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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282120 (106 seq.)
>W1710872254
LMLV01000030
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
351396
351321
-
Arg
TCT
[ENA]
¡û
>W1710879579
LMRU01000005
Bacillota
Bacillus sp. Leaf406 [LMRU]
227461
227536
+
Arg
TCT
[ENA]
¡û
>W1710881798
LMTI01000002
Bacillota
Bacillus sp. FJAT-27445 [LMTI]
494356
494280
-
Arg
TCT
[ENA]
¡û
>W1710882641
LMVB01000001
Bacillota
Paenibacillus sp. FJAT-29882 [LMVB]
614215
614290
+
Arg
TCT
[ENA]
¡û
>W1710885424
LMXG01000001
Bacillota
Bacillus sp. FJAT-28573 [LMXG]
614215
614290
+
Arg
TCT
[ENA]
¡û
>W1710891060
LNCN01000003
Bacillota
Bacillus pumilus [LNCN]
4806
4881
+
Arg
TCT
[ENA]
¡û
>W1711009978
LQQY01000047
Bacillota
Rossellomorea marisflavi [LQQY]
105466
105391
-
Arg
TCT
[ENA]
¡û
>W1711262258
LYXP01000031
Bacillota
Bacillus pumilus [LYXP]
207099
207024
-
Arg
TCT
[ENA]
¡û
>W1711430370
MIJA01000026
Bacillota
Bacillus pumilus [MIJA]
69330
69255
-
Arg
TCT
[ENA]
¡û
>W1711509397
MKZN01000003
Bacillota
Bacillus pumilus [MKZN]
264469
264544
+
Arg
TCT
[ENA]
¡û
>C171050816
CP016784
Bacillota
Bacillus pumilus PDSLzg-1 [CP016784]
658706
658781
+
Arg
TCT
-
¡û
>WENV180101336
OAOU01030757
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
351
426
+
Arg
TCT
[ENA]
¢þ
>W08003022
ABFU01000049
Bacillota
Bacillus coahuilensis m4-4 [ABFU]
22238
22316
+
Arg
TCT
[ENA]
¡û
>W141091479
AUYR01000067
Bacillota
Planococcus glaciei CHR43 [AUYR]
25822
25897
+
Arg
TCT
[ENA]
¡û
>W08010967
ABRX01000006
Bacillota
Bacillus pumilus ATCC 7061 [ABRX]
201387
201312
-
Arg
TCT
[ENA]
¡û
>W141193377
AYSD01000009
Bacillota
Bacillus cihuensis FJAT-14515 [AYSD]
73713
73636
-
Arg
TCT
[ENA]
¡û
>C08002097
CP000813
Bacillota
Bacillus pumilus SAFR-032 [CP000813]
2499461
2499386
-
Arg
TCT
[Ensembl]
¡û
>W141263803
CCDN010000001
Bacillota
Rossellomorea vietnamensis [CCDN]
611804
611880
+
Arg
TCT
[ENA]
¡û
>W141289378
JAQV01000024
Bacillota
Bacillus sp. SJS [JAQV]
25135
25057
-
Arg
TCT
[ENA]
¡û
>C181021434
CP016808
Bacillota
Paenibacillus sp. BIHB 4019 [CP016808]
7187523
7187598
+
Arg
TCT
-
¡û
>C181224410
LT906438
Bacillota
Bacillus pumilus NCTC10337 [LT906438]
2531459
2531384
-
Arg
TCT
-
¡û
>C191050280
CP027034
Bacillota
Bacillus pumilus 150a [CP027034]
2514761
2514686
-
Arg
TCT
-
¡û
>C191050918
CP027116
Bacillota
Bacillus pumilus 145 [CP027116]
2675284
2675209
-
Arg
TCT
-
¡û
>C191064144
CP029464
Bacillota
Bacillus pumilus ZB201701 [CP029464]
1689179
1689104
-
Arg
TCT
-
¡û
>W141789831
JOTP01000009
Bacillota
Bacillus zhangzhouensis DW5-4 [JOTP]
7427
7502
+
Arg
TCT
[ENA]
¡û
>W141789832
JOTP01000009
Bacillota
Bacillus zhangzhouensis DW5-4 [JOTP]
9533
9608
+
Arg
TCT
[ENA]
