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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282062 (67 seq.)
>W1711188775
LWQT01000038
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
81563
81639
+
Asp
GTC
[ENA]
¡û
>W1711384705
MEDI01000347
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
18250
18174
-
Asp
GTC
[ENA]
¡û
>W1711384706
MEDI01000347
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
18032
17956
-
Asp
GTC
[ENA]
¡û
>C171041986
CP015848
Alphaproteobacteria
Magnetospirillum sp. ME-1 [CP015848]
1975139
1975063
-
Asp
GTC
-
¡û
>W131094249
AONQ01000026
Alphaproteobacteria
Paramagnetospirillum caucaseum SO-1 [AONQ]
31440
31364
-
Asp
GTC
[ENA]
¡û
>W131162119
AQYH01000020
Alphaproteobacteria
Kaistia granuli DSM 23481 [AQYH]
145817
145893
+
Asp
GTC
[ENA]
¡û
>W131162120
AQYH01000020
Alphaproteobacteria
Kaistia granuli DSM 23481 [AQYH]
146026
146102
+
Asp
GTC
[ENA]
¡û
>W131166489
ARCM01000005
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
191668
191592
-
Asp
GTC
[ENA]
¡û
>W131175670
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
1065258
1065334
+
Asp
GTC
[ENA]
¡û
>W131230384
AUHO01000006
Alphaproteobacteria
Kaistia adipata DSM 17808 [AUHO]
44378
44454
+
Asp
GTC
[ENA]
¡û
>W131230385
AUHO01000006
Alphaproteobacteria
Kaistia adipata DSM 17808 [AUHO]
44584
44660
+
Asp
GTC
[ENA]
¡û
>C013767
AP007255
Alphaproteobacteria
Magnetospirillum magneticum AMB-1 [AP007255]
2973894
2973818
-
Asp
GTC
[Ensembl]
¡û
>w015404
AAPC01000004
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
276786
276862
+
Asp
GTC
[ENA]
¡û
>WENV180102373
OAOY01014772
[OAOY] marine metagenome; Water
507
431
-
Asp
GTC
[ENA]
¢þ
>WENV180320660
OBKQ01004788
[OBKQ] soil metagenome; Clay
840
764
-
Asp
GTC
[ENA]
¢þ
>WENV180343287
OBLK01001853
[OBLK] soil metagenome; Clay
1548
1472
-
Asp
GTC
[ENA]
¢þ
>w001845
AAAP01003738
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
6863
6790
-
Asp
GTC
[ENA]
¡û
>W141065509
AQPH01000081
Alphaproteobacteria
Magnetospirillum fulvum MGU-K5 [AQPH]
2947
2871
-
Asp
GTC
[ENA]
¡û
>WENV181292788
OFHF01018012
[OFHF] soil metagenome; Clay
39
115
+
Asp
GTC
[ENA]
¢þ
>WENV181293330
OFHG01001479
[OFHG] soil metagenome; Clay
2009
2085
+
Asp
GTC
[ENA]
¢þ
>WENV181295464
OFHI01044882
[OFHI] soil metagenome; Clay
176
252
+
Asp
GTC
[ENA]
¢þ
>WENV181295730
OFHJ01000298
[OFHJ] soil metagenome; Clay
5047
4971
-
Asp
GTC
[ENA]
¢þ
>WENV181296247
OFHJ01017291
[OFHJ] soil metagenome; Clay
1321
1397
+
Asp
GTC
[ENA]
¢þ
>WENV181307976
OFIS01000069
[OFIS] sludge metagenome; sludge
92745
92821
+
Asp
GTC
[ENA]
¢þ
>WENV181312430
OFJB01115362
[OFJB] sludge metagenome; sludge
411
487
+
Asp
GTC
[ENA]
¢þ
>WENV181401882
OFTX01014788
[OFTX] sludge metagenome; sludge
935
859
-
Asp
GTC
[ENA]
¢þ
>WENV181402048
OFTY01000057
[OFTY] sludge metagenome; sludge
92501
92577
+
Asp
GTC
[ENA]
¢þ
>W141151383
AXBA01000016
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
83087
83011
-
Asp
GTC
[ENA]
¡û
>C08011448
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
4021933
4022009
+
Asp
GTC
[Ensembl]
¡û
>C08000336
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
1846897
1846824
-
Asp
GTC
[Ensembl]
¡û
>W141241809
CAHP01000020
Alphaproteobacteria
Magnetospirillum molischianum DSM 120 [CAHP]
223697
223621
-
Asp
GTC
[ENA]
¡û
>W141275987
JADL01000005
Alphaproteobacteria
Rhodospirillales bacterium URHD0088 [JADL]
63191
63267
+
Asp
GTC
[ENA]
¡û
>W141278479
JAFO01000001
Alphaproteobacteria
Xanthobacter sp. 126 [JAFO]
2383607
2383683
+
Asp
GTC
[ENA]
¡û
>WENV170706021
LNAP01000861
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1515
1591
+
Asp
GTC
[ENA]
¢þ
>WENV170961547
MLJW01000136
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
52066
52142
+
Asp
GTC
[ENA]
¢þ
>WENV170961573
MLJW01000173
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
38703
38627
-
Asp
GTC
[ENA]
¢þ
>WENV170961574
MLJW01000173
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
38539
38463
-
Asp
GTC
[ENA]
¢þ
>C181155065
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
929087
929163
+
Asp
GTC
-
¡û
>C181155115
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
929087
929163
+
Asp
GTC
-
¡û
>C191005707
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
1001611
1001535
-
Asp
GTC
-
¡û
>C191158412
CP038231
Alphaproteobacteria
Formicincola oecophyllae F3b2 [CP038231]
745964
746040
+
Asp
GTC
-
¡û
>W141730077
JNIB01000001
Alphaproteobacteria
Xanthobacter sp. 91 [JNIB]
4968800
4968724
-
Asp
GTC
[ENA]
¡û
>W141733762
JNLC01000017
Alphaproteobacteria
Bosea sp. 117 [JNLC]
36610
36686
+
Asp
GTC
[ENA]
¡û
>W1910498972
FXXN01000023
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
112024
111948
-
Asp
GTC
[ENA]
¡û
>W1911653504
QDFX01000002
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
197279
197203
-
Asp
GTC
[ENA]
¡û
>W1810150159
PIUM01000003
Alphaproteobacteria
Telmatospirillum siberiense 26-4b1 [PIUM]
208280
208204
-
Asp
GTC
[ENA]
¡û
>W1810150188
PIUM01000036
Alphaproteobacteria
Telmatospirillum siberiense 26-4b1 [PIUM]
58347
58271
-
Asp
GTC
[ENA]
¡û
>W1810273159
PSNV01000003
Alphaproteobacteria
Kaistia algarum LYH11 [PSNV]
152278
152202
-
Asp
GTC
[ENA]
¡û
>W1810658594
QJJK01000006
Alphaproteobacteria
Chelatococcus asaccharovorans DSM 6462 [QJJK]
243886
243810
-
Asp
GTC
[ENA]
¡û
>C151101076
HG794546
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 v2 [HG794546]
1370277
1370201
-
Asp
GTC
[Ensembl]
¡û
>W10110064
ADBQ01000003
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
87752
87828
+
Asp
GTC
[ENA]
¡û
>C10112216
CP002026
Alphaproteobacteria
Ancylobacter novellus DSM 506 [CP002026]
1952951
1952875
-
Asp
GTC
[Ensembl]
¡û
>W11112501
ADBQ01000003
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
87752
87828
+
Asp
GTC
[ENA]
¡û
>W1511510906
JXSL01000028
Alphaproteobacteria
Paramagnetospirillum magnetotacticum MS-1 [JXSL]
89489
89413
-
Asp
GTC
[ENA]
¡û
>W1511569459
LAJY01000577
Alphaproteobacteria
Elstera litoralis Dia-1 [LAJY]
901
825
-
Asp
GTC
[ENA]
¡û
>C121005261
CP003075
Alphaproteobacteria
Pelagibacterium halotolerans B2 [CP003075]
1484464
1484388
-
Asp
GTC
[Ensembl]
¡û
>C161001654
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
3577159
3577235
+
Asp
GTC
[Ensembl]
¡û
>C161048034
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
1444029
1443953
-
Asp
GTC
-
¡û
>C161108112
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
844001
843925
-
Asp
GTC
[Ensembl]
¡û
>C161108398
LN997848
Alphaproteobacteria
Magnetospirillum sp. XM-1 [LN997848]
3593110
3593034
-
Asp
GTC
-
¡û
>W1610990894
LWQT01000038
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
81563
81639
+
Asp
GTC
[ENA]
¡û
>W1710505288
FMTP01000001
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
690508
690584
+
Asp
GTC
[ENA]
¡û
>W1710533664
FNRH01000002
Alphaproteobacteria
Pelagibacterium halotolerans H642 [FNRH]
140241
140165
-
Asp
GTC
[ENA]
¡û
>W1710540194
FNWO01000004
Alphaproteobacteria
Magnetospirillum fulvum [FNWO]
239051
238975
-
Asp
GTC
[ENA]
¡û
>W1710582167
FPKU01000001
Alphaproteobacteria
Devosia enhydra [FPKU]
1197254
1197178
-
Asp
GTC
[ENA]
¡û
>W1710583182
FQUP01000001
Alphaproteobacteria
Kaistia soli DSM 19436 [FQUP]
204420
204344
-
Asp
GTC
[ENA]
¡û
>W1710593753
FRXO01000001
Alphaproteobacteria
Pseudoxanthobacter soli DSM 19599 [FRXO]
220724
220800
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK