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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281460 (90 seq.)
>W1711088319
LSYT01000013
Bacteroidota
Flavobacterium chilense [LSYT]
16874
16799
-
Met
CAT
[ENA]
¡û
>W1711088321
LSYT01000017
Bacteroidota
Flavobacterium chilense [LSYT]
27716
27643
-
Met
CAT
[ENA]
¡û
>W1711431920
MIKE01000028
Bacteroidota
Flavobacterium tructae spartansii [MIKE]
239503
239428
-
Met
CAT
[ENA]
¡û
>W1711431922
MIKE01000028
Bacteroidota
Flavobacterium tructae spartansii [MIKE]
168340
168265
-
Met
CAT
[ENA]
¡û
>W131181275
ARNT01000029
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
232898
232823
-
Met
CAT
[ENA]
¡û
>W131053361
AMZY02000004
Bacteroidota
Mariniradius saccharolyticus AK6 [AMZY]
132199
132274
+
Met
CAT
[ENA]
¡û
>W1711712605
MTCC01000011
Bacteroidota
Flavobacterium psychrophilum [MTCC]
207826
207751
-
Met
CAT
[ENA]
¡û
>W1711712606
MTCC01000011
Bacteroidota
Flavobacterium psychrophilum [MTCC]
207719
207644
-
Met
CAT
[ENA]
¡û
>W1711713522
MTDD01000033
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
81
156
+
Met
CAT
[ENA]
¡û
>W1711713523
MTDD01000033
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
187
262
+
Met
CAT
[ENA]
¡û
>W1711713539
MTDD01000047
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
287
212
-
Met
CAT
[ENA]
¡û
>W1711713540
MTDD01000047
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
181
106
-
Met
CAT
[ENA]
¡û
>W1711713541
MTDD01000047
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
75
2
-
Met
CAT
[ENA]
¡û
>W1711738013
MUAW01000003
Bacteroidota
Flavobacterium columnare [MUAW]
61804
61729
-
Met
CAT
[ENA]
¡û
>W1711738014
MUAW01000003
Bacteroidota
Flavobacterium columnare [MUAW]
61695
61620
-
Met
CAT
[ENA]
¡û
>W1711738015
MUAW01000003
Bacteroidota
Flavobacterium columnare [MUAW]
61586
61511
-
Met
CAT
[ENA]
¡û
>W1711738016
MUAW01000003
Bacteroidota
Flavobacterium columnare [MUAW]
61477
61402
-
Met
CAT
[ENA]
¡û
>W1711743980
MUFW01000001
Bacteroidota
Flavobacterium sp. LM4 [MUFW]
2657435
2657360
-
Met
CAT
[ENA]
¡û
>W1711743996
MUFW01000002
Bacteroidota
Flavobacterium sp. LM4 [MUFW]
588268
588343
+
Met
CAT
[ENA]
¡û
>W1711966533
NCWQ01000014
Bacteroidota
Flavobacterium sp. AJR [NCWQ]
51739
51814
+
Met
CAT
[ENA]
¡û
>W1711966568
NCWQ01000090
Bacteroidota
Flavobacterium sp. AJR [NCWQ]
5127
5052
-
Met
CAT
[ENA]
¡û
>W1711966583
NCWQ01000169
Bacteroidota
Flavobacterium sp. AJR [NCWQ]
2676
2751
+
Met
CAT
[ENA]
¡û
>w023504
AAXX01000002
Bacteroidota
Flavobacteria bacterium BAL38 [AAXX]
417305
417382
+
Met
CAT
[ENA]
¡û
>w023503
AAXX01000002
Bacteroidota
Flavobacteria bacterium BAL38 [AAXX]
417026
417103
+
Met
CAT
[ENA]
¡û
>C171067423
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
716256
716331
+
Met
CAT
-
¡û
>C171067424
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
717136
717211
+
Met
CAT
-
¡û
>C171067460
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
2132534
2132459
-
Met
CAT
-
¡û
>WENV180591425
OCOV01020754
[OCOV] marine metagenome; ENVO:01000301
297
224
-
fMet
CAT
[ENA]
¢þ
>WENV180593878
OCOY01001858
[OCOY] marine metagenome; ENVO:00002010
1747
1820
+
fMet
CAT
[ENA]
¢þ
>WENV180593879
OCOY01001858
[OCOY] marine metagenome; ENVO:00002010
1854
1927
+
fMet
CAT
[ENA]
