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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281468 (49 seq.)
>W1710875537
LMOM01000001
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
685868
685943
+
Thr
TGT
[ENA]
¡û
>W1711743900
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
648547
648622
+
Thr
TGT
[ENA]
¡û
>W1712080653
NHMK01000009
Deinococcota
Deinococcus indicus [NHMK]
1365
1290
-
Thr
TGT
[ENA]
¡û
>W131104600
APCS01000151
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
542
467
-
Thr
TGT
[ENA]
¡û
>W131178637
ARLS01000036
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
97739
97814
+
Thr
TGT
[ENA]
¡û
>W131213870
ATTJ01000001
Deinococcota
Deinococcus ficus 2009 [ATTJ]
555645
555720
+
Thr
TGT
[ENA]
¡û
>W131237083
AUMV01000002
Deinococcota
Deinococcus ficus DSM 19119 [AUMV]
1737
1662
-
Thr
TGT
[ENA]
¡û
>C007758
CP000359
Deinococcota
Deinococcus geothermalis DSM 11300 [CP000359]
700331
700256
-
Thr
TGT
[Ensembl]
¡û
>C007953
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2063911
2063836
-
Thr
TGT
[Ensembl]
¡û
>WENV180232529
OBCO01000744
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
553
478
-
Thr
TGT
[ENA]
¢þ
>WENV180233502
OBCP01000719
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
553
478
-
Thr
TGT
[ENA]
¢þ
>WENV180569935
OCLR01000947
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
553
478
-
Thr
TGT
[ENA]
¢þ
>WENV180570877
OCLS01000941
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
553
478
-
Thr
TGT
[ENA]
¢þ
>WENV180571853
OCLT01000678
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
553
478
-
Thr
TGT
[ENA]
¢þ
>WENV180574125
OCLW01000738
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
553
478
-
Thr
TGT
[ENA]
¢þ
>WENV180640142
OCRL01000672
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
553
478
-
Thr
TGT
[ENA]
¢þ
>WENV180641116
OCRM01000728
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
553
478
-
Thr
TGT
[ENA]
¢þ
>WENV181223666
OFDC01064364
[OFDC] hot springs metagenome; Water
242
317
+
Thr
TGT
[ENA]
¢þ
>W141154792
AXLL01000196
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
5087
5162
+
Thr
TGT
[ENA]
¡û
>W09101993
AAHE01000003
Deinococcota
Deinococcus geothermalis DSM 11300 [AAHE]
218015
217940
-
Thr
TGT
[ENA]
¡û
>C181134318
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
687478
687403
-
Thr
TGT
-
¡û
>C181185114
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
867444
867372
-
Thr
TGT
-
¡û
>C181196448
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
200421
200496
+
Thr
TGT
-
¡û
>C191018473
CP021081
Deinococcota
Deinococcus ficus CC-FR2-10 [CP021081]
593790
593715
-
Thr
TGT
-
¡û
>W141525696
JHAC01000048
Deinococcota
Deinococcus phoenicis [JHAC]
47822
47897
+
Thr
TGT
[ENA]
¡û
>W141561461
JHYL01000006
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
155314
155389
+
Thr
TGT
[ENA]
¡û
>W141702088
JMLF01000047
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
920
845
-
Thr
TGT
[ENA]
¡û
>W141821103
JQNI01000002
Deinococcota
Deinococcus sp. YIM 77859 [JQNI]
1020284
1020359
+
Thr
TGT
[ENA]
¡û
>C09103913
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
720410
720335
-
Thr
TGT
[Ensembl]
¡û
>W1911597496
PNOR01000040
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
791
716
-
Thr
TGT
[ENA]
¡û
>W1911788258
QYCQ01000011
Deinococcota
Deinococcus sp. RM [QYCQ]
686
614
-
Thr
TGT
[ENA]
¡û
>W1810003528
BFAG01000003
Deinococcota
Deinococcus aerius TR0125 [BFAG]
400996
401071
+
Thr
TGT
[ENA]
¡û
>W1810079117
PEKQ01002238
Alphaproteobacteria
Methylobacterium radiotolerans KUT39 [PEKQ]
879
804
-
Thr
TGT
[ENA]
¡û
>W1810238309
PPPD01000001
Deinococcota
Deinococcus koreensis SJW1-2 [PPPD]
617515
617590
+
Thr
TGT
[ENA]
¡û
>W1810423364
PYSV01000042
Deinococcota
Deinococcus arcticus OD32 [PYSV]
8018
8093
+
Thr
TGT
[ENA]
¡û
>C151081902
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
2540306
2540231
-
Thr
TGT
[Ensembl]
¡û
>C10105355
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2063911
2063836
-
Thr
TGT
[Ensembl]
¡û
>C11107223
CP002536
Deinococcota
Deinococcus proteolyticus MRP [CP002536]
1526252
1526327
+
Thr
TGT
[Ensembl]
¡û
>C11107282
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2063911
2063836
-
Thr
TGT
[Ensembl]
¡û
>C121002090
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
1251860
1251785
-
Thr
TGT
[Ensembl]
¡û
>C161061619
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
795717
795642
-
Thr
TGT
[Ensembl]
¡û
>C161082957
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
661770
661845
+
Thr
TGT
-
¡û
>W1610061579
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
2598651
2598726
+
Thr
TGT
[ENA]
¡û
>W1610638980
LIYN01000029
Deinococcota
Deinococcus sp. UR1 [LIYN]
702
627
-
Thr
TGT
[ENA]
¡û
>W1610737883
LMOM01000001
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
685868
685943
+
Thr
TGT
[ENA]
¡û
>W1710059244
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
2598651
2598726
+
Thr
TGT
[ENA]
¡û
>W1710542291
FNZA01000024
Deinococcota
Deinococcus reticulitermitis [FNZA]
25758
25833
+
Thr
TGT
[ENA]
¡û
>W1710605313
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
2072083
2072158
+
Thr
TGT
[ENA]
¡û
>W1710774874
LIYN01000029
Deinococcota
Deinococcus sp. UR1 [LIYN]
702
627
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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