¡û
>W1910225532
FMSO01000020
Bacillota
Bacillus massiliglaciei Marseille-P2600 [FMSO]
275778
275703
-
Arg
TCT
[ENA]
¡û
>W1910227949
FNMN01000002
Bacillota
Bacillus sp. ES3 [FNMN]
850314
850390
+
Arg
TCT
[ENA]
¡û
>W1910437714
FVYY01000009
Bacillota
Rossellomorea marisflavi Marseille-P794 [FVYY]
2158783
2158708
-
Arg
TCT
[ENA]
¡û
>W1910810657
MULS01000002
Bacillota
Bacillus pumilus 104 [MULS]
232394
232469
+
Arg
TCT
[ENA]
¡û
>W1910827195
MWSH01000008
Bacillota
Bacillus sp. DSM 27956 [MWSH]
60213
60137
-
Arg
TCT
[ENA]
¡û
>W1910930236
NISN01000003
Bacillota
Bacillus sp. FJAT-45037 [NISN]
1682647
1682572
-
Arg
TCT
[ENA]
¡û
>W1910941110
NJAZ01000016
Bacillota
Bacillus sp. FJAT-42315 [NJAZ]
61140
61215
+
Arg
TCT
[ENA]
¡û
>W1910989249
NKQE01000002
Bacillota
Bacillaceae bacterium SAOS 7 [NKQE]
142217
142292
+
Arg
TCT
[ENA]
¡û
>W1910993864
NKXN01000052
Bacillota
Bacillaceae bacterium SAS-127 [NKXN]
11769
11694
-
Arg
TCT
[ENA]
¡û
>W1911146333
NPDC01000021
Bacillota
Bacillus sp. 7788 [NPDC]
63023
62948
-
Arg
TCT
[ENA]
¡û
>W1911299562
NTUP01000074
Bacillota
Bacillus sp. AFS015802 [NTUP]
66570
66646
+
Arg
TCT
[ENA]
¡û
>W1911634087
PVME01000001
Bacillota
Bacillus sp. LLTC93 [PVME]
788995
788920
-
Arg
TCT
[ENA]
¡û
>W1911634423
PVRB01000008
Bacillota
Bacillus sp. LNXM65 [PVRB]
127209
127134
-
Arg
TCT
[ENA]
¡û
>W1911634465
PVRD01000005
Bacillota
Bacillus sp. LNXM10 [PVRD]
236715
236790
+
Arg
TCT
[ENA]
¡û
>W1911634593
PVRG01000004
Bacillota
Bacillus sp. CJCL2 [PVRG]
385150
385075
-
Arg
TCT
[ENA]
¡û
>W1911638575
PVWX01000001
Bacillota
Bacillus sp. LNXM12-1 [PVWX]
1144099
1144024
-
Arg
TCT
[ENA]
¡û
>W1911638642
PVWY01000001
Bacillota
Bacillus sp. LNXM12-2 [PVWY]
1599580
1599505
-
Arg
TCT
[ENA]
¡û
>W1911748393
QWEG01000006
Bacillota
Neobacillus notoginsengisoli JCM 30743 [QWEG]
112263
112189
-
Arg
TCT
[ENA]
¡û
>W1810057733
PDIY01000001
Bacillota
Bacillus sp. es.034 [PDIY]
2245301
2245377
+
Arg
TCT
[ENA]
¡û
>W1810062502
PDOD01000002
Bacillota
Salipaludibacillus keqinensis KQ-12 [PDOD]
767480
767404
-
Arg
TCT
[ENA]
¡û
>W1810103865
PGVA01000009
Bacillota
Bacillus canaveralius M4.6 [PGVA]
56124
56050
-
Arg
TCT
[ENA]
¡û
>W1810104015
PGVC01000042
Bacillota
Bacillus sp. V33-4 [PGVC]
35544
35618
+
Arg
TCT
[ENA]
¡û
>W1810104124
PGVD01000054
Bacillota
Bacillus canaveralius ATCC 29669 [PGVD]
56083
56009
-
Arg
TCT
[ENA]
¡û
>W1810315928
PTXV01000001
Bacillota
Bacillus pumilus Ha06YP001 [PTXV]
234607
234682
+
Arg
TCT
[ENA]
¡û
>W1810361249
PVQK01000001
Bacillota
Bacillus sp. NMCN6 [PVQK]
1556463
1556388
-
Arg
TCT
[ENA]
¡û
>W1810361319
PVQL01000001
Bacillota
Bacillus sp. NMCN1 [PVQL]
1629424
1629349
-
Arg
TCT
[ENA]
¡û
>W1810361871
PVQT01000002
Bacillota
Bacillus pumilus LLTC96 [PVQT]
235596
