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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282056 (29 seq.)
>W1711504169
MKUH01000019
Betaproteobacteria
Candidatus Accumulibacter sp. 66-26 [MKUH]
48991
49067
+
Met
CAT
[ENA]
¡û
>W131176288
ARJX01000046
Betaproteobacteria
Aromatoleum toluclasticum ATCC 700605 [ARJX]
365501
365577
+
Met
CAT
[ENA]
¡û
>W131223599
AUCE01000017
Betaproteobacteria
Azonexus hydrophilus DSM 23864 [AUCE]
75897
75821
-
Met
CAT
[ENA]
¡û
>W131223749
AUCH01000005
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
55104
55028
-
Met
CAT
[ENA]
¡û
>C007496
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
3778324
3778248
-
Met
CAT
[Ensembl]
¡û
>WENV180311591
OBJT01398211
[OBJT] soil metagenome; soil
202
126
-
Met
CAT
[ENA]
¢þ
>WENV181171766
OEIV010346084
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
271
347
+
Met
CAT
[ENA]
¢þ
>WENV181221704
OFCW01002549
[OFCW] microbial mat metagenome; Microbial Mat
879
955
+
Met
CAT
[ENA]
¢þ
>WENV181231437
OFEK01027738
[OFEK] activated sludge metagenome; Anaerobic digester
471
547
+
Met
CAT
[ENA]
¢þ
>WENV181311236
OFJB01000365
[OFJB] sludge metagenome; sludge
18115
18191
+
Met
CAT
[ENA]
¢þ
>WENV181414628
OGCL01000856
[OGCL] hot springs metagenome; Hot spring water
20241
20165
-
Met
CAT
[ENA]
¢þ
>WENV181731398
OGQD01000667
[OGQD] human gut metagenome; faeces
9957
10033
+
Met
CAT
[ENA]
¢þ
>WENV181834913
OGVG01014849
[OGVG] freshwater metagenome; freshwater
253
329
+
Met
CAT
[ENA]
¢þ
>W141277622
JAET01000001
Betaproteobacteria
Dechloromonas agitata is5 [JAET]
1665587
1665663
+
Met
CAT
[ENA]
¡û
>WENV170009496
APMI01000423
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
33305
33229
-
Met
CAT
[ENA]
¢þ
>WENV170011237
APMI01051627
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
114
38
-
Met
CAT
[ENA]
¢þ
>WENV170573135
FLYJ01000340
[FLYJ] hot springs metagenome; Sediment
562
486
-
Met
CAT
[ENA]
¢þ
>WENV170653402
JRYJ01000014
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
21363
21439
+
Met
CAT
[ENA]
¢þ
>WENV170690869
LFRM01367130
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1730
1806
+
Met
CAT
[ENA]
¢þ
>C181060414
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
2419024
2419100
+
Met
CAT
-
¡û
>C181060452
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
464526
464602
+
Met
CAT
-
¡û
>C191019202
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
926600
926524
-
Met
CAT
-
¡û
>W09100878
AADF01000002
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
291381
291457
+
Met
CAT
[ENA]
¡û
>W1810005492
BFBP01000006
Betaproteobacteria
Azospira sp. I13 [BFBP]
27718
27642
-
Met
CAT
[ENA]
¡û
>W11114446
ADDK02000010
Betaproteobacteria
Azospira oryzae PS [ADDK]
15614
15690
+
Met
CAT
[ENA]
¡û
>C121006971
CP003153
Betaproteobacteria
Azospira oryzae PS [CP003153]
1245589
1245513
-
Met
CAT
[Ensembl]
¡û
>C131000340
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
800979
800903
-
Met
CAT
[Ensembl]
¡û
>WENV080200
AATO01011982
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
408
486
+
Met
CAT
[ENA]
>W1710595734
FTMD01000004
Betaproteobacteria
Aromatoleum tolulyticum tolulyticus [FTMD]
357479
357555
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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