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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281465 (52 seq.)
>W1710857492
LMAI01000002
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
315919
315844
-
Gly
GCC
[ENA]
¡û
>W1710869834
LMKA01000079
Bacteroidota
Chryseobacterium sp. Leaf201 [LMKA]
123190
123265
+
Gly
GCC
[ENA]
¡û
>W1710876599
LMPJ01000001
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
1071220
1071145
-
Gly
GCC
[ENA]
¡û
>W1711072022
LSHB01000075
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
477
402
-
Gly
GCC
[ENA]
¡û
>W131220944
AUAA01000002
Bacteroidota
Epilithonimonas tenax DSM 16811 [AUAA]
194487
194562
+
Gly
GCC
[ENA]
¡û
>WENV180240061
OBDB01148694
[OBDB] human gut metagenome; human gut
81
154
+
Gly
GCC
[ENA]
¢þ
>WENV180240190
OBDB01234512
[OBDB] human gut metagenome; human gut
75
2
-
Gly
GCC
[ENA]
¢þ
>WENV180971669
ODUU01063288
[ODUU] human metagenome; G_DNA_Stool
90
17
-
Gly
GCC
[ENA]
¢þ
>WENV181492716
OGFY01051376
[OGFY] metagenome; Human gut stool
685
758
+
Gly
GCC
[ENA]
¢þ
>WENV181607363
OGLM01007468
[OGLM] metagenome; Human gut stool
3117
3190
+
Gly
GCC
[ENA]
¢þ
>WENV181640435
OGNF01000014
[OGNF] metagenome; Human gut stool
72944
72871
-
Gly
GCC
[ENA]
¢þ
>WENV181901525
OGXW01002413
[OGXW] human gut metagenome; faeces
11989
11914
-
Gly
GCC
[ENA]
¢þ
>WENV181901526
OGXW01002413
[OGXW] human gut metagenome; faeces
11856
11783
-
Gly
GCC
[ENA]
¢þ
>WENV181924474
OGYL01014793
[OGYL] human gut metagenome; faeces
2571
2646
+
Gly
GCC
[ENA]
¢þ
>WENV181924475
OGYL01014793
[OGYL] human gut metagenome; faeces
2709
2784
+
Gly
GCC
[ENA]
¢þ
>WENV182008427
OHBJ01000843
[OHBJ] human gut metagenome; faeces
18130
18057
-
Gly
GCC
[ENA]
¢þ
>WENV182747134
OJQV01000445
[OJQV] human gut metagenome; stool sample
20166
20093
-
Gly
GCC
[ENA]
¢þ
>W141291542
JASZ01000281
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
2451
2524
+
Gly
GCC
[ENA]
¡û
>WENV183649913
OQVT01007102
[OQVT] human gut metagenome; human gut
1458
1531
+
Gly
GCC
[ENA]
¢þ
>WENV183723597
PDYJ01002306
[PDYJ] gut metagenome; fecal pellets
446692
446619
-
Gly
GCC
[ENA]
¢þ
>WENV170559889
CXWL01167609
[CXWL] groundwater metagenome; biofilm material
182
109
-
Gly
GCC
[ENA]
¢þ
>C191116071
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
2765337
2765410
+
Gly
GCC
-
¡û
>C191120538
CP034161
Bacteroidota
Epilithonimonas vandammei F5649 [CP034161]
106415
106488
+
Gly
GCC
-
¡û
>C191132746
CP034930
Bacteroidota
Apibacter raozihei HY041 [CP034930]
1491064
1491137
+
Gly
GCC
-
¡û
>W141806152
JPLY01000001
Bacteroidota
Epilithonimonas lactis [JPLY]
369104
369029
-
Gly
GCC
[ENA]
¡û
>W141806194
JPLZ01000001
Bacteroidota
Chryseobacterium sp. FH1 FH1 [JPLZ]
175824
175749
-
Gly
GCC
[ENA]
¡û
>W141809151
JPRH01000001
Bacteroidota
Chryseobacterium soli [JPRH]
550248
550323
+
Gly
GCC
[ENA]
¡û
>W141816656
JQKA01000013
Bacteroidota
Chryseobacterium sp. OV259 [JQKA]
63924
63999
+
Gly
GCC
[ENA]
¡û
>W1911701720
QNVS01000023
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
13281
13354
+
Gly
GCC
[ENA]
¡û
>W1911701968
QNVV01000018
Bacteroidota
Chryseobacterium pennipullorum 7_F195 [QNVV]
9556
9481
-
Gly
GCC
[ENA]
¡û
>W1810193866
PKNN01000003
Bacteroidota
Chryseobacterium scophthalmum VV8 [PKNN]
95289
95216
-
Gly
GCC
[ENA]
¡û
>W1810282702
PSZL01000005
Bacteroidota
Apibacter sp. wkB309 [PSZL]
110089
110162
+
Gly
GCC
[ENA]
¡û
>W1810282756
PSZM01000046
Bacteroidota
Apibacter adventoris wkB301 [PSZM]
249027
249100
+
Gly
GCC
[ENA]
¡û
>W1810282762
PSZN01000001
Bacteroidota
Apibacter adventoris wkB180 [PSZN]
69693
69620
-
Gly
GCC
[ENA]
¡û
>W1511432294
JUGK01000012
Bacteroidota
Chryseobacterium sp. YR005 [JUGK]
351733
351806
+
Gly
GCC
[ENA]
¡û
>W1610207171
FCOR01000012
Bacteroidota
Apibacter mensalis R-53146 [FCOR]
60733
60806
+
Gly
GCC
[ENA]
¡û
>W1610596853
LELA01000157
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
445
372
-
Gly
GCC
[ENA]
¡û
>W1610637958
LIVM01000012
Bacteroidota
Apibacter mensalis [LIVM]
60733
60806
+
Gly
GCC
[ENA]
¡û
>W1610719873
LMAI01000002
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
315919
315844
-
Gly
GCC
[ENA]
¡û
>W1610732180
LMKA01000079
Bacteroidota
Chryseobacterium sp. Leaf201 [LMKA]
123190
123265
+
Gly
GCC
[ENA]
¡û
>W1610738945
LMPJ01000001
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
1071220
1071145
-
Gly
GCC
[ENA]
¡û
>W1610911282
LSHB01000075
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
477
402
-
Gly
GCC
[ENA]
¡û
>W1710207865
FCOR01000012
Bacteroidota
Apibacter mensalis R-53146 [FCOR]
60733
60806
+
Gly
GCC
[ENA]
¡û
>W1710514160
FNAS01000010
Bacteroidota
Riemerella columbipharyngis [FNAS]
32969
32894
-
Gly
GCC
[ENA]
¡û
>W1710514869
FNBH01000001
Bacteroidota
Epilithonimonas hungarica hungaricum [FNBH]
353381
353456
+
Gly
GCC
[ENA]
¡û
>W1710540578
FNWX01000043
Bacteroidota
Epilithonimonas hominis [FNWX]
1471
1546
+
Gly
GCC
[ENA]
¡û
>W1710550501
FOFI01000002
Bacteroidota
Epilithonimonas lactis [FOFI]
221977
221902
-
Gly
GCC
[ENA]
¡û
>W1710564834
FOQT01000004
Bacteroidota
Halpernia frigidisoli [FOQT]
40480
40555
+
Gly
GCC
[ENA]
¡û
>W1710595896
FTMF01000009
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
93937
94010
+
Gly
GCC
[ENA]
¡û
>W1710603556
FUZE01000001
Bacteroidota
Chryseobacterium balustinum [FUZE]
87022
86949
-
Gly
GCC
[ENA]
¡û
>W1710717858
LELA01000157
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
445
372
-
Gly
GCC
[ENA]
¡û
>W1710772731
LIVM01000012
Bacteroidota
Apibacter mensalis [LIVM]
60733
60806
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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