235671
+
Arg
TCT
[ENA]
¡û
>W1810361939
PVQU01000004
Bacillota
Bacillus pumilus NMSW10 [PVQU]
100533
100608
+
Arg
TCT
[ENA]
¡û
>W1810361992
PVQV01000001
Bacillota
Bacillus pumilus LDZX38 [PVQV]
278250
278325
+
Arg
TCT
[ENA]
¡û
>W1810362063
PVQW01000001
Bacillota
Bacillus pumilus LNXM70 [PVQW]
234827
234902
+
Arg
TCT
[ENA]
¡û
>W1810362123
PVQX01000001
Bacillota
Bacillus pumilus LNTW65 [PVQX]
1659339
1659264
-
Arg
TCT
[ENA]
¡û
>W1810362175
PVQY01000001
Bacillota
Bacillus sp. GBSC66 [PVQY]
233811
233886
+
Arg
TCT
[ENA]
¡û
>W1810362242
PVQZ01000002
Bacillota
Bacillus sp. NMCC46 [PVQZ]
522050
521975
-
Arg
TCT
[ENA]
¡û
>W1810362291
PVRA01000004
Bacillota
Bacillus sp. NMCC4 [PVRA]
174658
174733
+
Arg
TCT
[ENA]
¡û
>W1810362373
PVRC01000004
Bacillota
Bacillus sp. GBSW2 [PVRC]
274200
274125
-
Arg
TCT
[ENA]
¡û
>W1810362453
PVRF01000001
Bacillota
Bacillus sp. GBSW19 [PVRF]
1598722
1598647
-
Arg
TCT
[ENA]
¡û
>W1810362533
PVRH01000005
Bacillota
Bacillus sp. NMTD17 [PVRH]
128628
128703
+
Arg
TCT
[ENA]
¡û
>W1810362586
PVRI01000002
Bacillota
Bacillus sp. YBWC18 [PVRI]
385244
385169
-
Arg
TCT
[ENA]
¡û
>W1810367754
PVYY01000008
Bacillota
Bacillus sp. V-88 [PVYY]
60213
60137
-
Arg
TCT
[ENA]
¡û
>W1810576429
QENN01000001
Bacillota
Bacillus pumilus 124 [QENN]
482911
482836
-
Arg
TCT
[ENA]
¡û
>W1810657822
QJIZ01000003
Bacillota
Bacillus pumilus MG52 [QJIZ]
47939
48014
+
Arg
TCT
[ENA]
¡û
>W1810658211
QJJE01000001
Bacillota
Bacillus pumilus MG84 [QJJE]
357685
357610
-
Arg
TCT
[ENA]
¡û
>W1810697648
QLVI01000017
Bacillota
Bacillus pumilus EZ-C07 [QLVI]
55055
54980
-
Arg
TCT
[ENA]
¡û
>W1810783074
QQRT01000034
Bacillota
Planococcus salinarum ISL-16 [QQRT]
9199
9274
+
Arg
TCT
[ENA]
¡û
>W1511502127
JXCL01000013
Bacillota
Bacillus pumilus B4127 [JXCL]
47820
47895
+
Arg
TCT
[ENA]
¡û
>W1511509955
JXRP01000019
Bacillota
Jeotgalibacillus soli Cunha et al. 2012 P9 [JXRP]
496122
496046
-
Arg
TCT
[ENA]
¡û
>W1511510096
JXRR01000017
Bacillota
Jeotgalibacillus campisalis SF-57 [JXRR]
323662
323586
-
Arg
TCT
[ENA]
¡û
>W1511577195
LAQO01000024
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
52424
52499
+
Arg
TCT
[ENA]
¡û
>W1511642850
LDWH01000006
Bacillota
Rossellomorea marisflavi LK16 [LDWH]
554822
554747
-
Arg
TCT
[ENA]
¡û
>W1511643030
LDWJ01000005
Bacillota
Rossellomorea marisflavi LK19 [LDWJ]
255167
255092
-
Arg
TCT
[ENA]
¡û
>W1511643452
LDWO01000006
Bacillota
Rossellomorea marisflavi LK26 [LDWO]
121847
121772
-
Arg
TCT
[ENA]
¡û
>W1511680835
LFGZ01000002
Bacillota
Bacillus pumilus RI06-95 [LFGZ]
237170
237245
+
Arg
TCT
[ENA]
¡û
>W1511693576
LFZW01000001
Bacillota
Peribacillus loiseleuriae FJAT-27997 [LFZW]
3835400
3835325
-
Arg
TCT
[ENA]
¡û
>W1511693759
LGAF01000002
Bacillota
Planococcus glaciei UCD-HAM [LGAF]
151329
151404
+
Arg
TCT
[ENA]
¡û
>W1511706341
LGUE01000001
Bacillota
Rossellomorea marisflavi JCM 11544 [LGUE]
231656
231731
+
Arg
TCT
[ENA]
¡û
>C161030999
CP011007
Bacillota
Bacillus pumilus SH-B9 [CP011007]
2505099
2505024
-
Arg
TCT
-
¡û
>W1610073074
BCVQ01000018
Bacillota
Rossellomorea vietnamensis NBRC 101237 [BCVQ]
61864
61788
-
Arg
TCT
[ENA]
¡û
>W1610594746
LDYF01000036
Bacillota
Bacillus coahuilensis m2-6 [LDYF]
84255
84177
-
Arg
TCT
[ENA]
¡û
>W1610594823
LDYG01000032
Bacillota
Bacillus coahuilensis p1.1.43 [LDYG]
123587
123509
-
Arg
TCT
[ENA]
¡û
>W1610620395
LHCE01000015
Bacillota
Bacillus pumilus [LHCE]
127270
127195
-
Arg
TCT
[ENA]
¡û
>W1610638634
LIXZ01000002
Bacillota
Rossellomorea vietnamensis [LIXZ]
132877
132801
-
Arg
TCT
[ENA]
¡û
>W1610734600
LMLV01000030
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
351396
351321
-
Arg
TCT
[ENA]
¡û
>W1610741925
LMRU01000005
Bacillota
Bacillus sp. Leaf406 [LMRU]
227461
227536
+
Arg
TCT
[ENA]
¡û
>W1610743833
LMTI01000002
Bacillota
Bacillus sp. FJAT-27445 [LMTI]
494356
494280
-
Arg
TCT
[ENA]
¡û
>W1610744567
LMVB01000001
Bacillota
Paenibacillus sp. FJAT-29882 [LMVB]
614215
614290
+
Arg
TCT
[ENA]
¡û
>W1610747350
LMXG01000001
Bacillota
Bacillus sp. FJAT-28573 [LMXG]
614215
614290
+
Arg
TCT
[ENA]
¡û
>W1610751456
LNCN01000003
Bacillota
Bacillus pumilus [LNCN]
4806
4881
+
Arg
TCT
[ENA]
¡û
>W1610858498
LQQY01000047
Bacillota
Rossellomorea marisflavi [LQQY]
105466
105391
-
Arg
TCT
[ENA]
¡û
>W1611024181
LYXP01000031
Bacillota
Bacillus pumilus [LYXP]
207099
207024
-
Arg
TCT
[ENA]
¡û
>W1710070192
BCVQ01000018
Bacillota
Rossellomorea vietnamensis NBRC 101237 [BCVQ]
61864
61788
-
Arg
TCT
[ENA]
¡û
>W1710517168
FNDC01000016
Bacillota
Planococcus glaciei [FNDC]
33591
33666
+
Arg
TCT
[ENA]
¡û
>W1710556146
FOJZ01000007
Bacillota
Bacillus sp. UNCCL13 [FOJZ]
59835
59758
-
Arg
TCT
[ENA]
¡û
>W1710558606
FOMA01000004
Bacillota
Bacillus sp. OV322 [FOMA]
306812
306736
-
Arg
TCT
[ENA]
¡û
>W1710560590
FONN01000003
Bacillota
Paenibacillus algorifonticola [FONN]
107230
107305
+
Arg
TCT
[ENA]
¡û
>W1710574374
FOYF01000002
Bacillota
Bacillus sp. cl95 [FOYF]
222215
222292
+
Arg
TCT
[ENA]
¡û
>W1710604688
FVZH01000008
Bacillota
Bacillus sp. V-88 [FVZH]
60213
60137
-
Arg
TCT
[ENA]
¡û
>W1710714198
LDYF01000036
Bacillota
Bacillus coahuilensis m2-6 [LDYF]
84255
84177
-
Arg
TCT
[ENA]
¡û
>W1710714275
LDYG01000032
Bacillota
Bacillus coahuilensis p1.1.43 [LDYG]
123587
123509
-
Arg
TCT
[ENA]
¡û
>W1710746732
LHCE01000015
Bacillota
Bacillus pumilus [LHCE]
127270
127195
-
Arg
TCT
[ENA]
¡û
>W1710774465
LIXZ01000002
Bacillota
Rossellomorea vietnamensis [LIXZ]
132877
132801
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK