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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281626 (28 seq.)
>W1711091071
LTBC01000001
Bacillota
Moorella mulderi DSM 14980 [LTBC]
243449
243524
+
Lys
TTT
[ENA]
¡û
>W1711352265
MDDB01000003
Bacillota
Moorella thermoacetica [MDDB]
79751
79826
+
Lys
TTT
[ENA]
¡û
>W1711352320
MDDC01000006
Bacillota
Moorella thermoacetica [MDDC]
132702
132777
+
Lys
TTT
[ENA]
¡û
>W1711352391
MDDD01000013
Bacillota
Moorella thermoacetica [MDDD]
30059
29984
-
Lys
TTT
[ENA]
¡û
>W1711352449
MDDE01000014
Bacillota
Moorella thermoacetica [MDDE]
60487
60562
+
Lys
TTT
[ENA]
¡û
>W1711428513
MIHH01000001
Bacillota
Moorella thermoacetica [MIHH]
33926
34001
+
Lys
TTT
[ENA]
¡û
>W1711428578
MIIF01000004
Bacillota
Moorella thermoacetica [MIIF]
140740
140665
-
Lys
TTT
[ENA]
¡û
>C171055197
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
2771780
2771855
+
Lys
TTT
-
¡û
>C171058963
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
2358735
2358810
+
Lys
TTT
-
¡û
>C014182
CP000232
Bacillota
Moorella thermoacetica [CP000232]
2419549
2419624
+
Lys
TTT
[Ensembl]
¡û
>C018191
AP009389
Bacillota
Pelotomaculum thermopropionicum SI [AP009389]
2985903
2985828
-
Lys
TTT
[Ensembl]
¡û
>W141229786
BARR01000020
Bacillota
Moorella thermoacetica Y72 [BARR]
259
334
+
Lys
TTT
[ENA]
¡û
>WENV170003899
AGTN01495352
[AGTN] bioreactor metagenome; poplar biomass
163
238
+
Lys
TTT
[ENA]
¢þ
>WENV170689735
LFRM01308850
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
83485
83560
+
Lys
TTT
[ENA]
¢þ
>C191073439
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
2435977
2436052
+
Lys
TTT
-
¡û
>W09100913
AADT03000001
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
143412
143487
+
Lys
TTT
[ENA]
¡û
>W1910180041
BJKN01000001
Bacillota
Moorella sp. E308F [BJKN]
500493
500568
+
Lys
TTT
[ENA]
¡û
>W1910180122
BJKO01000001
Bacillota
Moorella sp. E306M [BJKO]
1447399
1447324
-
Lys
TTT
[ENA]
¡û
>W1810367306
PVXL01000067
Bacillota
Moorella stamsii DSM 26271 [PVXL]
1598
1673
+
Lys
TTT
[ENA]
¡û
>W1810367343
PVXM01000028
Bacillota
Moorella humiferrea DSM 23265 [PVXM]
26260
26185
-
Lys
TTT
[ENA]
¡û
>C151094367
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
2317980
2318055
+
Lys
TTT
-
¡û
>C151094418
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
2413765
2413840
+
Lys
TTT
-
¡û
>W1510100283
CELZ01000057
Bacillota
Moorella glycerini NMP [CELZ]
115745
115670
-
Lys
TTT
[ENA]
¡û
>W1610605316
LFRU01000082
Bacillota
Syntrophothermus sp. DTU052 [LFRU]
83485
83560
+
Lys
TTT
[ENA]
¡û
>W1610606276
LFSS01000082
Bacillota
Syntrophothermus sp. DTU052 [LFSS]
83485
83560
+
Lys
TTT
[ENA]
¡û
>W1610925270
LTBC01000001
Bacillota
Moorella mulderi DSM 14980 [LTBC]
243449
243524
+
Lys
TTT
[ENA]
¡û
>W1710726636
LFRU01000082
Bacillota
Syntrophothermus sp. DTU052 [LFRU]
83485
83560
+
Lys
TTT
[ENA]
¡û
>W1710727563
LFSS01000082
Bacillota
Syntrophothermus sp. DTU052 [LFSS]
83485
83560
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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