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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281636 (52 seq.)
>W1710776312
LIZN01000002
Actinomycetota
Thermobifida halotolerans [LIZN]
54266
54339
+
Glu
TTC
[ENA]
¡û
>W1711282554
LZNS01000001
Actinomycetota
Streptomyces sp. MP131-18 [LZNS]
4443448
4443373
-
Glu
TTC
[ENA]
¡û
>W131098850
AOSG01000086
Actinomycetota
Thermobifida fusca TM51 [AOSG]
27641
27568
-
Glu
TTC
[ENA]
¡û
>W1711492066
MKKC01000063
Actinomycetota
Nocardiopsis sp. CNR-923 [MKKC]
28473
28548
+
Glu
TTC
[ENA]
¡û
>C171070739
CP017965
Actinomycetota
Nocardiopsis dassonvillei NOCA502F [CP017965]
6096780
6096705
-
Glu
TTC
-
¡û
>W131163094
AQZN01000002
Actinomycetota
Actinopolyspora mortivallis DSM 44261 [AQZN]
29737
29812
+
Glu
TTC
[ENA]
¡û
>W131054579
ANAW01000049
Actinomycetota
Nocardiopsis synnemataformans DSM 44143 [ANAW]
21433
21358
-
Glu
TTC
[ENA]
¡û
>C025609
CP000088
Actinomycetota
Thermobifida fusca YX [CP000088]
3356204
3356132
-
Glu
TTC
[Ensembl]
¡û
>w001893
AAAQ02000003
Actinomycetota
Thermobifida fusca [AAAQ]
176556
176481
-
Glu
TTC
[ENA]
¡û
>W141094390
AVCN01000027
Actinomycetota
Saccharopolyspora erythraea D [AVCN]
55794
55867
+
Glu
TTC
[ENA]
¡û
>WENV181597391
OGKZ01001998
[OGKZ] metagenome; Human gut stool
1235
1308
+
Glu
TTC
[ENA]
¢þ
>WENV170023752
BCQL01002442
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
3877
3950
+
Glu
TTC
[ENA]
¢þ
>WENV170023788
BCQL01003622
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1613
1538
-
Glu
TTC
[ENA]
¢þ
>C181072158
CP022752
Actinomycetota
Actinopolyspora erythraea YIM 90600 [CP022752]
4810238
4810165
-
Glu
TTC
-
¡û
>C191151541
CP036455
Actinomycetota
Streptomonospora litoralis M2 [CP036455]
5355973
5355900
-
Glu
TTC
-
¡û
>W09108511
ABTI01000033
Actinomycetota
Catenulispora acidiphila DSM 44928 [ABTI]
5373
5300
-
Glu
TTC
[ENA]
¡û
>W141770743
JOGR01000014
Actinomycetota
Glycomyces sp. NRRL B-16210 [JOGR]
57660
57735
+
Glu
TTC
[ENA]
¡û
>W1910568591
JEMR01000008
Actinomycetota
Thermobifida fusca GAFM-TF-ZOO [JEMR]
82990
83063
+
Glu
TTC
[ENA]
¡û
>W1910575982
JRUV01000275
Actinomycetota
Thermobifida halotolerans DSM 44931 [JRUV]
5589
5516
-
Glu
TTC
[ENA]
¡û
>W1911539597
ONLN01000188
Actinomycetota
Thermobifida fusca [ONLN]
9245
9318
+
Glu
TTC
[ENA]
¡û
>W1810091088
PGGV01000016
Actinomycetota
Glycomyces xiaoerkulensis TRM 41368 [PGGV]
333305
333232
-
Glu
TTC
[ENA]
¡û
>W1810363913
PVSR01000082
Actinomycetota
Actinopolyspora mortivallis M5A [PVSR]
389
462
+
Glu
TTC
[ENA]
¡û
>W1810504359
QBKV01000002
Actinomycetota
Saccharopolyspora hirsuta DSM 44795 [QBKV]
7376477
7376404
-
Glu
TTC
[ENA]
¡û
>W1810570489
QEIM01000187
Actinomycetota
Marinitenerispora sediminis TPS83 [QEIM]
10077
10004
-
Glu
TTC
[ENA]
¡û
>W1810570524
QEIN01000108
Actinomycetota
Marinitenerispora sediminis TPS81 [QEIN]
17037
16964
-
Glu
TTC
[ENA]
¡û
>W1810570589
QEIO01000105
Actinomycetota
Marinitenerispora sediminis TPS16 [QEIO]
12330
12257
-
Glu
TTC
[ENA]
¡û
>W1810588378
QFRW01000281
Actinomycetota
Glycomyces dulcitolivorans SJ-25 [QFRW]
5175
5248
+
Glu
TTC
[ENA]
¡û
>W1810758986
QPJC01000001
Actinomycetota
Halopolyspora algeriensis CECT 8575 [QPJC]
310275
310202
-
Glu
TTC
[ENA]
¡û
>W10100220
ABFV01000026
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [ABFV]
55361
55434
+
Glu
TTC
[ENA]
¡û
>C10102566
CP001700
Actinomycetota
Catenulispora acidiphila DSM 44928 [CP001700]
10092707
10092780
+
Glu
TTC
[Ensembl]
¡û
>W11100220
ABFV01000026
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [ABFV]
55361
55434
+
Glu
TTC
[ENA]
¡û
>W1511307026
JPMV01000010
Actinomycetota
Actinopolyspora erythraea YIM 90600 [JPMV]
55678
55751
+
Glu
TTC
[ENA]
¡û
>W1511352742
JROO01000009
Actinomycetota
Streptomonospora alba YIM 90003 [JROO]
127158
127231
+
Glu
TTC
[ENA]
¡û
>W1610051333
BBGT01000200
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BBGT]
1567
1640
+
Glu
TTC
[ENA]
¡û
>W1610052738
BBIE01000060
Actinomycetota
Kineosporia succinea JCM 9957 [BBIE]
1601
1674
+
Glu
TTC
[ENA]
¡û
>W1610073728
BCWB01000038
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BCWB]
72055
72128
+
Glu
TTC
[ENA]
¡û
>W1610612184
LGEM01000103
Actinomycetota
Thermobifida cellulosilytica TB100 [LGEM]
40581
40656
+
Glu
TTC
[ENA]
¡û
>W1610640418
LIZN01000002
Actinomycetota
Thermobifida halotolerans [LIZN]
54266
54339
+
Glu
TTC
[ENA]
¡û
>W1710047732
BBGT01000200
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BBGT]
1567
1640
+
Glu
TTC
[ENA]
¡û
>W1710049116
BBIE01000060
Actinomycetota
Kineosporia succinea JCM 9957 [BBIE]
1601
1674
+
Glu
TTC
[ENA]
¡û
>W1710070846
BCWB01000038
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BCWB]
72055
72128
+
Glu
TTC
[ENA]
¡û
>W1710513415
FNAD01000005
Actinomycetota
Glycomyces harbinensis [FNAD]
58955
59028
+
Glu
TTC
[ENA]
¡û
>W1710520269
FNFM01000002
Actinomycetota
Actinopolyspora mzabensis [FNFM]
285009
284934
-
Glu
TTC
[ENA]
¡û
>W1710525624
FNJR01000009
Actinomycetota
Actinopolyspora xinjiangensis [FNJR]
8379
8306
-
Glu
TTC
[ENA]
¡û
>W1710526777
FNKO01000002
Actinomycetota
Actinopolyspora saharensis [FNKO]
1883862
1883935
+
Glu
TTC
[ENA]
¡û
>W1710539107
FNVB01000008
Actinomycetota
Saccharopolyspora kobensis hirsuta [FNVB]
156902
156829
-
Glu
TTC
[ENA]
¡û
>W1710558818
FOME01000007
Actinomycetota
Saccharopolyspora kobensis jiangxiensis [FOME]
156907
156834
-
Glu
TTC
[ENA]
¡û
>W1710559904
FOMZ01000005
Actinomycetota
Actinopolyspora alba [FOMZ]
293868
293793
-
Glu
TTC
[ENA]
¡û
>W1710577327
FPAT01000004
Actinomycetota
Actinopolyspora righensis [FPAT]
271263
271188
-
Glu
TTC
[ENA]
¡û
>W1710589974
FRAP01000020
Actinomycetota
Pseudonocardia thermophila [FRAP]
97965
97892
-
Glu
TTC
[ENA]
¡û
>W1710600702
FUWS01000006
Actinomycetota
Marinactinospora thermotolerans DSM 45154 [FUWS]
59712
59639
-
Glu
TTC
[ENA]
¡û
>W1710733690
LGEM01000103
Actinomycetota
Thermobifida cellulosilytica TB100 [LGEM]
40581
40656
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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