¢þ
>WENV181120347
OEFJ01034128
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
331
258
-
fMet
CAT
[ENA]
¢þ
>WENV181168443
OEIU01366797
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
164
91
-
fMet
CAT
[ENA]
¢þ
>WENV181838537
OGVN01002564
[OGVN] freshwater metagenome; freshwater
435
508
+
fMet
CAT
[ENA]
¢þ
>WENV181844796
OGVW01031946
[OGVW] freshwater metagenome; freshwater
176
249
+
fMet
CAT
[ENA]
¢þ
>WENV181844797
OGVW01031946
[OGVW] freshwater metagenome; freshwater
358
431
+
fMet
CAT
[ENA]
¢þ
>W141188432
AYMS01000012
Bacteroidota
Myroides odoratimimus H1bi [AYMS]
17737
17812
+
Met
CAT
[ENA]
¡û
>W141188454
AYMS01000034
Bacteroidota
Myroides odoratimimus H1bi [AYMS]
24142
24067
-
Met
CAT
[ENA]
¡û
>W141188455
AYMS01000034
Bacteroidota
Myroides odoratimimus H1bi [AYMS]
23262
23187
-
Met
CAT
[ENA]
¡û
>WENV183725836
PJQF01022703
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
256
183
-
fMet
CAT
[ENA]
¢þ
>WENV183726907
PJTO01000495
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
845
772
-
fMet
CAT
[ENA]
¢þ
>WENV183727660
PJTP01000066
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
2063
2136
+
fMet
CAT
[ENA]
¢þ
>WENV183729059
PJTQ01003565
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
2865
2938
+
fMet
CAT
[ENA]
¢þ
>WENV183734853
PJUA01000054
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
3976
3903
-
fMet
CAT
[ENA]
¢þ
>WENV183734907
PJUA01000132
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
63169
63096
-
fMet
CAT
[ENA]
¢þ
>WENV183740172
PJUF01000587
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
2859
2932
+
fMet
CAT
[ENA]
¢þ
>WENV170010889
APMI01033496
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2996
3069
+
Met
CAT
[ENA]
¢þ
>WENV170680681
LFEF01009940
[LFEF] freshwater metagenome; waterbloom
10878
10803
-
Met
CAT
[ENA]
¢þ
>WENV170711587
LNFM01005910
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
10500
10425
-
Met
CAT
[ENA]
¢þ
>WENV170721568
LSQX01195221
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3782
3857
+
Met
CAT
[ENA]
¢þ
>WENV170826537
MDSY01112360
[MDSY] marine metagenome; seawater
97
22
-
Met
CAT
[ENA]
¢þ
>C191120405
CP034157
Bacteroidota
Cloacibacterium normanense NRS-1 [CP034157]
855099
855026
-
Met
CAT
-
¡û
>C191132760
CP034930
Bacteroidota
Apibacter raozihei HY041 [CP034930]
2902553
2902480
-
Met
CAT
-
¡û
>C191210737
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
2120889
2120962
+
Met
CAT
-
¡û
>W1910184724
BJSZ01000013
Bacteroidota
Flavobacterium psychrophilum NNS6-1804 [BJSZ]
18099
18172
+
Met
CAT
[ENA]
¡û
>W1910184725
BJSZ01000013
Bacteroidota
Flavobacterium psychrophilum NNS6-1804 [BJSZ]
18206
18279
+
Met
CAT
[ENA]
¡û
>W1910502981
FYBY01000022
Bacteroidota
Flavobacterium psychrophilum CH8 [FYBY]
159775
159702
-
Met
CAT
[ENA]
¡û
>W1910502982
FYBY01000022
Bacteroidota
Flavobacterium psychrophilum CH8 [FYBY]
159668
159595
-
Met
CAT
[ENA]
¡û
>W1910503150
FYCD01000025
Bacteroidota
Flavobacterium psychrophilum DK001 [FYCD]
159736
159663
-
Met
CAT
[ENA]
¡û
>W1910547020
FZNL01000009
Bacteroidota
Flavobacterium sp. ov086 ov086 OV086 [FZNL]
22616
22543
-
Met
CAT
[ENA]
¡û
>W1910547047
FZNL01000041
Bacteroidota
Flavobacterium sp. ov086 ov086 OV086 [FZNL]
25938
26011
+
