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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282077 (73 seq.)
>W1710861001
LMDI01000011
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
58426
58350
-
Gln
TTG
[ENA]
¡û
>W1710861556
LMDS01000004
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
1489325
1489401
+
Gln
TTG
[ENA]
¡û
>W1710861858
LMDY01000012
Betaproteobacteria
Methylibium sp. Root1272 [LMDY]
76153
76229
+
Gln
TTG
[ENA]
¡û
>W1710893616
LNEY01000010
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
20020
20096
+
Gln
TTG
[ENA]
¡û
>C171035779
CP015118
Betaproteobacteria
Piscinibacter gummiphilus NS21 [CP015118]
1100862
1100786
-
Gln
TTG
-
¡û
>C171065570
CP017668
Betaproteobacteria
Jeongeupia sp. USM3 [CP017668]
2683265
2683341
+
Gln
TTG
-
¡û
>W131236952
AUMS01000006
Betaproteobacteria
Chitinilyticum aquatile DSM 21506 [AUMS]
40026
40102
+
Gln
TTG
[ENA]
¡û
>C013933
CP000555
Betaproteobacteria
Methylibium petroleiphilum PM1 [CP000555]
3433310
3433234
-
Gln
TTG
[Ensembl]
¡û
>WENV180015706
FSSZ01000123
[FSSZ] metagenome; soil
887
811
-
Gln
TTG
[ENA]
¢þ
>WENV180016790
FSVW01002247
[FSVW] metagenome; soil
902
826
-
Gln
TTG
[ENA]
¢þ
>WENV180017816
FSXQ01003575
[FSXQ] metagenome; soil
95
19
-
Gln
TTG
[ENA]
¢þ
>WENV180017859
FSXQ01004916
[FSXQ] metagenome; soil
5235
5311
+
Gln
TTG
[ENA]
¢þ
>WENV180020877
FTDG01000615
[FTDG] metagenome; soil
733
657
-
Gln
TTG
[ENA]
¢þ
>WENV180023924
FTIF01004228
[FTIF] metagenome; soil
6088
6164
+
Gln
TTG
[ENA]
¢þ
>WENV180023949
FTIF01004944
[FTIF] metagenome; soil
5486
5562
+
Gln
TTG
[ENA]
¢þ
>WENV180023962
FTIF01005241
[FTIF] metagenome; soil
6648
6724
+
Gln
TTG
[ENA]
¢þ
>WENV180024187
FTIF01169036
[FTIF] metagenome; soil
476
552
+
Gln
TTG
[ENA]
¢þ
>WENV180024208
FTIF01262932
[FTIF] metagenome; soil
315
239
-
Gln
TTG
[ENA]
¢þ
>WENV180024314
FTIG01083545
[FTIG] metagenome; soil
139
215
+
Gln
TTG
[ENA]
¢þ
>WENV180025299
FTIN01188193
[FTIN] metagenome; soil
607
683
+
Gln
TTG
[ENA]
¢þ
>WENV180025602
FTIP01107021
[FTIP] metagenome; soil
293
217
-
Gln
TTG
[ENA]
¢þ
>WENV180025691
FTIP01363161
[FTIP] metagenome; soil
315
391
+
Gln
TTG
[ENA]
¢þ
>WENV180025982
FTIR01001432
[FTIR] metagenome; soil
11063
11139
+
Gln
TTG
[ENA]
¢þ
>WENV180028001
FTIZ01467597
[FTIZ] metagenome; soil
243
167
-
Gln
TTG
[ENA]
¢þ
>WENV180028073
FTIZ01668469
[FTIZ] metagenome; soil
5
81
+
Gln
TTG
[ENA]
¢þ
>WENV180030618
FTJN01001231
[FTJN] metagenome; soil
12008
12084
+
Gln
TTG
[ENA]
¢þ
>WENV180032826
FTKD01001490
[FTKD] metagenome; soil
48146
48070
-
Gln
TTG
[ENA]
¢þ
>WENV180032997
FTKD01030331
[FTKD] metagenome; soil
74724
74800
+
Gln
TTG
[ENA]
¢þ
>WENV180033022
FTKD01064333
[FTKD] metagenome; soil
377
301
-
Gln
TTG
[ENA]
¢þ
>WENV180033544
FTKK01359434
[FTKK] metagenome; soil
321
245
-
Gln
TTG
[ENA]
¢þ
>WENV180033920
FTKM01000903
[FTKM] metagenome; soil
1991
1915
-
Gln
TTG
[ENA]
¢þ
>WENV180035095
FTKT01001515
[FTKT] metagenome; soil
6086
6162
+
Gln
TTG
[ENA]
¢þ
>WENV180035135
FTKT01002664
[FTKT] metagenome; soil
5262
5338
+
Gln
TTG
[ENA]
¢þ
>WENV181227983
OFDN01096020
[OFDN] hot springs metagenome; Water
619
543
-
Gln
TTG
[ENA]
¢þ
>WENV181373297
OFQX01044498
[OFQX] wastewater metagenome; WWTP Novara (Effluent)
154
230
+
Gln
TTG
[ENA]
¢þ
>W141207203
AZND01000027
Betaproteobacteria
Methylibium sp. T29 [AZND]
24345
24269
-
Gln
TTG
[ENA]
¡û
>W141214246
AZSN01000045
Betaproteobacteria
Methylibium sp. T29-B [AZSN]
24326
24250
-
Gln
TTG
[ENA]
¡û
>WENV183697226
OUNJ010095104
[OUNJ] metagenome; soil
1057
1133
+
Gln
TTG
[ENA]
¢þ
>WENV170634599
FZPR01000359
[FZPR] metagenome; sediment
2713
2789
+
Gln
TTG
[ENA]
¢þ
>WENV170707601
LNAP01026831
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
496
572
+
Gln
TTG
[ENA]
¢þ
>WENV170709630
