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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281593 (64 seq.)
>W1710797491
LJTA01000073
Bacillota
Clostridium sporogenes [LJTA]
19095
19020
-
Met
CAT
[ENA]
¡û
>W1710857094
LLZV01000037
Bacillota
Clostridium sporogenes [LLZV]
125819
125894
+
Met
CAT
[ENA]
¡û
>W131003179
AHAF01000011
Bacillota
Veillonella seminalis ACS-216-V-Col6b [AHAF]
69964
70039
+
Met
CAT
[ENA]
¡û
>W1711664694
MRAD01000009
Bacillota
Clostridium tepidum DSM 18688 [MRAD]
115304
115379
+
Met
CAT
[ENA]
¡û
>W1711664766
MRAE01000004
Bacillota
Clostridium tepidum IEH 97212 [MRAE]
115304
115379
+
Met
CAT
[ENA]
¡û
>C171045968
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
148431
148506
+
Met
CAT
-
¡û
>WENV180153071
OAUR01000462
[OAUR] human gut metagenome; faeces
7121
7196
+
fMet
CAT
[ENA]
¢þ
>WENV180432253
OBWI01000693
[OBWI] human gut metagenome; faeces
17149
17224
+
fMet
CAT
[ENA]
¢þ
>WENV180462806
OBYB01070912
[OBYB] human gut metagenome; faeces
210
135
-
fMet
CAT
[ENA]
¢þ
>WENV180465154
OBYE01006171
[OBYE] human gut metagenome; faeces
61
136
+
fMet
CAT
[ENA]
¢þ
>WENV180472915
OBYQ01005694
[OBYQ] human gut metagenome; faeces
2091
2166
+
fMet
CAT
[ENA]
¢þ
>WENV180897186
ODNI01008967
[ODNI] human metagenome; G_DNA_Tongue dorsum
105
180
+
fMet
CAT
[ENA]
¢þ
>WENV181074214
OEAO01004583
[OEAO] human metagenome; G_DNA_Tongue dorsum
264
190
-
fMet
CAT
[ENA]
¢þ
>WENV181630069
OGMP01029565
[OGMP] metagenome; Human gut stool
732
657
-
fMet
CAT
[ENA]
¢þ
>WENV181732521
OGQD01047122
[OGQD] human gut metagenome; faeces
721
646
-
fMet
CAT
[ENA]
¢þ
>WENV181988122
OHAN01003554
[OHAN] human gut metagenome; faeces
738
663
-
fMet
CAT
[ENA]
¢þ
>C08002468
CP000726
Bacillota
Clostridium botulinum A str. ATCC 19397 [CP000726]
3750639
3750567
-
Met
CAT
[Ensembl]
¡û
>C08002705
CP000727
Bacillota
Clostridium botulinum A str. Hall [CP000727]
3647749
3647677
-
Met
CAT
[Ensembl]
¡û
>WENV182419422
OIGK01000025
[OIGK] human gut metagenome; human gut
109523
109598
+
fMet
CAT
[ENA]
¢þ
>W141288746
JAPX01000043
Bacillota
Veillonella sp. ICM51a [JAPX]
28205
28280
+
Met
CAT
[ENA]
¡û
>WENV183171862
OLPC01001530
[OLPC] human gut metagenome; faeces
1299
1224
-
fMet
CAT
[ENA]
¢þ
>WENV183319855
OLVV01027802
[OLVV] human gut metagenome; feces
74
-1
-
fMet
CAT
[ENA]
¢þ
>WENV183519055
OMNT01000089
[OMNT] human gut metagenome; faeces
7275
7201
-
fMet
CAT
[ENA]
¢þ
>WENV183772580
PPYF01017549
[PPYF] human gut metagenome; stool from patient with Crohn's disease
762
687
-
fMet
CAT
[ENA]
¢þ
>WENV183774069
PPYF01029303
[PPYF] human gut metagenome; stool from patient with Crohn's disease
773
698
-
fMet
CAT
[ENA]
¢þ
>WENV183779225
PPYF01130792
[PPYF] human gut metagenome; stool from patient with Crohn's disease
772
697
-
fMet
CAT
[ENA]
¢þ
>WENV183789113
PPYF01380725
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1149
1074
-
fMet
CAT
[ENA]
¢þ
>WENV183791258
PPYF01430466
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1672
1747
+
fMet
CAT
[ENA]
¢þ
>WENV170021106
BBPF01002577
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
8
83
+
Met
CAT
[ENA]
¢þ
>W141451961
JFBQ01000003
Bacillota
Clostridium sporogenes [JFBQ]
81239
81314
+
Met
CAT
[ENA]
¡û
>W141460532
JFGA01000514
Bacillota
Clostridium botulinum [JFGA]
953
1028
+
Met
CAT
[ENA]
¡û
>WENV170926868