Met
CAT
[ENA]
¡û
>W1911747568
QWDM01000017
Bacteroidota
Flavobacterium cupreum CCM 8825 [QWDM]
132967
133040
+
Met
CAT
[ENA]
¡û
>W1911747578
QWDM01000027
Bacteroidota
Flavobacterium cupreum CCM 8825 [QWDM]
104
31
-
Met
CAT
[ENA]
¡û
>W1810282710
PSZL01000022
Bacteroidota
Apibacter sp. wkB309 [PSZL]
502918
502993
+
Met
CAT
[ENA]
¡û
>W1810282746
PSZM01000040
Bacteroidota
Apibacter adventoris wkB301 [PSZM]
121745
121818
+
Met
CAT
[ENA]
¡û
>W1810282781
PSZN01000019
Bacteroidota
Apibacter adventoris wkB180 [PSZN]
175850
175923
+
Met
CAT
[ENA]
¡û
>W1810676068
QKLS01000016
Bacteroidota
Flavobacterium sp. GV030 [QKLS]
51524
51597
+
Met
CAT
[ENA]
¡û
>W1810676070
QKLS01000016
Bacteroidota
Flavobacterium sp. GV030 [QKLS]
100151
100224
+
Met
CAT
[ENA]
¡û
>W1810684416
QKXH01000012
Bacteroidota
Flavobacterium aquariorum IMCC34762 [QKXH]
160683
160756
+
Met
CAT
[ENA]
¡û
>W1810684417
QKXH01000012
Bacteroidota
Flavobacterium aquariorum IMCC34762 [QKXH]
160791
160864
+
Met
CAT
[ENA]
¡û
>C151065107
CP010276
Bacteroidota
Flavobacterium psychrophilum PG2 [CP010276]
2217920
2217995
+
Met
CAT
-
¡û
>C151065108
CP010276
Bacteroidota
Flavobacterium psychrophilum PG2 [CP010276]
2218027
2218102
+
Met
CAT
-
¡û
>C121017014
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
3001676
3001601
-
Met
CAT
[Ensembl]
¡û
>C161095475
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
732576
732651
+
Met
CAT
-
¡û
>C161095476
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
732683
732758
+
Met
CAT
-
¡û
>C161095477
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
732792
732867
+
Met
CAT
-
¡û
>C161095478
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
732901
732976
+
Met
CAT
-
¡û
>W1610207146
FCOR01000002
Bacteroidota
Apibacter mensalis R-53146 [FCOR]
50744
50819
+
Met
CAT
[ENA]
¡û
>W1610535123
JRLY01000002
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
286235
286160
-
Met
CAT
[ENA]
¡û
>W1610637933
LIVM01000002
Bacteroidota
Apibacter mensalis [LIVM]
50744
50819
+
Met
CAT
[ENA]
¡û
>W1610922858
LSYT01000013
Bacteroidota
Flavobacterium chilense [LSYT]
16874
16799
-
Met
CAT
[ENA]
¡û
>W1610922860
LSYT01000017
Bacteroidota
Flavobacterium chilense [LSYT]
27716
27643
-
Met
CAT
[ENA]
¡û
>W1710207840
FCOR01000002
Bacteroidota
Apibacter mensalis R-53146 [FCOR]
50744
50819
+
Met
CAT
[ENA]
¡û
>W1710524986
FNJE01000001
Bacteroidota
Cloacibacterium normanense [FNJE]
23986
23911
-
Met
CAT
[ENA]
¡û
>W1710555808
FOJT01000001
Bacteroidota
Flavobacterium swingsii [FOJT]
433130
433205
+
Met
CAT
[ENA]
¡û
>W1710570195
FOUZ01000003
Bacteroidota
Algoriella xinjiangensis [FOUZ]
64179
64254
+
Met
CAT
[ENA]
¡û
>W1710570197
FOUZ01000003
Bacteroidota
Algoriella xinjiangensis [FOUZ]
66748
66823
+
Met
CAT
[ENA]
¡û
>W1710585722
FQWO01000004
Bacteroidota
Flavobacterium granuli [FQWO]
278861
278786
-
Met
CAT
[ENA]
¡û
>W1710585723
FQWO01000004
Bacteroidota
Flavobacterium granuli [FQWO]
278756
278681
-
Met
CAT
[ENA]
¡û
>W1710637359
JRLY01000002
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
286235
286160
-
Met
CAT
[ENA]
¡û
>W1710772706
LIVM01000002
Bacteroidota
Apibacter mensalis [LIVM]
50744
50819
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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