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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282093 (84 seq.)
>W1711387163
MEGJ01000004
Gammaproteobacteria
Rhodanobacter sp. SCN 69-32 [MEGJ]
58956
59032
+
Asp
GTC
[ENA]
¡û
>W1711387167
MEGJ01000004
Gammaproteobacteria
Rhodanobacter sp. SCN 69-32 [MEGJ]
76026
75950
-
Asp
GTC
[ENA]
¡û
>W1711506096
MKWC01000008
Gammaproteobacteria
Rhodanobacter sp. 68-29 [MKWC]
159187
159263
+
Asp
GTC
[ENA]
¡û
>W1711506100
MKWC01000008
Gammaproteobacteria
Rhodanobacter sp. 68-29 [MKWC]
176257
176181
-
Asp
GTC
[ENA]
¡û
>W1711751258
MUNP01000046
Gammaproteobacteria
Rhodanobacter sp. C06 [MUNP]
110815
110891
+
Asp
GTC
[ENA]
¡û
>W1711751261
MUNP01000046
Gammaproteobacteria
Rhodanobacter sp. C06 [MUNP]
124346
124270
-
Asp
GTC
[ENA]
¡û
>W1711751544
MUNV01000018
Gammaproteobacteria
Rhodanobacter sp. B04 [MUNV]
77732
77656
-
Asp
GTC
[ENA]
¡û
>C171063387
CP017480
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 LJ96 [CP017480]
3535933
3535857
-
Asp
GTC
-
¡û
>W131046173
AMSF01000016
Gammaproteobacteria
Dyella ginsengisoli LA-4 [AMSF]
159184
159260
+
Asp
GTC
[ENA]
¡û
>W131046184
AMSF01000016
Gammaproteobacteria
Dyella ginsengisoli LA-4 [AMSF]
171264
171188
-
Asp
GTC
[ENA]
¡û
>W131226632
AUEN01000001
Gammaproteobacteria
Lysobacter sp. URHA0019 [AUEN]
270806
270882
+
Asp
GTC
[ENA]
¡û
>W131226633
AUEN01000001
Gammaproteobacteria
Lysobacter sp. URHA0019 [AUEN]
270983
271059
+
Asp
GTC
[ENA]
¡û
>WENV180017633
FSXK01001892
[FSXK] metagenome; soil
4336
4260
-
Asp
GTC
[ENA]
¢þ
>WENV180019161
FTBI01000799
[FTBI] metagenome; soil
4420
4344
-
Asp
GTC
[ENA]
¢þ
>WENV180028675
FTJE01742182
[FTJE] metagenome; soil
217
141
-
Asp
GTC
[ENA]
¢þ
>WENV181308366
OFIS01007609
[OFIS] sludge metagenome; sludge
79
3
-
Asp
GTC
[ENA]
¢þ
>WENV181401416
OFTX01000125
[OFTX] sludge metagenome; sludge
47284
47360
+
Asp
GTC
[ENA]
¢þ
>WENV181402137
OFTY01000152
[OFTY] sludge metagenome; sludge
19852
19928
+
Asp
GTC
[ENA]
¢þ
>WENV181402146
OFTY01000152
[OFTY] sludge metagenome; sludge
34350
34274
-
Asp
GTC
[ENA]
¢þ
>W141274345
JAAN01000014
Gammaproteobacteria
Luteimonas huabeiensis HB2 [JAAN]
449990
450066
+
Asp
GTC
[ENA]
¡û
>WENV183697512
OUNK010000066
[OUNK] metagenome; soil
30018
30094
+
Asp
GTC
[ENA]
¢þ
>WENV183698071
OUNK011064145
[OUNK] metagenome; soil
203
279
+
Asp
GTC
[ENA]
¢þ
>WENV170707193
LNAP01014992
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1665
1741
+
Asp
GTC
[ENA]
¢þ
>C181200075
CP031413
Gammaproteobacteria
Lysobacter sp. TY2-98 [CP031413]
1810155
1810079
-
Asp
GTC
-
¡û
>C181200076
CP031413
Gammaproteobacteria
Lysobacter sp. TY2-98 [CP031413]
1809977
1809901
-
Asp
GTC
-
¡û
>C191138607
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
3167070
3166994
-
Asp
GTC
-
¡û
>C191138627
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
1396661
1396585
-
Asp
GTC
-
¡û
>C191186041
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
1843650
1843574
-
Asp
GTC
-
¡û
>W141564917
JIBD01000005
Gammaproteobacteria
Dyella japonica UNC79MFTsu3.2 [JIBD]
62395
62471
+
Asp
GTC
[ENA]
¡û
>W141564923
JIBD01000005
Gammaproteobacteria
Dyella japonica UNC79MFTsu3.2 [JIBD]
75868
75792
-
Asp
GTC
[ENA]
¡û
>W141820722
JQNB01000001
Gammaproteobacteria
Luteibacter sp. 9135 [JQNB]
2837927
2837851
-
Asp
GTC
[ENA]
¡û
>W141820801
JQND01000001
Gammaproteobacteria
Luteibacter sp. 9145 [JQND]
2674733
2674809
+
Asp
GTC
[ENA]
¡û
>W141821270
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
4292559
4292483
-
Asp
GTC
[ENA]
¡û
>W1910896585
NFZS01000001
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
2028438
2028514
+
Asp
GTC
[ENA]
¡û
>W1911199797
NRDP01000012
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
51303
51379
+
Asp
GTC
[ENA]
¡û
>W1911199800
NRDP01000012
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
64231
64155
-
Asp
GTC
[ENA]
¡û
>W1810477591
QAOX01000007
Gammaproteobacteria
Luteibacter sp. OK325 [QAOX]
133169
133093
-
Asp
GTC
[ENA]
¡û
>W1810485581
QAVX01000011
Gammaproteobacteria
Dyella sp. C11 [QAVX]
89896
89972
+
Asp
GTC
[ENA]
¡û
>W1810485586
QAVX01000011
Gammaproteobacteria
Dyella sp. C11 [QAVX]
102774
102698
-
Asp
GTC
[ENA]
¡û
>W1810597202
QGHC01000001
Gammaproteobacteria
Fulvimonas soli DSM 14263 [QGHC]
377930
378006
+
Asp
GTC
[ENA]
¡û
>W1810597205
QGHC01000001
Gammaproteobacteria
Fulvimonas soli DSM 14263 [QGHC]
401817
401741
-
Asp
GTC
[ENA]
¡û
>W1810628316
QICJ01000001
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
143344
143420
+
Asp
GTC
[ENA]
¡û
>W1810628329
QICJ01000001
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
156277
156201
-
Asp
GTC
[ENA]
¡û
>W1810629407
QIRF01000001
Gammaproteobacteria
Dyella sp. C9 [QIRF]
506522
506598
+
Asp
GTC
[ENA]
¡û
>W1810629410
QIRF01000001
Gammaproteobacteria
Dyella sp. C9 [QIRF]
519810
519734
-
Asp
GTC
[ENA]
¡û
>W1810762582
QQAH01000001
Gammaproteobacteria
Dyella tabacisoli L4-6 [QQAH]
390566
390642
+
Asp
GTC
[ENA]
¡û
>W1810762593
QQAH01000001
Gammaproteobacteria
Dyella tabacisoli L4-6 [QQAH]
403133
403057
-
Asp
GTC
[ENA]
¡û
>W1810783277
QQSY01000007
Gammaproteobacteria
Dyella solisilvae DHG54 [QQSY]
72324
72400
+
Asp
GTC
[ENA]
¡û
>W1810783280
QQSY01000007
Gammaproteobacteria
Dyella solisilvae DHG54 [QQSY]
85159
85083
-
Asp
GTC
[ENA]
¡û
>W1810785097
QRBE01000008
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
57351
57427
+
Asp
GTC
[ENA]
¡û
>W1810785109
QRBE01000008
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
72690
72614
-
Asp
GTC
[ENA]
¡û
>W1810785124
QRBF01000001
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
884152
884228
+
Asp
GTC
[ENA]
¡û
>W1810785137
QRBF01000001
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
897230
897154
-
Asp
GTC
[ENA]
¡û
>C151023724
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
2339806
2339882
+
Asp
GTC
[Ensembl]
¡û
>C151023754
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
2352698
2352622
-
Asp
GTC
[Ensembl]
¡û
>C151039088
CP008884
Gammaproteobacteria
Dyella japonica A8 [CP008884]
3386871
3386947
+
Asp
GTC
[Ensembl]
¡û
>C151039111
CP008884
Gammaproteobacteria
Dyella japonica A8 [CP008884]
3399866
3399790
-
Asp
GTC
[Ensembl]
¡û
>W1511305065
JPLA01000024
Gammaproteobacteria
Dyella japonica DSM 16301 [JPLA]
5634
5558
-
Asp
GTC
[ENA]
¡û
>W1511305100
JPLB01000017
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 [JPLB]
113037
112961
-
Asp
GTC
[ENA]
¡û
>W1511305294
JPLD01000385
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
9821
9745
-
Asp
GTC
[ENA]
¡û
>W1511433926
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
1767337
1767261
-
Asp
GTC
[ENA]
¡û
>W1511547583
JZRB01000023
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
98747
98671
-
Asp
GTC
[ENA]
¡û
>W11172561
AFSN01000013
Gammaproteobacteria
Pseudoxanthomonas spadix BD-a59 [AFSN]
174383
174307
-
Asp
GTC
[ENA]
¡û
>C121005593
CP003093
Gammaproteobacteria
Pseudoxanthomonas spadix BD-a59 [CP003093]
2415404
2415328
-
Asp
GTC
[Ensembl]
¡û
>C161078231
CP014841
Gammaproteobacteria
Dyella thiooxydans ATSB10 [CP014841]
854896
854972
+
Asp
GTC
[Ensembl]
¡û
>C161078260
CP014841
Gammaproteobacteria
Dyella thiooxydans ATSB10 [CP014841]
866978
866902
-
Asp
GTC
[Ensembl]
¡û
>W121113887
ALOY01000159
Gammaproteobacteria
Dyella japonica A8 [ALOY]
46801
46877
+
Asp
GTC
[ENA]
¡û
>W121113892
ALOY01000166
Gammaproteobacteria
Dyella japonica A8 [ALOY]
5691
5615
-
Asp
GTC
[ENA]
¡û
>W1610616809
LGRQ01001146
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
220
296
+
Asp
GTC
[ENA]
¡û
>W1710515269
FNBR01000001
Gammaproteobacteria
Dyella sp. 333MFSha [FNBR]
1557999
1558075
+
Asp
GTC
[ENA]
¡û
>W1710519807
FNFA01000004
Gammaproteobacteria
Dyella jiangningensis [FNFA]
256998
257074
+
Asp
GTC
[ENA]
¡û
>W1710519811
FNFA01000004
Gammaproteobacteria
Dyella jiangningensis [FNFA]
269931
269855
-
Asp
GTC
[ENA]
¡û
>W1710541181
FNYC01000010
Gammaproteobacteria
Frateuria terrea [FNYC]
4583
4659
+
Asp
GTC
[ENA]
¡û
>W1710545824
FOBU01000003
Gammaproteobacteria
Luteibacter sp. UNCMF331Sha3.1 [FOBU]
76565
76489
-
Asp
GTC
[ENA]
¡û
>W1710548696
FODZ01000003
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
124682
124758
+
Asp
GTC
[ENA]
¡û
>W1710555190
FOJE01000001
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
1454323
1454399
+
Asp
GTC
[ENA]
¡û
>W1710560328
FONH01000007
Gammaproteobacteria
Dyella marensis [FONH]
105715
105791
+
Asp
GTC
[ENA]
¡û
>W1710560332
FONH01000007
Gammaproteobacteria
Dyella marensis [FONH]
119188
119112
-
Asp
GTC
[ENA]
¡û
>W1710573415
FOXL01000011
Gammaproteobacteria
Frateuria terrea [FOXL]
4583
4659
+
Asp
GTC
[ENA]
¡û
>W1710575682
FOZI01000005
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
380564
380640
+
Asp
GTC
[ENA]
¡û
>W1710575686
FOZI01000005
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
393715
393639
-
Asp
GTC
[ENA]
¡û
>W1710579669
FPIS01000001
Gammaproteobacteria
Luteibacter sp. UNCMF366Tsu5.1 [FPIS]
211712
211636
-
Asp
GTC
[ENA]
¡û
>W1710603062
FUYT01000007
Gammaproteobacteria
Luteibacter sp. 22Crub2.1 [FUYT]
145630
145706
+
Asp
GTC
[ENA]
¡û
>W1710742148
LGRQ01001146
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
220
296
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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