>WENV182235196
OHRS01013272
[OHRS] human gut metagenome; feces
200
126
-
His
GTG
[ENA]
¢þ
>WENV182236159
OHRU01002203
[OHRU] human gut metagenome; feces
1334
1259
-
His
GTG
[ENA]
¢þ
>WENV182237560
OHRX01001936
[OHRX] human gut metagenome; feces
204
131
-
His
GTG
[ENA]
¢þ
>WENV182243739
OHSI01002966
[OHSI] human gut metagenome; feces
2986
2911
-
His
GTG
[ENA]
¢þ
>WENV182246625
OHSM01000401
[OHSM] human gut metagenome; feces
16097
16023
-
His
GTG
[ENA]
¢þ
>WENV182247758
OHSO01000024
[OHSO] human gut metagenome; feces
34663
34736
+
His
GTG
[ENA]
¢þ
>WENV182264698
OHTV01000244
[OHTV] human gut metagenome; feces
2649
2574
-
His
GTG
[ENA]
¢þ
>WENV182267148
OHTZ01003652
[OHTZ] human gut metagenome; feces
4688
4762
+
His
GTG
[ENA]
¢þ
>WENV182269355
OHUD01000069
[OHUD] human gut metagenome; feces
26139
26213
+
His
GTG
[ENA]
¢þ
>WENV182270080
OHUE01000044
[OHUE] human gut metagenome; feces
10028
10101
+
His
GTG
[ENA]
¢þ
>WENV182274421
OHUK01000390
[OHUK] human gut metagenome; feces
17162
17236
+
His
GTG
[ENA]
¢þ
>WENV182514488
OIWM01011086
[OIWM] human gut metagenome; faeces
1404
1330
-
His
GTG
[ENA]
¢þ
>WENV182522114
OIWS01000063
[OIWS] human gut metagenome; faeces
83855
83929
+
His
GTG
[ENA]
¢þ
>WENV182524454
OIWT01000227
[OIWT] human gut metagenome; faeces
14604
14531
-
His
GTG
[ENA]
¢þ
>WENV182525088
OIWT01001215
[OIWT] human gut metagenome; faeces
12514
12589
+
His
GTG
[ENA]
¢þ
>WENV182527567
OIWU01000412
[OIWU] human gut metagenome; faeces
34292
34365
+
His
GTG
[ENA]
¢þ
>WENV182531886
OIXA01000436
[OIXA] human gut metagenome; faeces
24386
24459
+
His
GTG
[ENA]
¢þ
>WENV182874745
OKRW01029654
[OKRW] human gut metagenome; faeces
776
703
-
His
GTG
[ENA]
¢þ
>WENV182892798
OKSI01006231
[OKSI] human gut metagenome; feces
2777
2703
-
His
GTG
[ENA]
¢þ
>WENV182895793
OKSN01000838
[OKSN] human gut metagenome; feces
12567
12642
+
His
GTG
[ENA]
¢þ
>WENV182896749
OKSO01002122
[OKSO] human gut metagenome; feces
4678
4752
+
His
GTG
[ENA]
¢þ
>WENV182900413
OKSU01000016
[OKSU] human gut metagenome; feces
78282
78357
+
His
GTG
[ENA]
¢þ
>WENV182902099
OKSW01000803
[OKSW] human gut metagenome; feces
691
616
-
His
GTG
[ENA]
¢þ
>WENV182905058
OKTB01001909
[OKTB] human gut metagenome; feces
6242
6169
-
His
GTG
[ENA]
¢þ
>WENV182905517
OKTC01000146
[OKTC] human gut metagenome; feces
21871
21796
-
His
GTG
[ENA]
¢þ
>WENV182912355
OKTM01000286
[OKTM] human gut metagenome; feces
22365
22290
-
His
GTG
[ENA]
¢þ
>WENV182914976
OKTR01000410
[OKTR] human gut metagenome; feces
71
145
+
His
GTG
[ENA]
¢þ
>WENV182958000
OKWH01000408
[OKWH] human gut metagenome; human gut
11057
11131
+
His
GTG
[ENA]
¢þ
>WENV182963746
OKWR01000026
[OKWR] human gut metagenome; human gut
208208
208134
-
His
GTG
[ENA]
¢þ
>WENV183028077
OLFV01000969
[OLFV] human gut metagenome; faeces
7504
7579
+
His
GTG
[ENA]
¢þ
>WENV183036020
OLGA01000062
[OLGA] human gut metagenome; faeces
1541
1467
-
His
GTG
[ENA]
¢þ
>WENV183044694
OLGE01002060
[OLGE] human gut metagenome; faeces
18703
18630
-
His
GTG
[ENA]
¢þ
>WENV183100117
OLNF01049521
[OLNF] human gut metagenome; faeces
387
462
+
His
GTG
[ENA]
¢þ
>WENV183157889
OLOT01006595
[OLOT] human gut metagenome; faeces
2896
2970
+
His
GTG
[ENA]
¢þ
>WENV183159143
OLOU01001002
[OLOU] human gut metagenome; faeces
17152
17227
+
His
GTG
[ENA]
¢þ
