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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281704 (33 seq.)
>W1711088324
LSYU01000001
Gammaproteobacteria
Marichromatium gracile [LSYU]
39749
39673
-
Met
CAT
[ENA]
¡û
>W1711088325
LSYU01000001
Gammaproteobacteria
Marichromatium gracile [LSYU]
39599
39523
-
Met
CAT
[ENA]
¡û
>W1711088326
LSYU01000001
Gammaproteobacteria
Marichromatium gracile [LSYU]
39449
39373
-
Met
CAT
[ENA]
¡û
>WENV011234
AACY020306248
Marine microbial communities from Global Ocean Sampling (GOS)
12864
12786
-
Met
CAT
[ENA]
>W141055235
AONC01000040
Gammaproteobacteria
Imhoffiella purpurea AK35 [AONC]
93803
93727
-
Met
CAT
[ENA]
¡û
>W141055236
AONC01000045
Gammaproteobacteria
Imhoffiella purpurea AK35 [AONC]
104641
104717
+
Met
CAT
[ENA]
¡û
>W141055255
AONC01000076
Gammaproteobacteria
Imhoffiella purpurea AK35 [AONC]
46578
46502
-
Met
CAT
[ENA]
¡û
>WENV181171179
OEIV010163930
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
76
1
-
fMet
CAT
[ENA]
¢þ
>WENV181415546
OGCL01014143
[OGCL] hot springs metagenome; Hot spring water
415
339
-
fMet
CAT
[ENA]
¢þ
>W09133813
ACQQ01000003
Gammaproteobacteria
Allochromatium vinosum DSM 180 [ACQQ]
268853
268929
+
Met
CAT
[ENA]
¡û
>W1810236319
PPGH01000037
Gammaproteobacteria
Chromatium okenii LaCa [PPGH]
699175
699251
+
Met
CAT
[ENA]
¡û
>C151016277
CP007031
Gammaproteobacteria
Marichromatium purpuratum 984 [CP007031]
2187980
2187904
-
Met
CAT
[Ensembl]
¡û
>C151016278
CP007031
Gammaproteobacteria
Marichromatium purpuratum 984 [CP007031]
2187830
2187754
-
Met
CAT
[Ensembl]
¡û
>C10101225
CP001896
Gammaproteobacteria
Allochromatium vinosum DSM 180 [CP001896]
2332516
2332440
-
Met
CAT
[Ensembl]
¡û
>W11176005
AFWS01000004
Gammaproteobacteria
Thiorhodovibrio frisius 970 [AFWS]
157683
157607
-
Met
CAT
[ENA]
¡û
>W11176044
AFWT01000004
Gammaproteobacteria
Thiorhodococcus drewsii AZ1 [AFWT]
38529
38605
+
Met
CAT
[ENA]
¡û
>W11176062
AFWT01000011
Gammaproteobacteria
Thiorhodococcus drewsii AZ1 [AFWT]
93388
93464
+
Met
CAT
[ENA]
¡û
>W11176081
AFWT01000051
Gammaproteobacteria
Thiorhodococcus drewsii AZ1 [AFWT]
31221
31297
+
Met
CAT
[ENA]
¡û
>W11176133
AFWU01000021
Gammaproteobacteria
Marichromatium purpuratum 984 [AFWU]
27156
27080
-
Met
CAT
[ENA]
¡û
>W11176134
AFWU01000021
Gammaproteobacteria
Marichromatium purpuratum 984 [AFWU]
27006
26930
-
Met
CAT
[ENA]
¡û
>W11176168
AFWV01000011
Gammaproteobacteria
Thiocapsa marina 5811 [AFWV]
170528
170452
-
Met
CAT
[ENA]
¡û
>W11178617
AGFC01000023
Gammaproteobacteria
Thiocystis violascens DSM 198 [AGFC]
21000
20924
-
Met
CAT
[ENA]
¡û
>C121007005
CP003154
Gammaproteobacteria
Thiocystis violascens DSM 198 [CP003154]
4989847
4989923
+
Met
CAT
[Ensembl]
¡û
>W1610085800
CVPF01000227
Gammaproteobacteria
Thiocapsa sp. KS1 [CVPF]
38486
38562
+
Met
CAT
[ENA]
¡û
>C131001772
CP003051
Gammaproteobacteria
Thioflavicoccus mobilis 8321 [CP003051]
2907193
2907117
-
Met
CAT
[Ensembl]
¡û
>W1610516266
JABX01000011
Gammaproteobacteria
Thiohalocapsa sp. ML1 [JABX]
137764
137840
+
Met
CAT
[ENA]
¡û
>W1610922863
LSYU01000001
Gammaproteobacteria
Marichromatium gracile [LSYU]
39749
39673
-
Met
CAT
[ENA]
¡û
>W1610922864
LSYU01000001
Gammaproteobacteria
Marichromatium gracile [LSYU]
39599
39523
-
Met
CAT
[ENA]
¡û
>W1610922865
LSYU01000001
Gammaproteobacteria
Marichromatium gracile [LSYU]
39449
39373
-
Met
CAT
[ENA]
¡û
>W1710090389
CVPF01000227
Gammaproteobacteria
Thiocapsa sp. KS1 [CVPF]
38486
38562
+
Met
CAT
[ENA]
¡û
>W1710529457
FNNZ01000003
Gammaproteobacteria
Thiocapsa roseopersicina [FNNZ]
227567
227643
+
Met
CAT
[ENA]
¡û
>W1710530584
FNOW01000005
Gammaproteobacteria
Allochromatium warmingii [FNOW]
2614
2690
+
Met
CAT
[ENA]
¡û
>W1710611608
JABX01000011
Gammaproteobacteria
Thiohalocapsa sp. ML1 [JABX]
137764
137840
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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