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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282052 (29 seq.)
>W1710926312
LOEE01000027
Bacillota
Thermotalea metallivorans [LOEE]
111242
111167
-
Lys
TTT
[ENA]
¡û
>W1710926343
LOEE01000061
Bacillota
Thermotalea metallivorans [LOEE]
49346
49271
-
Lys
TTT
[ENA]
¡û
>W1710926364
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
1536
1611
+
Lys
TTT
[ENA]
¡û
>W1710926369
LOEE01000072
Bacillota
Thermotalea metallivorans [LOEE]
72979
72904
-
Lys
TTT
[ENA]
¡û
>W1710926378
LOEE01000098
Bacillota
Thermotalea metallivorans [LOEE]
793
718
-
Lys
TTT
[ENA]
¡û
>C171059796
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
3236283
3236358
+
Lys
TTT
-
¡û
>C171059822
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
3956142
3956217
+
Lys
TTT
-
¡û
>C171059841
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
2926069
2925994
-
Lys
TTT
-
¡û
>C171059862
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
1947907
1947832
-
Lys
TTT
-
¡û
>C171059886
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
761356
761281
-
Lys
TTT
-
¡û
>C171059902
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
619485
619410
-
Lys
TTT
-
¡û
>WENV183746026
POVV01004207
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
1963
2038
+
Lys
TTT
[ENA]
¢þ
>WENV183746149
POVV01010350
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
30
105
+
Lys
TTT
[ENA]
¢þ
>WENV183746175
POVV01012035
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
438
363
-
Lys
TTT
[ENA]
¢þ
>W1510725354
CXYX01000013
Bacillota
Inediibacterium massiliense mt12 [CXYX]
678380
678455
+
Lys
TTT
[ENA]
¡û
>W1510725370
CXYX01000015
Bacillota
Inediibacterium massiliense mt12 [CXYX]
903
978
+
Lys
TTT
[ENA]
¡û
>W1510725395
CXYX01000015
Bacillota
Inediibacterium massiliense mt12 [CXYX]
1635619
1635544
-
Lys
TTT
[ENA]
¡û
>W1610783805
LOEE01000027
Bacillota
Thermotalea metallivorans [LOEE]
111242
111167
-
Lys
TTT
[ENA]
¡û
>W1610783836
LOEE01000061
Bacillota
Thermotalea metallivorans [LOEE]
49346
49271
-
Lys
TTT
[ENA]
¡û
>W1610783857
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
1536
1611
+
Lys
TTT
[ENA]
¡û
>W1610783862
LOEE01000072
Bacillota
Thermotalea metallivorans [LOEE]
72979
72904
-
Lys
TTT
[ENA]
¡û
>W1610783871
LOEE01000098
Bacillota
Thermotalea metallivorans [LOEE]
793
718
-
Lys
TTT
[ENA]
¡û
>W1710508823
FMWL01000005
Bacillota
Acidaminobacter hydrogenoformans DSM 2784 [FMWL]
194455
194530
+
Lys
TTT
[ENA]
¡û
>W1710508835
FMWL01000018
Bacillota
Acidaminobacter hydrogenoformans DSM 2784 [FMWL]
2104
2179
+
Lys
TTT
[ENA]
¡û
>W1710508865
FMWL01000034
Bacillota
Acidaminobacter hydrogenoformans DSM 2784 [FMWL]
12276
12201
-
Lys
TTT
[ENA]
¡û
>W1710589042
FQZV01000009
Bacillota
Geosporobacter subterraneus DSM 17957 [FQZV]
33770
33845
+
Lys
TTT
[ENA]
¡û
>W1710589055
FQZV01000020
Bacillota
Geosporobacter subterraneus DSM 17957 [FQZV]
69820
69745
-
Lys
TTT
[ENA]
¡û
>W1710589065
FQZV01000030
Bacillota
Geosporobacter subterraneus DSM 17957 [FQZV]
36950
36875
-
Lys
TTT
[ENA]
¡û
>W1710589082
FQZV01000097
Bacillota
Geosporobacter subterraneus DSM 17957 [FQZV]
14
89
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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