LNFM01000541
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
90536
90460
-
Gln
TTG
[ENA]
¢þ
>WENV170713674
LNFM01038271
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3696
3772
+
Gln
TTG
[ENA]
¢þ
>C181103523
CP024645
Betaproteobacteria
Piscinibacter gummiphilus NBRC 109400 [CP024645]
1100863
1100787
-
Gln
TTG
-
¡û
>C191064758
CP029606
Betaproteobacteria
Methylibium sp. Pch-M [CP029606]
1230102
1230026
-
Gln
TTG
-
¡û
>C191124950
CP034433
Betaproteobacteria
Iodobacter ciconiae H11R3 [CP034433]
3039089
3039165
+
Gln
TTG
-
¡û
>C191124951
CP034433
Betaproteobacteria
Iodobacter ciconiae H11R3 [CP034433]
3136915
3136991
+
Gln
TTG
-
¡û
>W09101395
AAEM01000006
Betaproteobacteria
Methylibium petroleiphilum PM1 [AAEM]
107768
107692
-
Gln
TTG
[ENA]
¡û
>W141779062
JONM01000010
Betaproteobacteria
Andreprevotia chitinilytica DSM 18519 [JONM]
96615
96539
-
Gln
TTG
[ENA]
¡û
>W1911647475
QAJN01000004
Betaproteobacteria
Paucibacter sp. KBW04 [QAJN]
32879
32955
+
Gln
TTG
[ENA]
¡û
>W1810068024
PDZG01000005
Betaproteobacteria
Iodobacter sp. BJB302 [PDZG]
223
147
-
Gln
TTG
[ENA]
¡û
>W1810068025
PDZG01000007
Betaproteobacteria
Iodobacter sp. BJB302 [PDZG]
89545
89621
+
Gln
TTG
[ENA]
¡û
>SRA1002920
SRR002326.102118
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
82
158
+
Gln
TTG
[SRA]
>SRA1003334
SRR002326.397668
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
175
251
+
Gln
TTG
[SRA]
>SRA1003377
SRR002326.421428
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
67
143
+
Gln
TTG
[SRA]
>SRA1003614
SRR002327.68507
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
248
172
-
Gln
TTG
[SRA]
>W1810222837
POSP01000003
Betaproteobacteria
Paucibacter aquatile CR182 [POSP]
1884940
1885016
+
Gln
TTG
[ENA]
¡û
>SRA1004034
SRR002328.106513
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
155
79
-
Gln
TTG
[SRA]
>W1511432406
JUGM01000016
Betaproteobacteria
Methylibium sp. CF059 [JUGM]
177143
177067
-
Gln
TTG
[ENA]
¡û
>W1511552215
JZUG01000010
Betaproteobacteria
Janthinobacterium sp. B9-8 [JZUG]
243667
243591
-
Gln
TTG
[ENA]
¡û
>W1511552216
JZUG01000010
Betaproteobacteria
Janthinobacterium sp. B9-8 [JZUG]
117046
116970
-
Gln
TTG
[ENA]
¡û
>C161059580
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545 [CP013692]
374510
374434
-
Gln
TTG
[Ensembl]
¡û
>C161068566
CP014222
Betaproteobacteria
Janthinobacterium sp. B9-8 [CP014222]
3898926
3898850
-
Gln
TTG
[Ensembl]
¡û
>C161068567
CP014222
Betaproteobacteria
Janthinobacterium sp. B9-8 [CP014222]
3772305
3772229
-
Gln
TTG
[Ensembl]
¡û
>W1610049628
BBFD01000065
Betaproteobacteria
Silvimonas sp. JCM 19000 [BBFD]
12449
12525
+
Gln
TTG
[ENA]
¡û
>W1610576362
LAQT01000037
Betaproteobacteria
Amantichitinum ursilacus [LAQT]
74152
74228
+
Gln
TTG
[ENA]
¡û
>W1610723347
LMDI01000011
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
58426
58350
-
Gln
TTG
[ENA]
¡û
>W1610723902
LMDS01000004
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
1489325
1489401
+
Gln
TTG
[ENA]
¡û
>W1610724204
LMDY01000012
Betaproteobacteria
Methylibium sp. Root1272 [LMDY]
76153
76229
+
Gln
TTG
[ENA]
¡û
>W1610753882
LNEY01000010
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
20020
20096
+
Gln
TTG
[ENA]
¡û
>W1710046027
BBFD01000065
Betaproteobacteria
Silvimonas sp. JCM 19000 [BBFD]
12449
12525
+
Gln
TTG
[ENA]
¡û
>W1710570512
FOVE01000024
Betaproteobacteria
Formivibrio citricus [FOVE]
28581
28505
-
Gln
TTG
[ENA]
¡û
>W1710605596
FWXD01000015
Betaproteobacteria
Andreprevotia lacus DSM 23236 [FWXD]
73658
73582
-
Gln
TTG
[ENA]
¡û
>W1710694851
LAQT01000037
Betaproteobacteria
Amantichitinum ursilacus [LAQT]
74152
74228
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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