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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281484 (42 seq.)
>W1710919761
LNXX01000049
Gammaproteobacteria
Legionella cincinnatiensis [LNXX]
13328
13404
+
Pro
TGG
[ENA]
¡û
>W1710920028
LNYE01000020
Gammaproteobacteria
Legionella gratiana [LNYE]
288581
288505
-
Pro
TGG
[ENA]
¡û
>W1710920192
LNYI01000038
Gammaproteobacteria
Legionella lansingensis [LNYI]
9209
9285
+
Pro
TGG
[ENA]
¡û
>W1710920247
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
801399
801323
-
Pro
TGG
[ENA]
¡û
>W1710920660
LNYU01000012
Gammaproteobacteria
Legionella santicrucis [LNYU]
69417
69493
+
Pro
TGG
[ENA]
¡û
>W1710920725
LNYV01000034
Gammaproteobacteria
Legionella sainthelensi [LNYV]
390297
390373
+
Pro
TGG
[ENA]
¡û
>W1710920827
LNYY01000019
Gammaproteobacteria
Legionella steelei [LNYY]
284888
284964
+
Pro
TGG
[ENA]
¡û
>W1711302728
MAJD01000001
Gammaproteobacteria
Halomonas elongata [MAJD]
943694
943618
-
Pro
TGG
[ENA]
¡û
>W1711503396
MKTO01000025
Gammaproteobacteria
Legionella sp. 39-23 [MKTO]
63632
63556
-
Pro
TGG
[ENA]
¡û
>C171106604
CP020412
Gammaproteobacteria
Legionella longbeachae FDAARGOS_201 [CP020412]
1059970
1059894
-
Pro
TGG
-
¡û
>C171114444
CP020894
Gammaproteobacteria
Legionella longbeachae F1157CHC [CP020894]
4138915
4138991
+
Pro
TGG
-
¡û
>WENV180247379
OBEQ010021855
[OBEQ] groundwater metagenome; groundwater
376
452
+
Pro
TGG
[ENA]
¢þ
>WENV183703569
PDVJ01023929
[PDVJ] alkali sediment metagenome; glacial lake sediment
100
176
+
Pro
TGG
[ENA]
¢þ
>WENV170014808
AZIB01001745
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
154
230
+
Pro
TGG
[ENA]
¢þ
>C181117882
CP025491
Gammaproteobacteria
Legionella sainthelensi LA01-117 [CP025491]
2467653
2467729
+
Pro
TGG
-
¡û
>C181225048
LT906451
Gammaproteobacteria
Legionella lansingensis NCTC12830 [LT906451]
625787
625863
+
Pro
TGG
-
¡û
>C191198952
LR134178
Gammaproteobacteria
Legionella sainthelensi NCTC12450 [LR134178]
1429762
1429838
+
Pro
TGG
-
¡û
>C191204090
LR134286
Gammaproteobacteria
Legionella oakridgensis NCTC11531 [LR134286]
1522231
1522307
+
Pro
TGG
-
¡û
>C191209817
LR134383
Gammaproteobacteria
Legionella jordanis NCTC11533 [LR134383]
649527
649603
+
Pro
TGG
-
¡û
>C191210115
LR134388
Gammaproteobacteria
Legionella sainthelensi NCTC11988 [LR134388]
2696057
2695981
-
Pro
TGG
-
¡û
>W141558798
JHWF01000022
Gammaproteobacteria
Legionella lansingensis DSM 19556 = ATCC 49751 [JHWF]
44641
44565
-
Pro
TGG
[ENA]
¡û
>W141560440
JHXP01000007
Gammaproteobacteria
Legionella sainthelensi ATCC 35248 [JHXP]
7235
7159
-
Pro
TGG
[ENA]
¡û
>W1910183867
BJOC01000024
Gammaproteobacteria
Halomonas halmophila NBRC 15537 [BJOC]
9747
9671
-
Pro
TGG
[ENA]
¡û
>W1910377331
FUKI01000002
Gammaproteobacteria
Crenothrix polyspora [FUKI]
15445
15521
+
Pro
TGG
[ENA]
¡û
>W1910377378
FUKJ01000253
Gammaproteobacteria
Crenothrix polyspora [FUKJ]
2816
2740
-
Pro
TGG
[ENA]
¡û
>W1910729959
MHBC01000011
Gammaproteobacteria
Legionellales bacterium RIFCSPHIGHO2_12_FULL_37_14 [MHBC]
7450
7526
+
Pro
TGG
[ENA]
¡û
>SRA1013807
SRR023631.56685
High saltern (Pond 5) microbes attempt 1 (SRP001107)
85
9
-
Pro
TGG
[SRA]
>SRA1013819
SRR023631.89134
High saltern (Pond 5) microbes attempt 1 (SRP001107)
85
9
-
Pro
TGG
[SRA]
>W10107345
ACZG01000001
Gammaproteobacteria
Legionella longbeachae D-4968 [ACZG]
403890
403814
-
Pro
TGG
[ENA]
¡û
>C10108650
FN650140
Gammaproteobacteria
Legionella longbeachae NSW150 [FN650140]
1525382
1525458
+
Pro
TGG
[Ensembl]
¡û
>C11110090
FN869568
Gammaproteobacteria
Halomonas elongata DSM 2581 type strain: DSM 2581 [FN869568]
1532719
1532795
+
Pro
TGG
[Ensembl]
¡û
>W11109634
ACZG01000001
Gammaproteobacteria
Legionella longbeachae D-4968 [ACZG]
403890
403814
-
Pro
TGG
[ENA]
¡û
>W1610580132
LBAX01000007
Gammaproteobacteria
Legionella jordanis [LBAX]
88665
88589
-
Pro
TGG
[ENA]
¡û
>W1610777659
LNXX01000049
Gammaproteobacteria
Legionella cincinnatiensis [LNXX]
13328
13404
+
Pro
TGG
[ENA]
¡û
>W1610777926
LNYE01000020
Gammaproteobacteria
Legionella gratiana [LNYE]
288581
288505
-
Pro
TGG
[ENA]
¡û
>W1610778090
LNYI01000038
Gammaproteobacteria
Legionella lansingensis [LNYI]
9209
9285
+
Pro
TGG
[ENA]
¡û
>W1610778145
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
801399
801323
-
Pro
TGG
[ENA]
¡û
>W1610778558
LNYU01000012
Gammaproteobacteria
Legionella santicrucis [LNYU]
69417
69493
+
Pro
TGG
[ENA]
¡û
>W1610778623
LNYV01000034
Gammaproteobacteria
Legionella sainthelensi [LNYV]
390297
390373
+
Pro
TGG
[ENA]
¡û
>W1610778725
LNYY01000019
Gammaproteobacteria
Legionella steelei [LNYY]
284888
284964
+
Pro
TGG
[ENA]
¡û
>W1611053053
MAJD01000001
Gammaproteobacteria
Halomonas elongata [MAJD]
943694
943618
-
Pro
TGG
[ENA]
¡û
>W1710699144
LBAX01000007
Gammaproteobacteria
Legionella jordanis [LBAX]
88665
88589
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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