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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281715 (16 seq.)
>W1710880306
LMSG01000004
Actinomycetota
Arthrobacter sp. Soil762 [LMSG]
68326
68400
+
Arg
ACG
[ENA]
¡û
>W1711724070
MTPV01000034
Actinomycetota
Arthrobacter sp. SRS-W-1-2016 [MTPV]
61024
61100
+
Arg
ACG
[ENA]
¡û
>WENV180016391
FSUT01000776
[FSUT] metagenome; soil
308
382
+
Arg
ACG
[ENA]
¢þ
>W141065991
AQRI01000008
Actinomycetota
Arthrobacter sp. MA-N2 [AQRI]
136274
136198
-
Arg
ACG
[ENA]
¡û
>C181000336
AP014718
Actinomycetota
Arthrobacter sp. Hiyo4 [AP014718]
562888
562814
-
Arg
ACG
-
¡û
>C181033528
CP018863
Actinomycetota
Arthrobacter crystallopoietes DSM 20117 [CP018863]
2144758
2144682
-
Arg
ACG
-
¡û
>C191188307
CP041188
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502772 [CP041188]
1205679
1205605
-
Arg
ACG
-
¡û
>W1910182082
BJMO01000022
Actinomycetota
Sinomonas atrocyanea NBRC 12956 [BJMO]
9286
9210
-
Arg
ACG
[ENA]
¡û
>W1911532758
OIVI01000388
Actinomycetota
Arthrobacter alpinus [OIVI]
17129
17055
-
Arg
ACG
[ENA]
¡û
>W1810167952
PJIW01000021
Actinomycetota
Arthrobacter sp. 4R501 [PJIW]
21941
21867
-
Arg
ACG
[ENA]
¡û
>W1810707044
QMKP01000004
Actinomycetota
Arthrobacter sp. AQ5-06 [QMKP]
210578
210504
-
Arg
ACG
[ENA]
¡û
>W1511398241
JTDL01000109
Actinomycetota
Sinomonas humi MUSC 117 [JTDL]
2577
2651
+
Arg
ACG
[ENA]
¡û
>C161060721
CP013747
Actinomycetota
Pseudarthrobacter sulfonivorans Ar51 [CP013747]
1555971
1556045
+
Arg
ACG
[Ensembl]
¡û
>C161073249
CP014518
Actinomycetota
Sinomonas atrocyanea KCTC 3377 [CP014518]
658076
658000
-
Arg
ACG
[Ensembl]
¡û
>W1610742652
LMSG01000004
Actinomycetota
Arthrobacter sp. Soil762 [LMSG]
68326
68400
+
Arg
ACG
[ENA]
¡û
>W1710526390
FNKH01000002
Actinomycetota
Arthrobacter crystallopoietes [FNKH]
1346488
1346564
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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