This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282058 (66 seq.)
>W131158387
AQUA01000002
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
111739
111663
-
Asp
GTC
[ENA]
¡û
>W131158419
AQUB01000001
Actinomycetota
actinobacterium SCGC AAA023-J06 [AQUB]
18484
18560
+
Asp
GTC
[ENA]
¡û
>W131162571
AQYZ01000006
Actinomycetota
actinobacterium SCGC AAA024-D14 [AQYZ]
32124
32048
-
Asp
GTC
[ENA]
¡û
>W131162939
AQZI01000002
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
146035
145959
-
Asp
GTC
[ENA]
¡û
>W131183099
ARRO01000001
Actinomycetota
actinobacterium SCGC AAA027-M14 [ARRO]
71130
71056
-
Asp
GTC
[ENA]
¡û
>W131237915
AUSE01000058
Actinomycetota
actinobacterium SCGC AAA028-I14 [AUSE]
33320
33244
-
Asp
GTC
[ENA]
¡û
>WENV016719
AACY020468813
Marine microbial communities from Global Ocean Sampling (GOS)
2766
2842
+
Asp
GTC
[ENA]
>WENV180110832
OAPN01008857
[OAPN] marine metagenome; 2011
453
379
-
Asp
GTC
[ENA]
¢þ
>WENV180357466
OBNN01013519
[OBNN] marine metagenome; Coastal water
378
304
-
Asp
GTC
[ENA]
¢þ
>WENV180357925
OBNO01020686
[OBNO] marine metagenome; ENVO 00002150
216
290
+
Asp
GTC
[ENA]
¢þ
>WENV181307895
OFIS01000022
[OFIS] sludge metagenome; sludge
176757
176683
-
Asp
GTC
[ENA]
¢þ
>WENV181368381
OFQL01001686
[OFQL] freshwater metagenome; Freshwater Lake
1373
1447
+
Asp
GTC
[ENA]
¢þ
>WENV181369946
OFQR01002983
[OFQR] freshwater metagenome; Freshwater Lake
461
387
-
Asp
GTC
[ENA]
¢þ
>WENV181370304
OFQS01002740
[OFQS] freshwater metagenome; Freshwater Lake
867
941
+
Asp
GTC
[ENA]
¢þ
>WENV181370635
OFQT01001323
[OFQT] freshwater metagenome; Freshwater Lake
2160
2234
+
Asp
GTC
[ENA]
¢þ
>WENV181379809
OFRD01009706
[OFRD] wastewater metagenome; Exp Tend CN 100WW
354
280
-
Asp
GTC
[ENA]
¢þ
>WENV181386965
OFRL01027489
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
701
775
+
Asp
GTC
[ENA]
¢þ
>WENV181395841
OFSB01008869
[OFSB] freshwater metagenome; Freshwater Lake
151
77
-
Asp
GTC
[ENA]
¢þ
>WENV181399419
OFSE01030643
[OFSE] wastewater metagenome; Exp Tend VB 50WW
451
377
-
Asp
GTC
[ENA]
¢þ
>WENV181400396
OFSF01005580
[OFSF] wastewater metagenome; Exp Tend VB 100WW
919
845
-
Asp
GTC
[ENA]
¢þ
>WENV181400990
OFSF01039922
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1
75
+
Asp
GTC
[ENA]
¢þ
>WENV181836024
OGVJ01000089
[OGVJ] freshwater metagenome; freshwater
309
383
+
Asp
GTC
[ENA]
¢þ
>WENV181836828
OGVJ01035357
[OGVJ] freshwater metagenome; freshwater
264
338
+
Asp
GTC
[ENA]
¢þ
>WENV181843299
OGVU01007349
[OGVU] freshwater metagenome; freshwater
986
912
-
Asp
GTC
[ENA]
¢þ
>WENV181852442
OGWF01024275
[OGWF] freshwater metagenome; freshwater
540
613
+
Asp
GTC
[ENA]
¢þ
>W141202931
AZHS01000010
Actinomycetota
actinobacterium SCGC AAA041-L13 [AZHS]
29219
29295
+
Asp
GTC
[ENA]
¡û
>WENV183674229
ORJL011363630
[ORJL] groundwater metagenome; groundwater
3289
3215
-
Asp
GTC
[ENA]
¢þ
>WENV170601499
FUWD010176778
[FUWD] metagenome; unknown
369
445
+
Asp
GTC
[ENA]
¢þ
>WENV170601539
FUWD010178695
[FUWD] metagenome; unknown
463
387
-
Asp
GTC
[ENA]
¢þ
>WENV170604267
FUWD010381624
[FUWD] metagenome; unknown
451
375
-
Asp
GTC
[ENA]
¢þ
>WENV170605996
FUWD010582927
[FUWD] metagenome; unknown
385
309
-
Asp
GTC
[ENA]
¢þ
>WENV170609680
FUWD011467302
[FUWD] metagenome; unknown
312
236
-
Asp
GTC
[ENA]
¢þ
>WENV170617946
FUWD012944965
[FUWD] metagenome; unknown
342
266
-
Asp
GTC
[ENA]
¢þ
>WENV170625445
FUWD013197667
[FUWD] metagenome; unknown
