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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282238 (25 seq.)
>W1710866457
LMHM01000011
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
603528
603452
-
Arg
TCT
[ENA]
¡û
>W131226627
AUEN01000001
Gammaproteobacteria
Lysobacter sp. URHA0019 [AUEN]
263131
263207
+
Arg
TCT
[ENA]
¡û
>W131231904
AUIV01000005
Gammaproteobacteria
Thermomonas fusca DSM 15424 [AUIV]
25611
25535
-
Arg
TCT
[ENA]
¡û
>W131244863
CAQP01000028
Gammaproteobacteria
Lysobacter antibioticus HS124 [CAQP]
9170
9246
+
Arg
TCT
[ENA]
¡û
>W1711711510
MTAY01000048
Gammaproteobacteria
Lysobacter enzymogenes [MTAY]
71509
71433
-
Arg
TCT
[ENA]
¡û
>WENV182401766
OIER01010860
[OIER] human gut metagenome; human gut
859
935
+
Arg
TCT
[ENA]
¢þ
>W141282835
JAJA01000018
Gammaproteobacteria
Lysobacter capsici AZ78 [JAJA]
32394
32470
+
Arg
TCT
[ENA]
¡û
>WENV182941702
OKVG01005491
[OKVG] human gut metagenome; human gut
2139
2215
+
Arg
TCT
[ENA]
¢þ
>WENV182944225
OKVI01008082
[OKVI] human gut metagenome; human gut
1117
1193
+
Arg
TCT
[ENA]
¢þ
>WENV170009848
APMI01003864
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
20297
20373
+
Arg
TCT
[ENA]
¢þ
>WENV170010377
APMI01015377
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
12378
12302
-
Arg
TCT
[ENA]
¢þ
>WENV170010433
APMI01017069
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
893
817
-
Arg
TCT
[ENA]
¢þ
>C181000999
AP014940
Gammaproteobacteria
Lysobacter enzymogenes M497-1 [AP014940]
1985591
1985667
+
Arg
TCT
-
¡û
>C181081793
CP023465
Gammaproteobacteria
Lysobacter capsici KNU-14 [CP023465]
2000153
2000229
+
Arg
TCT
-
¡û
>C181200070
CP031413
Gammaproteobacteria
Lysobacter sp. TY2-98 [CP031413]
1817900
1817824
-
Arg
TCT
-
¡û
>C191181063
CP040656
Gammaproteobacteria
Lysobacter enzymogenes YC36 [CP040656]
4015625
4015549
-
Arg
TCT
-
¡û
>W1911162543
NPZB01000002
Gammaproteobacteria
Lysobacter silvestris AM20-91 [NPZB]
1105109
1105033
-
Arg
TCT
[ENA]
¡û
>W1810692791
QLKV01000006
Gammaproteobacteria
Thermomonas haemolytica HAMBI_2467 [QLKV]
141867
141943
+
Arg
TCT
[ENA]
¡û
>W1511594999
LBMI01000004
Gammaproteobacteria
Lysobacter capsici X2-3 [LBMI]
226290
226366
+
Arg
TCT
[ENA]
¡û
>C161031591
CP011130
Gammaproteobacteria
Lysobacter capsici 55 [CP011130]
2006694
2006770
+
Arg
TCT
[Ensembl]
¡û
>C161052045
CP013140
Gammaproteobacteria
Lysobacter enzymogenes C3 [CP013140]
3823415
3823339
-
Arg
TCT
[Ensembl]
¡û
>W1610728803
LMHM01000011
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
603528
603452
-
Arg
TCT
[ENA]
¡û
>W1710529749
FNOG01000003
Gammaproteobacteria
Lysobacter enzymogenes [FNOG]
522770
522846
+
Arg
TCT
[ENA]
¡û
>W1710531703
FNPT01000001
Gammaproteobacteria
Lysobacter sp. yr284 [FNPT]
920523
920447
-
Arg
TCT
[ENA]
¡û
>W1710582983
FQUK01000025
Gammaproteobacteria
Thermomonas hydrothermalis [FQUK]
17372
17448
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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