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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281461 (43 seq.)
>W1710786630
LJJB01000007
Bacillota
Brevibacillus choshinensis [LJJB]
1211885
1211961
+
Pro
GGG
[ENA]
¡û
>W1710876775
LMPN01000023
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
132315
132391
+
Pro
GGG
[ENA]
¡û
>W1711009625
LQQV01000013
Bacillota
Brevibacillus parabrevis [LQQV]
151912
151988
+
Pro
GGG
[ENA]
¡û
>W1711168633
LVYG01000002
Bacillota
Brevibacillus brevis [LVYG]
351624
351700
+
Pro
GGG
[ENA]
¡û
>W1711800003
MXAR01000017
Bacillota
Brevibacillus brevis [MXAR]
72652
72576
-
Pro
GGG
[ENA]
¡û
>W131006786
AHKL01000032
Bacillota
Brevibacillus brevis FJAT-0809-GLX [AHKL]
384409
384485
+
Pro
GGG
[ENA]
¡û
>W131086486
AOBR01000055
Bacillota
Brevibacillus agri BAB-2500 [AOBR]
40166
40090
-
Pro
GGG
[ENA]
¡û
>W141026734
AKYF01000010
Bacillota
Brevibacillus brevis X23 [AKYF]
381940
382016
+
Pro
GGG
[ENA]
¡û
>W141093468
AVBJ01000005
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
3582
3658
+
Pro
GGG
[ENA]
¡û
>W141185435
AYJU01000001
Bacillota
Brevibacillus panacihumi W25 [AYJU]
390835
390759
-
Pro
GGG
[ENA]
¡û
>W141291556
JATL01000002
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
206201
206277
+
Pro
GGG
[ENA]
¡û
>WENV170582583
FUFK010092793
[FUFK] metagenome; unknown
318
394
+
Pro
GGG
[ENA]
¢þ
>C181030588
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
1536857
1536933
+
Pro
GGG
-
¡û
>C181082064
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
2694848
2694924
+
Pro
GGG
-
¡û
>C181188454
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
2561096
2561172
+
Pro
GGG
-
¡û
>C191041932
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
3439245
3439169
-
Pro
GGG
-
¡û
>C191207643
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
3625071
3624995
-
Pro
GGG
-
¡û
>W1910181733
BJMH01000009
Bacillota
Brevibacillus parabrevis NBRC 12334 [BJMH]
57867
57943
+
Pro
GGG
[ENA]
¡û
>W1910183509
BJNU01000011
Bacillota
Brevibacillus brevis NBRC 15304 [BJNU]
19634
19710
+
Pro
GGG
[ENA]
¡û
>W1910183887
BJOD01000001
Bacillota
Brevibacillus agri NBRC 15538 [BJOD]
83815
83739
-
Pro
GGG
[ENA]
¡û
>W1910183943
BJOE01000009
Bacillota
Brevibacillus centrosporus NBRC 15540 [BJOE]
106062
105986
-
Pro
GGG
[ENA]
¡û
>W1910184248
BJOL01000002
Bacillota
Brevibacillus formosus NBRC 15716 [BJOL]
19751
19827
+
Pro
GGG
[ENA]
¡û
>W1910184320
BJON01000002
Bacillota
Brevibacillus reuszeri NBRC 15719 [BJON]
343994
344070
+
Pro
GGG
[ENA]
¡û
>C09101471
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
2535948
2536024
+
Pro
GGG
[Ensembl]
¡û
>W1810001156
BEXF01000003
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
195203
195127
-
Pro
GGG
[ENA]
¡û
>W1810389853
PXXZ01000006
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
363119
363195
+
Pro
GGG
[ENA]
¡û
>W1810391276
PXZL01000013
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
369334
369410
+
Pro
GGG
[ENA]
¡û
>W1810391360
PXZM01000003
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
448105
448029
-
Pro
GGG
[ENA]
¡û
>W1810391572
PXZN01000064
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
4243
4167
-
Pro
GGG
[ENA]
¡û
>W1810391639
PXZO01000052
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
151195
151119
-
Pro
GGG
[ENA]
¡û
>W1810787361
QRDR01000004
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
363202
363278
+
Pro
GGG
[ENA]
¡û
>W1511629660
LDCN01000002
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
369026
369102
+
Pro
GGG
[ENA]
¡û
>W1511645839
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
2009190
2009266
+
Pro
GGG
[ENA]
¡û
>W1511699596
LGIQ01000009
Bacillota
Brevibacillus reuszeri DSM 9887 [LGIQ]
1185715
1185639
-
Pro
GGG
[ENA]
¡û
>W1511700186
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
2089758
2089682
-
Pro
GGG
[ENA]
¡û
>W121084993
AKIX01000010
Bacillota
Brevibacillus sp. BC25 [AKIX]
19855
19931
+
Pro
GGG
[ENA]
¡û
>W121086607
AKKB01000118
Bacillota
Brevibacillus sp. CF112 [AKKB]
83829
83753
-
Pro
GGG
[ENA]
¡û
>W1610650485
LJJB01000007
Bacillota
Brevibacillus choshinensis [LJJB]
1211885
1211961
+
Pro
GGG
[ENA]
¡û
>W1610739121
LMPN01000023
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
132315
132391
+
Pro
GGG
[ENA]
¡û
>W1610858145
LQQV01000013
Bacillota
Brevibacillus parabrevis [LQQV]
151912
151988
+
Pro
GGG
[ENA]
¡û
>W1610978428
LVYG01000002
Bacillota
Brevibacillus brevis [LVYG]
351624
351700
+
Pro
GGG
[ENA]
¡û
>W1710081075
BDFB01000004
Bacillota
Brevibacillus brevis [BDFB]
1150959
1150883
-
Pro
GGG
[ENA]
¡û
>W1710566167
FORT01000012
Bacillota
Brevibacillus centrosporus OK042 [FORT]
49655
49731
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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