3433
3357
-
Asp
GTC
[ENA]
¢þ
>WENV170633685
FUWD013400194
[FUWD] metagenome; unknown
3433
3357
-
Asp
GTC
[ENA]
¢þ
>WENV170645543
JNSK01000093
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1428
1504
+
Asp
GTC
[ENA]
¢þ
>WENV170961766
MLJW01001084
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
4022
3948
-
Asp
GTC
[ENA]
¢þ
>C181018675
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
337594
337520
-
Asp
GTC
-
¡û
>C181018709
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
380146
380072
-
Asp
GTC
-
¡û
>C181018746
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
416224
416150
-
Asp
GTC
-
¡û
>C181020854
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
1338053
1338127
+
Asp
GTC
-
¡û
>C181020891
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
1222301
1222375
+
Asp
GTC
-
¡û
>C181020965
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
1229400
1229474
+
Asp
GTC
-
¡û
>C181021001
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
1216405
1216479
+
Asp
GTC
-
¡û
>C181021037
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
1192031
1192105
+
Asp
GTC
-
¡û
>C181021075
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
1185391
1185465
+
Asp
GTC
-
¡û
>C181021107
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
1270639
1270713
+
Asp
GTC
-
¡û
>C181021149
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
1205016
1205090
+
Asp
GTC
-
¡û
>C181021185
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
1187683
1187757
+
Asp
GTC
-
¡û
>C181021263
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
1262744
1262818
+
Asp
GTC
-
¡û
>C181021299
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
1131073
1131147
+
Asp
GTC
-
¡û
>C181021349
CP016782
Actinomycetota
Candidatus Planktophila limnetica [CP016782]
92419
92345
-
Asp
GTC
-
¡û
>C181021376
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
1286258
1286332
+
Asp
GTC
-
¡û
>WENV040385
AACY022080096
Marine microbial communities from Global Ocean Sampling (GOS)
497
421
-
Asp
GTC
[ENA]
>WENV047179
AACY022644540
Marine microbial communities from Global Ocean Sampling (GOS)
349
273
-
Asp
GTC
[ENA]
>WENV057292
AACY023290432
Marine microbial communities from Global Ocean Sampling (GOS)
362
286
-
Asp
GTC
[ENA]
>WENV057365
AACY023292596
Marine microbial communities from Global Ocean Sampling (GOS)
586
662
+
Asp
GTC
[ENA]
>WENV057388
AACY023293364
Marine microbial communities from Global Ocean Sampling (GOS)
445
521
+
Asp
GTC
[ENA]
>WENV057644
AACY023301148
Marine microbial communities from Global Ocean Sampling (GOS)
595
671
+
Asp
GTC
[ENA]
>WENV058057
AACY023315890
Marine microbial communities from Global Ocean Sampling (GOS)
1012
1088
+
Asp
GTC
[ENA]
>WENV058284
AACY023323338
Marine microbial communities from Global Ocean Sampling (GOS)
111
187
+
Asp
GTC
[ENA]
>WENV058715
AACY023339333
Marine microbial communities from Global Ocean Sampling (GOS)
8
84
+
Asp
GTC
[ENA]
>WENV058753
AACY023340212
Marine microbial communities from Global Ocean Sampling (GOS)
708
784
+
Asp
GTC
[ENA]
>WENV058852
AACY023344380
Marine microbial communities from Global Ocean Sampling (GOS)
1221
1297
+
Asp
GTC
[ENA]
>WENV059001
AACY023350283
Marine microbial communities from Global Ocean Sampling (GOS)
1000
1076
+
Asp
GTC
[ENA]
>WENV074559
AACY023983013
Marine microbial communities from Global Ocean Sampling (GOS)
724
648
-
Asp
GTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK