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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281959 (46 seq.)
>W1711127835
LURA01000002
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
4109
4034
-
Ala
CGC
[ENA]
¡û
>W1711127881
LURB01000020
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
2742
2817
+
Ala
CGC
[ENA]
¡û
>W1711942676
NBBI01000002
Alphaproteobacteria
Sphingomonas dokdonensis [NBBI]
163190
163115
-
Ala
CGC
[ENA]
¡û
>W131162108
AQYH01000016
Alphaproteobacteria
Kaistia granuli DSM 23481 [AQYH]
27142
27067
-
Ala
CGC
[ENA]
¡û
>W131186356
ARWB01000001
Alphaproteobacteria
Methylopila sp. M107 [ARWB]
3656329
3656404
+
Ala
CGC
[ENA]
¡û
>WENV181168928
OEIV010000022
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
85525
85450
-
Ala
CGC
[ENA]
¢þ
>WENV181390260
OFRO01032655
[OFRO] wastewater metagenome; Exp Tend NO 10WW
719
794
+
Ala
CGC
[ENA]
¢þ
>W141278419
JAFM01000001
Alphaproteobacteria
Hyphomicrobium sp. 802 [JAFM]
171171
171096
-
Ala
CGC
[ENA]
¡û
>WENV183630918
OOGU01008875
[OOGU] marine metagenome; sea ice
43
118
+
Ala
CGC
[ENA]
¢þ
>WENV183631157
OOGU01042393
[OOGU] marine metagenome; sea ice
278
353
+
Ala
CGC
[ENA]
¢þ
>WENV170002452
AGTN01034498
[AGTN] bioreactor metagenome; poplar biomass
530
605
+
Ala
CGC
[ENA]
¢þ
>WENV170003037
AGTN01207752
[AGTN] bioreactor metagenome; poplar biomass
89
14
-
Ala
CGC
[ENA]
¢þ
>WENV170229627
CEQG01140741
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
283
358
+
Ala
CGC
[ENA]
¢þ
>WENV170759517
LUMT01000002
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
1070001
1069926
-
Ala
CGC
[ENA]
¢þ
>WENV170886339
MDTC01219708
[MDTC] marine metagenome; seawater
2408
2333
-
Ala
CGC
[ENA]
¢þ
>WENV171003153
NNBT01001949
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
336
261
-
Ala
CGC
[ENA]
¢þ
>C191000585
AP017898
Alphaproteobacteria
Sphingopyxis sp. FD7 [AP017898]
1704984
1704909
-
Ala
CGC
-
¡û
>C191163819
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
2512147
2512072
-
Ala
CGC
-
¡û
>W141730086
JNIB01000001
Alphaproteobacteria
Xanthobacter sp. 91 [JNIB]
2244683
2244608
-
Ala
CGC
[ENA]
¡û
>W1910501464
FYAN01000003
Alphaproteobacteria
Pannonibacter sp. I15F10I1 [FYAN]
176286
176361
+
Ala
CGC
[ENA]
¡û
>W1910501782
FYAT01000017
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
100505
100580
+
Ala
CGC
[ENA]
¡û
>W1910501842
FYAV01000022
Alphaproteobacteria
Stappia sp. TSB10GB4 [FYAV]
17013
17088
+
Ala
CGC
[ENA]
¡û
>W1910549098
FZPA01000001
Alphaproteobacteria
Sphingopyxis indica DS15 [FZPA]
903277
903202
-
Ala
CGC
[ENA]
¡û
>SRA1000139
SRR001036.40545
Marine Viruses from Arctic Ocean (SRP000129)
17
92
+
Ala
CGC
[SRA]
>W1911719047
QQWW01000001
Alphaproteobacteria
Sphingomonas sp. ABOLG ABOLG S-NIH.Pt13_0512 [QQWW]
266214
266139
-
Ala
CGC
[ENA]
¡û
>W1810090333
PGFU01000002
Alphaproteobacteria
Sphingomonas carotinifaciens B093034 [PGFU]
461698
461623
-
Ala
CGC
[ENA]
¡û
>W1810107981
PHFW01000003
Alphaproteobacteria
Sphingopyxis lindanitolerans WS5A3p [PHFW]
1521331
1521406
+
Ala
CGC
[ENA]
¡û
>W1810324343
PUDR01000008
Alphaproteobacteria
Pannonibacter carbonis Q4.6 [PUDR]
80218
80143
-
Ala
CGC
[ENA]
¡û
>W1810463435
PZZN01000003
Alphaproteobacteria
Sphingomonas aerolata NW12 [PZZN]
570763
570688
-
Ala
CGC
[ENA]
¡û
>W1810538550
QDFY01000007
Alphaproteobacteria
Sphingosinicella terrae KCTC 52780 [QDFY]
169418
169343
-
Ala
CGC
[ENA]
¡û
>W1810586273
QFFF01000001
Alphaproteobacteria
Sphingosinicella humi QZX222 [QFFF]
1785380
1785305
-
Ala
CGC
[ENA]
¡û
>C151044405
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
2151161
2151086
-
Ala
CGC
[Ensembl]
¡û
>C151051521
CP009452
Alphaproteobacteria
Sphingopyxis sp. 113P3 [CP009452]
2488777
2488702
-
Ala
CGC
-
¡û
>C11111388
FQ859181
Alphaproteobacteria
Hyphomicrobium sp. MC1 [FQ859181]
4331271
4331196
-
Ala
CGC
[Ensembl]
¡û
>C161043650
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
1838485
1838560
+
Ala
CGC
[Ensembl]
¡û
>W1610071391
BCUA01000110
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
8226
8301
+
Ala
CGC
[ENA]
¡û
>W1610074535
BCWT01000111
Alphaproteobacteria
Sphingomonas adhaesiva NBRC 15099 [BCWT]
7340
7265
-
Ala
CGC
[ENA]
¡û
>W1610667793
LJYW01000001
Alphaproteobacteria
Prosthecomicrobium hirschii [LJYW]
3029867
3029792
-
Ala
CGC
[ENA]
¡û
>W1610771671
LNSJ01000001
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
325982
326057
+
Ala
CGC
[ENA]
¡û
>W1610938949
LURA01000002
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
4109
4034
-
Ala
CGC
[ENA]
¡û
>W1610938995
LURB01000020
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
2742
2817
+
Ala
CGC
[ENA]
¡û
>W1710068756
BCUA01000110
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
8226
8301
+
Ala
CGC
[ENA]
¡û
>W1710071653
BCWT01000111
Alphaproteobacteria
Sphingomonas adhaesiva NBRC 15099 [BCWT]
7340
7265
-
Ala
CGC
[ENA]
¡û
>W1710508136
FMVW01000005
Alphaproteobacteria
Afifella marina DSM 2698 [FMVW]
172800
172875
+
Ala
CGC
[ENA]
¡û
>W1710542315
FNZB01000001
Alphaproteobacteria
Sphingomonas sp. OV641 [FNZB]
2154930
2155005
+
Ala
CGC
[ENA]
¡û
>W1710583202
FQUP01000004
Alphaproteobacteria
Kaistia soli DSM 19436 [FQUP]
403364
403289
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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