This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281471 (104 seq.)
>W1710875567
LMOM01000043
Deinococcus-Thermus
Deinococcus sp. Leaf326 (LMOM)
230377
230452
+
Asp
GTC
[ENA]
¡û
>W1710875580
LMOM01000098
Deinococcus-Thermus
Deinococcus sp. Leaf326 (LMOM)
45775
45850
+
Asp
GTC
[ENA]
¡û
>W131104586
APCS01000075
Deinococcus-Thermus
Deinococcus wulumuqiensis R12 [APCS]
5808
5733
-
Asp
GTC
[ENA]
¡û
>W131104595
APCS01000108
Deinococcus-Thermus
Deinococcus wulumuqiensis R12 [APCS]
344
419
+
Asp
GTC
[ENA]
¡û
>W131176768
ARKH01000093
Deinococcus-Thermus
Deinococcus aquatilis DSM 23025 [ARKH]
31870
31795
-
Asp
GTC
[ENA]
¡û
>W131176782
ARKH01000108
Deinococcus-Thermus
Deinococcus aquatilis DSM 23025 [ARKH]
29491
29416
-
Asp
GTC
[ENA]
¡û
>W131213906
ATTJ01000001
Deinococcus-Thermus
Deinococcus sp. 2009 [ATTJ]
1092409
1092334
-
Asp
GTC
[ENA]
¡û
>W131213911
ATTJ01000001
Deinococcus-Thermus
Deinococcus sp. 2009 [ATTJ]
664942
664867
-
Asp
GTC
[ENA]
¡û
>W131237102
AUMV01000008
Deinococcus-Thermus
Deinococcus ficus DSM 19119 [AUMV]
67052
67127
+
Asp
GTC
[ENA]
¡û
>W131237106
AUMV01000009
Deinococcus-Thermus
Deinococcus ficus DSM 19119 [AUMV]
43198
43273
+
Asp
GTC
[ENA]
¡û
>W1711708257
MSTI01000138
Deinococcus-Thermus
Deinococcus marmoris (MSTI)
39214
39289
+
Asp
GTC
[ENA]
¡û
>W1711708260
MSTI01000145
Deinococcus-Thermus
Deinococcus marmoris (MSTI)
54212
54287
+
Asp
GTC
[ENA]
¡û
>W1711743910
MUFV01000001
Deinococcus-Thermus
Deinococcus sp. LM3 (MUFV)
1345814
1345889
+
Asp
GTC
[ENA]
¡û
>W1711743932
MUFV01000001
Deinococcus-Thermus
Deinococcus sp. LM3 (MUFV)
1191894
1191819
-
Asp
GTC
[ENA]
¡û
>W1712080668
NHMK01000014
Deinococcus-Thermus
Deinococcus indicus (NHMK)
169474
169399
-
Asp
GTC
[ENA]
¡û
>W1712080684
NHMK01000031
Deinococcus-Thermus
Deinococcus indicus (NHMK)
58263
58338
+
Asp
GTC
[ENA]
¡û
>C007974
AE000513
Deinococcus-Thermus
Deinococcus radiodurans R1
249822
249747
-
Asp
GTC
[Ensembl]
¡û
>C007976
AE000513
Deinococcus-Thermus
Deinococcus radiodurans R1
22107
22032
-
Asp
GTC
[Ensembl]
¡û
>WENV180232212
OBCO01000193
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
106113
106038
-
Asp
GTC
[ENA]
¢þ
>WENV180232262
OBCO01000248
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
62611
62686
+
Asp
GTC
[ENA]
¢þ
>WENV180233182
OBCP01000177
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
106113
106038
-
Asp
GTC
[ENA]
¢þ
>WENV180233241
OBCP01000233
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
62611
62686
+
Asp
GTC
[ENA]
¢þ
>WENV180569625
OCLR01000242
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
62611
62686
+
Asp
GTC
[ENA]
¢þ
>WENV180569725
OCLR01000357
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
424
499
+
Asp
GTC
[ENA]
¢þ
>WENV180570690
OCLS01000416
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
10593
10518
-
Asp
GTC
[ENA]
¢þ
>WENV180570728
OCLS01000460
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
424
499
+
Asp
GTC
[ENA]
¢þ
>WENV180571565
OCLT01000187
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
106113
106038
-
Asp
GTC
[ENA]
¢þ
>WENV180571609
OCLT01000235
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
62611
62686
+
Asp
GTC
[ENA]
¢þ
>WENV180573798
OCLW01000183
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
106113
106038
-
Asp
GTC
[ENA]
¢þ
>WENV180573855
OCLW01000233
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
62611
62686
+
Asp
GTC
[ENA]
¢þ
>WENV180639870
OCRL01000183
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
106113
106038
-
Asp
GTC
[ENA]
¢þ
>WENV180640032
OCRL01000348
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
28968
29043
+
Asp
GTC
[ENA]
¢þ
>WENV180640791
OCRM01000185
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
106113
106038
-
Asp
GTC
[ENA]
¢þ
>WENV180640870
OCRM01000243
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
62611
62686
+
Asp
GTC
[ENA]
¢þ
>WENV181223581
OFDC01037730
[OFDC] hot springs metagenome; Water
442
367
-
Asp
GTC
[ENA]
¢þ
>WENV181227982
OFDN01095721
[OFDN] hot springs metagenome; Water
475
400
-
Asp
GTC
[ENA]
¢þ
>W141154760
AXLL01000027
Deinococcus-Thermus
Deinococcus xibeiensis R13 [AXLL]
17003
17078
+
Asp
GTC
[ENA]
¡û
>W141154787
AXLL01000149
Deinococcus-Thermus
Deinococcus xibeiensis R13 [AXLL]
308
383
+
Asp
GTC
[ENA]
¡û
>W141220818
AZYF01000392
Deinococcus-Thermus
Deinococcus pimensis DSM 21231 [AZYF]
1025
1100
+
Asp
GTC
[ENA]
¡û
>W141220826
AZYF01000515
Deinococcus-Thermus
Deinococcus pimensis DSM 21231 [AZYF]
1823
1898
+
Asp
GTC
[ENA]
¡û
>WENV183636463
OOKD01004082
[OOKD] human gut metagenome; Skin biopsy
1281
1206
-
Asp
GTC
[ENA]
¢þ
>WENV170956765
MJUP01206210
[MJUP] soil metagenome; viral particles from soil sample MGM
194
269
+
Asp
GTC
[ENA]
¢þ
>C181179567
CP029494
Deinococcus-Thermus
Deinococcus sp. 17bor-2 (CP029494)
2536298
2536223
-
Asp
GTC
-
¡û
>C181179574
CP029494
Deinococcus-Thermus
Deinococcus sp. 17bor-2 (CP029494)
1399081
1399006
-
Asp
GTC
-
¡û
>C181185077
CP029774
Deinococcus-Thermus
Deinococcus actinosclerus SJTR (CP029774)
146636
146711
+
Asp
GTC
-
¡û
>C181185094
CP029774
Deinococcus-Thermus
Deinococcus actinosclerus SJTR (CP029774)
3242797
3242872
+
Asp
GTC
-
¡û
>C181196470
CP031158
Deinococcus-Thermus
Deinococcus wulumuqiensis NEB 479 (CP031158)
2473298
2473223
-
Asp
GTC
-
¡û
>C181196472
CP031158
Deinococcus-Thermus
Deinococcus wulumuqiensis NEB 479 (CP031158)
2237444
2237369
-
Asp
GTC
-
¡û
>C191018430
CP021081
Deinococcus-Thermus
Deinococcus ficus CC-FR2-10 (CP021081)
94339
94414
+
Asp
GTC
-
¡û
>C191018435
CP021081
Deinococcus-Thermus
Deinococcus ficus CC-FR2-10 (CP021081)
483225
483300
+
Asp
GTC
-
¡û
>C191121230
CP034183
Deinococcus-Thermus
Deinococcus sp. S14-83 S14-83T (CP034183, CP034184)
1445606
1445531
-
Asp
GTC
-
¡û
>C191121240
CP034183
Deinococcus-Thermus
Deinococcus sp. S14-83 S14-83T (CP034183, CP034184)
273158
273083
-
Asp
GTC
-
¡û
>W141561474
JHYL01000012
Deinococcus-Thermus
Deinococcus radiodurans ATCC 13939 [JHYL]
794
869
+
Asp
GTC
[ENA]
¡û
>W141561480
JHYL01000015
Deinococcus-Thermus
Deinococcus radiodurans ATCC 13939 [JHYL]
62803
62878
+
Asp
GTC
[ENA]
¡û
>W141702070
JMLF01000012
Deinococcus-Thermus
Deinococcus radiodurans DSM 20539 [JMLF]
103740
103665
-
Asp
GTC
[ENA]
¡û
>W141702086
JMLF01000034
Deinococcus-Thermus
Deinococcus radiodurans DSM 20539 [JMLF]
7371
7446
+
Asp
GTC
[ENA]
¡û
>W141731116
JNIV01000022
Deinococcus-Thermus
Deinococcus marmoris DSM 12784 [JNIV]
11605
11530
-
Asp
GTC
[ENA]
¡û
>W141731151
JNIV01000162
Deinococcus-Thermus
Deinococcus marmoris DSM 12784 [JNIV]
1553
1478
-
Asp
GTC
[ENA]
¡û
>W141731185
JNIW01000037
Deinococcus-Thermus
Deinococcus frigens DSM 12807 [JNIW]
6226
6151
-
Asp
GTC
[ENA]
¡û
>W141731202
JNIW01000099
Deinococcus-Thermus
Deinococcus frigens DSM 12807 [JNIW]
3882
3807
-
Asp
GTC
[ENA]
¡û
>W09101985
AAHE01000002
Deinococcus-Thermus
Deinococcus geothermalis DSM 11300 [AAHE]
64393
64468
+
Asp
GTC
[ENA]
¡û
>W1911788254
QYCQ01000010
Deinococcus-Thermus
Deinococcus sp. RM (QYCQ)
5953
6028
+
Asp
GTC
[ENA]
¡û
>W1911788262
QYCQ01000022
Deinococcus-Thermus
Deinococcus sp. RM (QYCQ)
1142
1217
+
Asp
GTC
[ENA]
¡û
>W1911802499
QYUJ01000014
Deinococcus-Thermus
Deinococcus sp. K2S05-167 (QYUJ)
2133285
2133360
+
Asp
GTC
[ENA]
¡û
>W1911802515
QYUJ01000014
Deinococcus-Thermus
Deinococcus sp. K2S05-167 (QYUJ)
2037806
2037731
-
Asp
GTC
[ENA]
¡û
>W1810238320
PPPD01000001
Deinococcus-Thermus
Deinococcus sp. SJW1-2 (PPPD)
2093924
2093999
+
Asp
GTC
[ENA]
¡û
>W1810238326
PPPD01000001
Deinococcus-Thermus
Deinococcus sp. SJW1-2 (PPPD)
2480099
2480174
+
Asp
GTC
[ENA]
¡û
>SRA1003914
SRR002328.30364
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
103
178
+
Asp
GTC
[SRA]
>W1810423347
PYSV01000011
Deinococcus-Thermus
Deinococcus sp. OD32 (PYSV)
87324
87249
-
Asp
GTC
[ENA]
¡û
>W1810423355
PYSV01000015
Deinococcus-Thermus
Deinococcus sp. OD32 (PYSV)
64003
64078
+
Asp
GTC
[ENA]
¡û
>C151063636
CP010028
Deinococcus-Thermus
Deinococcus swuensis DY59
2424790
2424865
+
Asp
GTC
[Ensembl]
¡û
>C151063656
CP010028
Deinococcus-Thermus
Deinococcus swuensis DY59
2197643
2197568
-
Asp
GTC
[Ensembl]
¡û
>C151081888
CP011389
Deinococcus-Thermus
'Deinococcus soli' Cha et al. 2014 N5
1741961
1742036
+
Asp
GTC
[Ensembl]
¡û
>C151081893
CP011389
Deinococcus-Thermus
'Deinococcus soli' Cha et al. 2014 N5
1959677
1959752
+
Asp
GTC
[Ensembl]
¡û
>C10105376
AE000513
Deinococcus-Thermus
Deinococcus radiodurans R1
249822
249747
-
Asp
GTC
[Ensembl]
¡û
>C10105378
AE000513
Deinococcus-Thermus
Deinococcus radiodurans R1
22107
22032
-
Asp
GTC
[Ensembl]
¡û
>C11107121
CP002454
Deinococcus-Thermus
Deinococcus maricopensis DSM 21211
1124010
1124085
+
Asp
GTC
[Ensembl]
¡û
>C11107125
CP002454
Deinococcus-Thermus
Deinococcus maricopensis DSM 21211
1340455
1340530
+
Asp
GTC
[Ensembl]
¡û
>C11107220
CP002536
Deinococcus-Thermus
Deinococcus proteolyticus MRP
612720
612795
+
Asp
GTC
[Ensembl]
¡û
>C11107237
CP002536
Deinococcus-Thermus
Deinococcus proteolyticus MRP
1887551
1887476
-
Asp
GTC
[Ensembl]
¡û
>C11107303
AE000513
Deinococcus-Thermus
Deinococcus radiodurans R1
249822
249747
-
Asp
GTC
[Ensembl]
¡û
>C11107305
AE000513
Deinococcus-Thermus
Deinococcus radiodurans R1
22107
22032
-
Asp
GTC
[Ensembl]
¡û
>C121002071
CP002191
Deinococcus-Thermus
Deinococcus gobiensis I-0
2848582
2848657
+
Asp
GTC
[Ensembl]
¡û
>C121002074
CP002191
Deinococcus-Thermus
Deinococcus gobiensis I-0
3023986
3023911
-
Asp
GTC
[Ensembl]
¡û
>C161034746
CP011387
Deinococcus-Thermus
Deinococcus puniceus DY1
2603411
2603486
+
Asp
GTC
[Ensembl]
¡û
>C161034774
CP011387
Deinococcus-Thermus
Deinococcus puniceus DY1
240097
240022
-
Asp
GTC
[Ensembl]
¡û
>C161061582
CP013910
Deinococcus-Thermus
Deinococcus actinosclerus BM2
149016
149091
+
Asp
GTC
[Ensembl]
¡û
>C161061599
CP013910
Deinococcus-Thermus
Deinococcus actinosclerus BM2
3187640
3187715
+
Asp
GTC
[Ensembl]
¡û
>C161082951
CP015081
Deinococcus-Thermus
Deinococcus radiodurans R1 isolate Irradiated ground pork and beef
55681
55756
+
Asp
GTC
-
¡û
>C161082978
CP015081
Deinococcus-Thermus
Deinococcus radiodurans R1 isolate Irradiated ground pork and beef
2474713
2474788
+
Asp
GTC
-
¡û
>W1610061588
BCMS01000001
Deinococcus-Thermus
Deinococcus grandis (BCMS)
3176346
3176271
-
Asp
GTC
[ENA]
¡û
>W1610061610
BCMS01000001
Deinococcus-Thermus
Deinococcus grandis (BCMS)
146483
146408
-
Asp
GTC
[ENA]
¡û
>C131003576
CP003382
Deinococcus-Thermus
Deinococcus peraridilitoris DSM 19664
2991265
2991340
+
Asp
GTC
[Ensembl]
¡û
>C131003579
CP003382
Deinococcus-Thermus
Deinococcus peraridilitoris DSM 19664
3099311
3099386
+
Asp
GTC
[Ensembl]
¡û
>W1610638989
LIYN01000243
Deinococcus-Thermus
Deinococcus sp. UR1 (LIYN)
9572
9497
-
Asp
GTC
[ENA]
¡û
>W1610638991
LIYN01000276
Deinococcus-Thermus
Deinococcus sp. UR1 (LIYN)
198
273
+
Asp
GTC
[ENA]
¡û
>W1610737913
LMOM01000043
Deinococcus-Thermus
Deinococcus sp. Leaf326 (LMOM)
230377
230452
+
Asp
GTC
[ENA]
¡û
>W1610737926
LMOM01000098
Deinococcus-Thermus
Deinococcus sp. Leaf326 (LMOM)
45775
45850
+
Asp
GTC
[ENA]
¡û
>W1710059253
BCMS01000001
Deinococcus-Thermus
Deinococcus grandis (BCMS)
3176346
3176271
-
Asp
GTC
[ENA]
¡û
>W1710059275
BCMS01000001
Deinococcus-Thermus
Deinococcus grandis (BCMS)
146483
146408
-
Asp
GTC
[ENA]
¡û
>W1710542281
FNZA01000017
Deinococcus-Thermus
Deinococcus reticulitermitis (FNZA)
4607
4682
+
Asp
GTC
[ENA]
¡û
>W1710542299
FNZA01000039
Deinococcus-Thermus
Deinococcus reticulitermitis (FNZA)
3745
3670
-
Asp
GTC
[ENA]
¡û
>W1710774883
LIYN01000243
Deinococcus-Thermus
Deinococcus sp. UR1 (LIYN)
9572
9497
-
Asp
GTC
[ENA]
¡û
>W1710774885
LIYN01000276
Deinococcus-Thermus
Deinococcus sp. UR1 (LIYN)
198
273
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK