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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281457 (122 seq.)
>W1710786665
LJJB01000010
Bacillota
Brevibacillus choshinensis [LJJB]
1970261
1970337
+
Met
CAT
[ENA]
¡û
>W1710786680
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
71
147
+
Met
CAT
[ENA]
¡û
>W1710786707
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
1660785
1660709
-
Met
CAT
[ENA]
¡û
>W1710786720
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
1199023
1198947
-
Met
CAT
[ENA]
¡û
>W1710786741
LJJB01000015
Bacillota
Brevibacillus choshinensis [LJJB]
280306
280230
-
Met
CAT
[ENA]
¡û
>W1711009630
LQQV01000028
Bacillota
Brevibacillus parabrevis [LQQV]
262
338
+
Met
CAT
[ENA]
¡û
>W1711009653
LQQV01000062
Bacillota
Brevibacillus parabrevis [LQQV]
453
529
+
Met
CAT
[ENA]
¡û
>W1711009675
LQQV01000069
Bacillota
Brevibacillus parabrevis [LQQV]
122397
122473
+
Met
CAT
[ENA]
¡û
>W1711009724
LQQV01000133
Bacillota
Brevibacillus parabrevis [LQQV]
639
715
+
Met
CAT
[ENA]
¡û
>W1711168639
LVYG01000012
Bacillota
Brevibacillus brevis [LVYG]
264
340
+
Met
CAT
[ENA]
¡û
>W1711168668
LVYG01000017
Bacillota
Brevibacillus brevis [LVYG]
142
66
-
Met
CAT
[ENA]
¡û
>W1711168696
LVYG01000040
Bacillota
Brevibacillus brevis [LVYG]
434
510
+
Met
CAT
[ENA]
¡û
>W131006809
AHKL01000042
Bacillota
Brevibacillus brevis FJAT-0809-GLX [AHKL]
116924
117000
+
Met
CAT
[ENA]
¡û
>W131006832
AHKL01000063
Bacillota
Brevibacillus brevis FJAT-0809-GLX [AHKL]
414
490
+
Met
CAT
[ENA]
¡û
>W131086518
AOBR01000279
Bacillota
Brevibacillus agri BAB-2500 [AOBR]
305
381
+
Met
CAT
[ENA]
¡û
>W1711800011
MXAR01000023
Bacillota
Brevibacillus brevis [MXAR]
2813
2889
+
Met
CAT
[ENA]
¡û
>W1711800056
MXAR01000040
Bacillota
Brevibacillus brevis [MXAR]
1622
1546
-
Met
CAT
[ENA]
¡û
>W141026711
AKYF01000003
Bacillota
Brevibacillus brevis X23 [AKYF]
125934
126010
+
Met
CAT
[ENA]
¡û
>W141026752
AKYF01000014
Bacillota
Brevibacillus brevis X23 [AKYF]
304
380
+
Met
CAT
[ENA]
¡û
>W141093486
AVBJ01000025
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
105083
105007
-
Met
CAT
[ENA]
¡û
>W141093529
AVBJ01000054
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
24288
24212
-
Met
CAT
[ENA]
¡û
>W141093550
AVBJ01000077
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
98488
98412
-
Met
CAT
[ENA]
¡û
>W141093564
AVBJ01000082
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
1055
979
-
Met
CAT
[ENA]
¡û
>W141185451
AYJU01000015
Bacillota
Brevibacillus panacihumi W25 [AYJU]
423710
423634
-
Met
CAT
[ENA]
¡û
>W141185473
AYJU01000016
Bacillota
Brevibacillus panacihumi W25 [AYJU]
471509
471433
-
Met
CAT
[ENA]
¡û
>W141185488
AYJU01000017
Bacillota
Brevibacillus panacihumi W25 [AYJU]
859445
859369
-
Met
CAT
[ENA]
¡û
>W141185540
AYJU01000018
Bacillota
Brevibacillus panacihumi W25 [AYJU]
257600
257524
-
Met
CAT
[ENA]
¡û
>W141291593
JATL01000091
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
223
299
+
Met
CAT
[ENA]
¡û
>W141291610
JATL01000126
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
865
789
-
Met
CAT
[ENA]
¡û
>W141291632
JATL01000138
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
140
216
+
Met
CAT
[ENA]
¡û
>WENV183525011
ONZT01030974
[ONZT] human gut metagenome; human gut
6
79
+
fMet
CAT
[ENA]
¢þ
>WENV170594342
FUFK011280388
[FUFK] metagenome; unknown
204
128
-
Met
CAT
[ENA]
¢þ
>WENV170594566
FUFK011364673
[FUFK] metagenome; unknown
179
103
-
Met
CAT
[ENA]
¢þ
>C181030571
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
110055
110131
+
Met
CAT
-
¡û
>C181030621
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
5613455
5613531
+
Met
CAT
-
¡û
>C181030652
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
6033973
6034049
+
Met
CAT
-
¡û
>C181030672
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
3584396
3584320
-
Met
CAT
-
¡û
>C181082003
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
151629
151705
+
Met
CAT
-
¡û
>C181082034
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
563938
564014
+
Met
CAT
-
¡û
>C181082047
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
1151456
1151532
+
Met
CAT
-
¡û
>C181082080
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
4549327
4549251
-
Met
CAT
-
¡û
>C181188392
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
150708
150784
+
Met
CAT
-
¡û
>C181188423
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
552384
552460
+
Met
CAT
-
¡û
>C181188436
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
1137122
1137198
+
Met
CAT
-
¡û
>C181188470
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
4365443
4365367
-
Met
CAT
-
¡û
>C191041868
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
2099472
2099548
+
Met
CAT
-
¡û
>C191041900
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
5292997
5292921
-
Met
CAT
-
¡û
>C191041913
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
4815812
4815736
-
Met
CAT
-
¡û
>C191041967
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
400839
400763
-
Met
CAT
-
¡û
>C191207551
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
175095
175171
+
Met
CAT
-
¡û
>C191207571
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
1872740
1872816
+
Met
CAT
-
¡û
>C191207612
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
5687587
5687511
-
Met
CAT
-
¡û
>C191207625
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
5098596
5098520
-
Met
CAT
-
¡û
>C09101409
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
145074
145150
+
Met
CAT
[Ensembl]
¡û
>C09101440
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
545761
545837
+
Met
CAT
[Ensembl]
¡û
>C09101453
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
1111046
1111122
+
Met
CAT
[Ensembl]
¡û
>C09101487
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
4340515
4340439
-
Met
CAT
[Ensembl]
¡û
>W1810001176
BEXF01000014
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
794
870
+
Met
CAT
[ENA]
¡û
>W1810001214
BEXF01000028
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
41025
41101
+
Met
CAT
[ENA]
¡û
>W1810001227
BEXF01000040
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
34683
34607
-
Met
CAT
[ENA]
¡û
>W1810001240
BEXF01000104
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
740
664
-
Met
CAT
[ENA]
¡û
>W1810389837
PXXZ01000004
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
713
789
+
Met
CAT
[ENA]
¡û
>W1810389860
PXXZ01000009
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
224033
223957
-
Met
CAT
[ENA]
¡û
>W1810389882
PXXZ01000024
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
140290
140214
-
Met
CAT
[ENA]
¡û
>W1810389914
PXXZ01000041
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
123081
123157
+
Met
CAT
[ENA]
¡û
>W1810391237
PXZL01000001
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
234
310
+
Met
CAT
[ENA]
¡û
>W1810391262
PXZL01000008
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
925
849
-
Met
CAT
[ENA]
¡û
>W1810391286
PXZL01000014
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
19860
19784
-
Met
CAT
[ENA]
¡û
>W1810391339
PXZL01000048
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
12436
12360
-
Met
CAT
[ENA]
¡û
>W1810391353
PXZM01000002
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
992
916
-
Met
CAT
[ENA]
¡û
>W1810391368
PXZM01000006
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
508
584
+
Met
CAT
[ENA]
¡û
>W1810391430
PXZM01000045
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
462
538
+
Met
CAT
[ENA]
¡û
>W1810391457
PXZM01000068
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
19041
18965
-
Met
CAT
[ENA]
¡û
>W1810391482
PXZN01000016
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
493
569
+
Met
CAT
[ENA]
¡û
>W1810391522
PXZN01000019
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
618
694
+
Met
CAT
[ENA]
¡û
>W1810391535
PXZN01000020
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
449
525
+
Met
CAT
[ENA]
¡û
>W1810391567
PXZN01000034
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
119849
119925
+
Met
CAT
[ENA]
¡û
>W1810391593
PXZO01000020
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
586
662
+
Met
CAT
[ENA]
¡û
>W1810391603
PXZO01000041
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
206
282
+
Met
CAT
[ENA]
¡û
>W1810391659
PXZO01000067
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
132845
132921
+
Met
CAT
[ENA]
¡û
>W1810391672
PXZO01000074
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
590
666
+
Met
CAT
[ENA]
¡û
>W1810787373
QRDR01000007
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
832
908
+
Met
CAT
[ENA]
¡û
>W1810787386
QRDR01000008
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
316600
316524
-
Met
CAT
[ENA]
¡û
>W1810787400
QRDR01000011
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
16
92
+
Met
CAT
[ENA]
¡û
>W1810787422
QRDR01000017
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
123066
123142
+
Met
CAT
[ENA]
¡û
>W1511629635
LDCN01000001
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
1166458
1166382
-
Met
CAT
[ENA]
¡û
>W1511629708
LDCN01000004
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
125
201
+
Met
CAT
[ENA]
¡û
>W1511629732
LDCN01000006
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
322809
322733
-
Met
CAT
[ENA]
¡û
>W1511629747
LDCN01000012
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
124016
124092
+
Met
CAT
[ENA]
¡û
>W1511629757
LDCN01000012
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
127045
127121
+
Met
CAT
[ENA]
¡û
>W1511645808
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
776
852
+
Met
CAT
[ENA]
¡û
>W1511645821
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
585515
585591
+
Met
CAT
[ENA]
¡û
>W1511645872
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
6042353
6042429
+
Met
CAT
[ENA]
¡û
>W1511645892
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
3813592
3813516
-
Met
CAT
[ENA]
¡û
>W1511699541
LGIQ01000005
Bacillota
Brevibacillus reuszeri DSM 9887 [LGIQ]
203
279
+
Met
CAT
[ENA]
¡û
>W1511699560
LGIQ01000007
Bacillota
Brevibacillus reuszeri DSM 9887 [LGIQ]
244
320
+
Met
CAT
[ENA]
¡û
>W1511699618
LGIQ01000020
Bacillota
Brevibacillus reuszeri DSM 9887 [LGIQ]
1008
932
-
Met
CAT
[ENA]
¡û
>W1511700071
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
424716
424792
+
Met
CAT
[ENA]
¡û
>W1511700126
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
4511794
4511718
-
Met
CAT
[ENA]
¡û
>W1511700155
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
4112190
4112114
-
Met
CAT
[ENA]
¡û
>W1511700168
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
3589225
3589149
-
Met
CAT
[ENA]
¡û
>W121085023
AKIX01000121
Bacillota
Brevibacillus sp. BC25 [AKIX]
293
369
+
Met
CAT
[ENA]
¡û
>W1610650520
LJJB01000010
Bacillota
Brevibacillus choshinensis [LJJB]
1970261
1970337
+
Met
CAT
[ENA]
¡û
>W1610650535
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
71
147
+
Met
CAT
[ENA]
¡û
>W1610650562
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
1660785
1660709
-
Met
CAT
[ENA]
¡û
>W1610650575
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
1199023
1198947
-
Met
CAT
[ENA]
¡û
>W1610650596
LJJB01000015
Bacillota
Brevibacillus choshinensis [LJJB]
280306
280230
-
Met
CAT
[ENA]
¡û
>W1610858150
LQQV01000028
Bacillota
Brevibacillus parabrevis [LQQV]
262
338
+
Met
CAT
[ENA]
¡û
>W1610858173
LQQV01000062
Bacillota
Brevibacillus parabrevis [LQQV]
453
529
+
Met
CAT
[ENA]
¡û
>W1610858195
LQQV01000069
Bacillota
Brevibacillus parabrevis [LQQV]
122397
122473
+
Met
CAT
[ENA]
¡û
>W1610858244
LQQV01000133
Bacillota
Brevibacillus parabrevis [LQQV]
639
715
+
Met
CAT
[ENA]
¡û
>W1610978434
LVYG01000012
Bacillota
Brevibacillus brevis [LVYG]
264
340
+
Met
CAT
[ENA]
¡û
>W1610978463
LVYG01000017
Bacillota
Brevibacillus brevis [LVYG]
142
66
-
Met
CAT
[ENA]
¡û
>W1610978491
LVYG01000040
Bacillota
Brevibacillus brevis [LVYG]
434
510
+
Met
CAT
[ENA]
¡û
>W1710081086
BDFB01000006
Bacillota
Brevibacillus brevis [BDFB]
545461
545385
-
Met
CAT
[ENA]
¡û
>W1710081124
BDFB01000013
Bacillota
Brevibacillus brevis [BDFB]
247092
247016
-
Met
CAT
[ENA]
¡û
>W1710081159
BDFB01000017
Bacillota
Brevibacillus brevis [BDFB]
125300
125376
+
Met
CAT
[ENA]
¡û
>W1710081179
BDFB01000022
Bacillota
Brevibacillus brevis [BDFB]
34500
34424
-
Met
CAT
[ENA]
¡û
>W1710566095
FORT01000001
Bacillota
Brevibacillus centrosporus OK042 [FORT]
648081
648005
-
Met
CAT
[ENA]
¡û
>W1710566113
FORT01000003
Bacillota
Brevibacillus centrosporus OK042 [FORT]
455754
455678
-
Met
CAT
[ENA]
¡û
>W1710566126
FORT01000004
Bacillota
Brevibacillus centrosporus OK042 [FORT]
631
707
+
Met
CAT
[ENA]
¡û
>W1710566178
FORT01000018
Bacillota
Brevibacillus centrosporus OK042 [FORT]
114423
114499
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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