>WENV183162006
OLOV01037421
[OLOV] human gut metagenome; faeces
558
631
+
His
GTG
[ENA]
¢þ
>WENV183239007
OLRA01000123
[OLRA] human gut metagenome; faeces
12681
12756
+
His
GTG
[ENA]
¢þ
>WENV183346690
OLWT01000027
[OLWT] human gut metagenome; feces
50251
50325
+
His
GTG
[ENA]
¢þ
>WENV183351590
OLWZ01000026
[OLWZ] human gut metagenome; feces
50033
50107
+
His
GTG
[ENA]
¢þ
>WENV183364609
OLXN01000026
[OLXN] human gut metagenome; feces
50250
50324
+
His
GTG
[ENA]
¢þ
>WENV183640802
OQVL01011169
[OQVL] human gut metagenome; human gut
75
2
-
His
GTG
[ENA]
¢þ
>WENV183642495
OQVN01005110
[OQVN] human gut metagenome; human gut
3067
3140
+
His
GTG
[ENA]
¢þ
>WENV183645886
OQVQ01039237
[OQVQ] human gut metagenome; human gut
118
193
+
His
GTG
[ENA]
¢þ
>WENV183646375
OQVR01001903
[OQVR] human gut metagenome; human gut
1487
1560
+
His
GTG
[ENA]
¢þ
>WENV183647534
OQVS01001145
[OQVS] human gut metagenome; human gut
4776
4850
+
His
GTG
[ENA]
¢þ
>WENV183650623
OQVT01031728
[OQVT] human gut metagenome; human gut
1143
1218
+
His
GTG
[ENA]
¢þ
>WENV183651457
OQVU01000097
[OQVU] human gut metagenome; human gut
22031
21956
-
His
GTG
[ENA]
¢þ
>WENV183653010
OQVZ01001606
[OQVZ] human gut metagenome; human gut
75
2
-
His
GTG
[ENA]
¢þ
>WENV183656986
OQWI01001319
[OQWI] human gut metagenome; human gut
10081
10156
+
His
GTG
[ENA]
¢þ
>WENV183657467
OQWI01013134
[OQWI] human gut metagenome; human gut
950
877
-
His
GTG
[ENA]
¢þ
>WENV183658146
OQWM01000440
[OQWM] human gut metagenome; human gut
21660
21587
-
His
GTG
[ENA]
¢þ
>C191065557
CP029758
Bacillota
Clostridium sp. AWRP [CP029758]
3925432
3925357
-
His
GTG
-
¡û
>W141569572
JIDX01000068
Bacillota
Clostridium scatologenes [JIDX]
273
198
-
His
GTG
[ENA]
¡û
>C141008130
CP006763
Bacillota
Clostridium autoethanogenum DSM 10061 [CP006763]
1649790
1649715
-
His
GTG
[Ensembl]
¡û
>C151062276
CP009933
Bacillota
Clostridium scatologenes ATCC 25775 [CP009933]
5003532
5003607
+
His
GTG
[Ensembl]
¡û
>C10103601
CP001666
Bacillota
Clostridium ljungdahlii DSM 13528 [CP001666]
3992613
3992538
-
His
GTG
[Ensembl]
¡û
>C161041792
CP012395
Bacillota
Clostridium autoethanogenum DSM 10061 [CP012395]
1649891
1649816
-
His
GTG
-
¡û
>W1610635668
LITQ01000012
Bacillota
Clostridium coskatii [LITQ]
116128
116203
+
His
GTG
[ENA]
¡û
>W1610635727
LITS01000001
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
22630
22705
+
His
GTG
[ENA]
¡û
>W1610635829
LITT01000035
Bacillota
Clostridium ljungdahlii [LITT]
292088
292013
-
His
GTG
[ENA]
¡û
>W1610888030
LROR01000034
Bacillota
Clostridium coskatii [LROR]
114615
114690
+
His
GTG
[ENA]
¡û
>W1710558923
FOMG01000003
Bacillota
Clostridium uliginosum [FOMG]
233589
233664
+
His
GTG
[ENA]
¡û
>W1710558930
FOMG01000003
Bacillota
Clostridium uliginosum [FOMG]
234187
234262
+
His
GTG
[ENA]
¡û
>W1710770376
LITQ01000012
Bacillota
Clostridium coskatii [LITQ]
116128
116203
+
His
GTG
[ENA]
¡û
>W1710770437
LITR01000001
Bacillota
Clostridium autoethanogenum [LITR]
313281
313356
+
His
GTG
[ENA]
¡û
>W1710770500
LITS01000001
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
22630
22705
+
His
GTG
[ENA]
¡û
>W1710770602
LITT01000035
Bacillota
Clostridium ljungdahlii [LITT]
292088
292013
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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