MDTG01107280
[MDTG] marine metagenome; seawater
3336
3261
-
Met
CAT
[ENA]
¢þ
>C181168879
CP028842
Bacillota
Clostridium botulinum DFPST0029 [CP028842]
3745700
3745625
-
Met
CAT
-
¡û
>C181168961
CP028859
Bacillota
Clostridium botulinum CFSAN064329 [CP028859]
3807506
3807431
-
Met
CAT
-
¡û
>C191222107
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
2495108
2495033
-
Met
CAT
-
¡û
>W1910503392
FYCJ01000019
Bacillota
Selenomonas felix Marseille-P3560 [FYCJ]
586274
586199
-
Met
CAT
[ENA]
¡û
>W1511565929
LAGG01000143
Bacillota
Clostridium sporogenes CDC24442 [LAGG]
209
134
-
Met
CAT
[ENA]
¡û
>W1511699404
LGIL01000034
Bacillota
Clostridium botulinum ATCC 7949 [LGIL]
18377
18302
-
Met
CAT
[ENA]
¡û
>C161056094
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
952124
952049
-
Met
CAT
[Ensembl]
¡û
>C161056104
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
574695
574620
-
Met
CAT
[Ensembl]
¡û
>C161056111
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
574071
573996
-
Met
CAT
[Ensembl]
¡û
>C161056122
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
486359
486284
-
Met
CAT
[Ensembl]
¡û
>C161056147
CP013476
Bacillota
Turicibacter sp. H121 [CP013476]
482872
482797
-
Met
CAT
[Ensembl]
¡û
>W1610099823
CYYS01000073
Bacillota
Turicibacter sanguinis [CYYS]
2440
2365
-
Met
CAT
[ENA]
¡û
>W1610099830
CYYS01000073
Bacillota
Turicibacter sanguinis [CYYS]
1815
1740
-
Met
CAT
[ENA]
¡û
>W1610099843
CYYS01000077
Bacillota
Turicibacter sanguinis [CYYS]
735
810
+
Met
CAT
[ENA]
¡û
>W1610601859
LFOV01000028
Bacillota
Clostridium botulinum [LFOV]
18338
18263
-
Met
CAT
[ENA]
¡û
>W1610601896
LFOW01000007
Bacillota
Clostridium botulinum [LFOW]
78846
78921
+
Met
CAT
[ENA]
¡û
>W1610602685
LFPK01000013
Bacillota
Clostridium sporogenes botulinum [LFPK]
18140
18065
-
Met
CAT
[ENA]
¡û
>W1610602974
LFPP01000010
Bacillota
Clostridium botulinum [LFPP]
18494
18419
-
Met
CAT
[ENA]
¡û
>W1610661448
LJTA01000073
Bacillota
Clostridium sporogenes [LJTA]
19095
19020
-
Met
CAT
[ENA]
¡û
>W1610719475
LLZV01000037
Bacillota
Clostridium sporogenes [LLZV]
125819
125894
+
Met
CAT
[ENA]
¡û
>W1710102578
CYYS01000073
Bacillota
Turicibacter sanguinis [CYYS]
2440
2365
-
Met
CAT
[ENA]
¡û
>W1710102585
CYYS01000073
Bacillota
Turicibacter sanguinis [CYYS]
1815
1740
-
Met
CAT
[ENA]
¡û
>W1710102598
CYYS01000077
Bacillota
Turicibacter sanguinis [CYYS]
735
810
+
Met
CAT
[ENA]
¡û
>W1710513517
FNAF01000002
Bacillota
Peptococcus niger [FNAF]
80295
80367
+
Met
CAT
[ENA]
¡û
>W1710547038
FOCQ01000005
Bacillota
Lihuaxuella thermophila [FOCQ]
180506
180581
+
Met
CAT
[ENA]
¡û
>W1710547081
FOCQ01000016
Bacillota
Lihuaxuella thermophila [FOCQ]
38603
38528
-
Met
CAT
[ENA]
¡û
>W1710723227
LFOT01000013
Bacillota
Clostridium botulinum [LFOT]
84341
84416
+
Met
CAT
[ENA]
¡û
>W1710723375
LFOV01000028
Bacillota
Clostridium botulinum [LFOV]
18338
18263
-
Met
CAT
[ENA]
¡û
>W1710723412
LFOW01000007
Bacillota
Clostridium botulinum [LFOW]
78846
78921
+
Met
CAT
[ENA]
¡û
>W1710724201
LFPK01000013
Bacillota
Clostridium sporogenes botulinum [LFPK]
18140
18065
-
Met
CAT
[ENA]
¡û
>W1710724490
LFPP01000010
Bacillota
Clostridium botulinum [LFPP]
18494
18419
-
Met
CAT
[ENA]
¡û
>W1710754669
LHUL01000017
Bacillota
Clostridium botulinum [LHUL]
122094
122169
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK