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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281705 (38 seq.)
>W1711088364
LSYU01000094
Gammaproteobacteria
Marichromatium gracile [LSYU]
2961
2885
-
Ile
GAT
[ENA]
¡û
>C171101062
CP019936
Gammaproteobacteria
Chromatiaceae bacterium 2141T.STBD.0c.01a [CP019936]
604655
604731
+
Ile
GAT
-
¡û
>W131164860
ARBC01000182
Gammaproteobacteria
Lamprocystis purpurea DSM 4197 [ARBC]
411
335
-
Ile
GAT
[ENA]
¡û
>WENV180043332
LQAH01030195
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
416
492
+
Ile
GAT
[ENA]
¢þ
>WENV180346049
OBLN01022549
[OBLN] sediment metagenome; sediment
6
82
+
Ile
GAT
[ENA]
¢þ
>W141055242
AONC01000053
Gammaproteobacteria
Imhoffiella purpurea AK35 [AONC]
1824
1900
+
Ile
GAT
[ENA]
¡û
>WENV181170026
OEIV010020166
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1654
1578
-
Ile
GAT
[ENA]
¢þ
>WENV170014058
AVFP01004244
[AVFP] microbial mat metagenome; pink berry consortia of the Sippewissett salt marsh
1800
1876
+
Ile
GAT
[ENA]
¢þ
>WENV170623763
FUWD013170612
[FUWD] metagenome; unknown
535
611
+
Ile
GAT
[ENA]
¢þ
>WENV170632038
FUWD013377684
[FUWD] metagenome; unknown
535
611
+
Ile
GAT
[ENA]
¢þ
>WENV170980500
MWSB01001225
[MWSB] mollusc metagenome; gill 31 cm from animal A
3503
3427
-
Ile
GAT
[ENA]
¢þ
>WENV170980586
MWSC01002916
[MWSC] mollusc metagenome; gill 70 cm from animal B
5139
5063
-
Ile
GAT
[ENA]
¢þ
>WENV170980609
MWSD01000029
[MWSD] mollusc metagenome; gill 40 cm from animal B
33337
33413
+
Ile
GAT
[ENA]
¢þ
>WENV170980686
MWSE01000034
[MWSE] mollusc metagenome; gill 28 cm from animal B
29147
29071
-
Ile
GAT
[ENA]
¢þ
>C181044107
CP020370
Gammaproteobacteria
Candidatus Thiodictyon syntrophicum Cad16T [CP020370]
895110
895186
+
Ile
GAT
-
¡û
>C181044117
CP020370
Gammaproteobacteria
Candidatus Thiodictyon syntrophicum Cad16T [CP020370]
1946403
1946479
+
Ile
GAT
-
¡û
>W09133848
ACQQ01000050
Gammaproteobacteria
Allochromatium vinosum DSM 180 [ACQQ]
1972
2048
+
Ile
GAT
[ENA]
¡û
>W1810236288
PPGH01000010
Gammaproteobacteria
Chromatium okenii LaCa [PPGH]
13946
13870
-
Ile
GAT
[ENA]
¡û
>W1810236315
PPGH01000035
Gammaproteobacteria
Chromatium okenii LaCa [PPGH]
146559
146483
-
Ile
GAT
[ENA]
¡û
>W1810236323
PPGH01000037
Gammaproteobacteria
Chromatium okenii LaCa [PPGH]
757407
757483
+
Ile
GAT
[ENA]
¡û
>C151016239
CP007031
Gammaproteobacteria
Marichromatium purpuratum 984 [CP007031]
296202
296278
+
Ile
GAT
[Ensembl]
¡û
>C151016255
CP007031
Gammaproteobacteria
Marichromatium purpuratum 984 [CP007031]
1453265
1453341
+
Ile
GAT
[Ensembl]
¡û
>C151016267
CP007031
Gammaproteobacteria
Marichromatium purpuratum 984 [CP007031]
3425821
3425745
-
Ile
GAT
[Ensembl]
¡û
>C10101192
CP001896
Gammaproteobacteria
Allochromatium vinosum DSM 180 [CP001896]
114051
114127
+
Ile
GAT
[Ensembl]
¡û
>C10101216
CP001896
Gammaproteobacteria
Allochromatium vinosum DSM 180 [CP001896]
2906110
2906034
-
Ile
GAT
[Ensembl]
¡û
>C10101231
CP001896
Gammaproteobacteria
Allochromatium vinosum DSM 180 [CP001896]
2025450
2025374
-
Ile
GAT
[Ensembl]
¡û
>W11176011
AFWS01000008
Gammaproteobacteria
Thiorhodovibrio frisius 970 [AFWS]
48261
48337
+
Ile
GAT
[ENA]
¡û
>W11176039
AFWT01000001
Gammaproteobacteria
Thiorhodococcus drewsii AZ1 [AFWT]
66606
66530
-
Ile
GAT
[ENA]
¡û
>W11176121
AFWU01000015
Gammaproteobacteria
Marichromatium purpuratum 984 [AFWU]
2038
2114
+
Ile
GAT
[ENA]
¡û
>W11176147
AFWV01000002
Gammaproteobacteria
Thiocapsa marina 5811 [AFWV]
72100
72176
+
Ile
GAT
[ENA]
¡û
>W11178635
AGFC01000063
Gammaproteobacteria
Thiocystis violascens DSM 198 [AGFC]
16592
16668
+
Ile
GAT
[ENA]
¡û
>C121006995
CP003154
Gammaproteobacteria
Thiocystis violascens DSM 198 [CP003154]
4381548
4381624
+
Ile
GAT
[Ensembl]
¡û
>C121007014
CP003154
Gammaproteobacteria
Thiocystis violascens DSM 198 [CP003154]
2905444
2905368
-
Ile
GAT
[Ensembl]
¡û
>C121007017
CP003154
Gammaproteobacteria
Thiocystis violascens DSM 198 [CP003154]
2088392
2088316
-
Ile
GAT
[Ensembl]
¡û
>W1610922903
LSYU01000094
Gammaproteobacteria
Marichromatium gracile [LSYU]
2961
2885
-
Ile
GAT
[ENA]
¡û
>WENV079166
AASZ01002270
Olavius algarvensis microbiome from Mediterranean sea
5959
5881
-
Ile
GAT
[ENA]
>W1710529485
FNNZ01000060
Gammaproteobacteria
Thiocapsa roseopersicina [FNNZ]
1967
2043
+
Ile
GAT
[ENA]
¡û
>W1710530618
FNOW01000069
Gammaproteobacteria
Allochromatium warmingii [FNOW]
3568
3492
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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