This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282325 (78 seq.)
>W131050071
AMWC01001796
Alphaproteobacteria
Donghicola sp. S598 [AMWC]
650
726
+
Asp
GTC
[ENA]
¡û
>W131183074
ARRM01000075
Alphaproteobacteria
Salipiger mucosus DSM 16094 [ARRM]
22311
22387
+
Asp
GTC
[ENA]
¡û
>W131183075
ARRM01000075
Alphaproteobacteria
Salipiger mucosus DSM 16094 [ARRM]
22424
22500
+
Asp
GTC
[ENA]
¡û
>C171032457
CP014595
Alphaproteobacteria
Yangia sp. CCB-MM3
524964
524888
-
Asp
GTC
-
¡û
>C171032458
CP014595
Alphaproteobacteria
Yangia sp. CCB-MM3
524854
524778
-
Asp
GTC
-
¡û
>C171033699
CP014796
Alphaproteobacteria
Thiobacimonas profunda JLT2016 (CP014796)
4024123
4024047
-
Asp
GTC
-
¡û
>C171033700
CP014796
Alphaproteobacteria
Thiobacimonas profunda JLT2016 (CP014796)
4024012
4023936
-
Asp
GTC
-
¡û
>C171035437
CP015093
Alphaproteobacteria
Pelagibaca abyssi JLT2014 (CP015093)
3365120
3365196
+
Asp
GTC
-
¡û
>C171035438
CP015093
Alphaproteobacteria
Pelagibaca abyssi JLT2014 (CP015093)
3365230
3365306
+
Asp
GTC
-
¡û
>w018833
AATQ01000042
Alphaproteobacteria
Roseovarius sp. HTCC2601 [AATQ]
14764
14840
+
Asp
GTC
[ENA]
¡û
>W141064449
APVH01000076
Alphaproteobacteria
Salipiger mucosus DSM 16094 [APVH]
22311
22387
+
Asp
GTC
[ENA]
¡û
>W141064450
APVH01000076
Alphaproteobacteria
Salipiger mucosus DSM 16094 [APVH]
22424
22500
+
Asp
GTC
[ENA]
¡û
>W141065731
AQQW01000002
Alphaproteobacteria
Roseivivax sp. 22II-s10s [AQQW]
368128
368204
+
Asp
GTC
[ENA]
¡û
>W141065763
AQQY01000001
Alphaproteobacteria
Actibacterium sp. 22II-S11-z10 [AQQY]
261901
261977
+
Asp
GTC
[ENA]
¡û
>W141065764
AQQY01000001
Alphaproteobacteria
Actibacterium sp. 22II-S11-z10 [AQQY]
262005
262081
+
Asp
GTC
[ENA]
¡û
>WENV182547742
OJBT01001806
[OJBT] seawater metagenome; Sea water
1304
1380
+
Asp
GTC
[ENA]
¢þ
>WENV182549373
OJBY01000463
[OJBY] seawater metagenome; Sea water
20401
20325
-
Asp
GTC
[ENA]
¢þ
>WENV182549805
OJBZ01000050
[OJBZ] seawater metagenome; Sea water
43977
44053
+
Asp
GTC
[ENA]
¢þ
>WENV182562586
OJDZ01014446
[OJDZ] seawater metagenome; Sea water
108
32
-
Asp
GTC
[ENA]
¢þ
>WENV182565119
OJEG01002645
[OJEG] seawater metagenome; Sea water
1213
1287
+
Asp
GTC
[ENA]
¢þ
>WENV182566868
OJEM01018198
[OJEM] seawater metagenome; Sea water
122
46
-
Asp
GTC
[ENA]
¢þ
>WENV182568937
OJEX01004607
[OJEX] seawater metagenome; Sea water
822
746
-
Asp
GTC
[ENA]
¢þ
>WENV183057482
OLHL01003592
[OLHL] seawater metagenome; Sea water
1373
1297
-
Asp
GTC
[ENA]
¢þ
>WENV183628142
OOGM01026628
[OOGM] marine metagenome; sea ice
124
48
-
Asp
GTC
[ENA]
¢þ
>WENV183704770
PDWI01000619
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
49536
49460
-
Asp
GTC
[ENA]
¢þ
>WENV183716529
PDWJ01000037
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
49536
49460
-
Asp
GTC
[ENA]
¢þ
>WENV183720581
PDWJ01038213
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3697
3621
-
Asp
GTC
[ENA]
¢þ
>WENV183720762
PDWJ01044382
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
21
97
+
Asp
GTC
[ENA]
¢þ
>WENV183720763
PDWJ01044382
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
186
262
+
Asp
GTC
[ENA]
¢þ
>WENV170635328
JDSF01003144
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
106
30
-
Asp
GTC
[ENA]
¢þ
>WENV170672446
LAZR01000169
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
39798
39874
+
Asp
GTC
[ENA]
¢þ
>W141464088
JFKE01000007
Alphaproteobacteria
Actibacterium mucosum KCTC 23349 [JFKE]
15217
15293
+
Asp
GTC
[ENA]
¡û
>W141464089
JFKE01000007
Alphaproteobacteria
Actibacterium mucosum KCTC 23349 [JFKE]
15418
15494
+
Asp
GTC
[ENA]
¡û
>WENV170879655
MDTC01098770
[MDTC] marine metagenome; seawater
35
111
+
Asp
GTC
[ENA]
¢þ
>WENV170937411
MDTG01291407
[MDTG] marine metagenome; seawater
7280
7356
+
Asp
GTC
[ENA]
¢þ
>WENV170937412
MDTG01291407
[MDTG] marine metagenome; seawater
7391
7467
+
Asp
GTC
[ENA]
¢þ
>C181123358
CP025804
Alphaproteobacteria
Sulfitobacter sp. SK012 (CP025804)
2776048
2775972
-
Asp
GTC
-
¡û
>C191083111
CP031946
Alphaproteobacteria
Ruegeria sp. AD91A (CP031946)
1213116
1213040
-
Asp
GTC
-
¡û
>C191182623
CP040753
Alphaproteobacteria
Sulfitobacter sp. BSw21498 (CP040753)
1018349
1018273
-
Asp
GTC
-
¡û
>W141813596
JQEZ01000001
Alphaproteobacteria
Ruegeria halocynthiae [JQEZ]
317430
317354
-
Asp
GTC
[ENA]
¡û
>W141820544
JQMY01000001
Alphaproteobacteria
Oceanicola sp. MCTG156(1a) [JQMY]
1572922
1572998
+
Asp
GTC
[ENA]
¡û
>W141820545
JQMY01000001
Alphaproteobacteria
Oceanicola sp. MCTG156(1a) [JQMY]
1573029
1573105
+
Asp
GTC
[ENA]
¡û
>W1910285299
FREZ01000001
Alphaproteobacteria
Ruegeria sp. Alg231-54 (FREZ)
473578
473502
-
Asp
GTC
[ENA]
¡û
>W1910442904
FWFP01000011
Alphaproteobacteria
Ruegeria meonggei CECT 8411 (FWFP)
21822
21746
-
Asp
GTC
[ENA]
¡û
>W1910443056
FWFT01000001
Alphaproteobacteria
Pseudooctadecabacter jejudonensis CECT 8397 (FWFT)
106618
106694
+
Asp
GTC
[ENA]
¡û
>W1910499032
FXXP01000002
Alphaproteobacteria
Tropicibacter phthalicicus CECT 8649 (FXXP)
548259
548183
-
Asp
GTC
[ENA]
¡û
>W1910499033
FXXP01000002
Alphaproteobacteria
Tropicibacter phthalicicus CECT 8649 (FXXP)
548146
548070
-
Asp
GTC
[ENA]
¡û
>W1911538411
OMOI01000001
Alphaproteobacteria
Aliiroseovarius pelagivivens CECT 8811 (OMOI)
1693116
1693040
-
Asp
GTC
[ENA]
¡û
>W1911538459
OMOJ01000004
Alphaproteobacteria
Primorskyibacter insulae CECT 8871 (OMOJ)
125033
124957
-
Asp
GTC
[ENA]
¡û
>W1911538460
OMOJ01000004
Alphaproteobacteria
Primorskyibacter insulae CECT 8871 (OMOJ)
124820
124744
-
Asp
GTC
[ENA]
¡û
>W1911539015
OMPH01000018
Alphaproteobacteria
Ruegeria sp. AU67 (OMPH)
166990
166914
-
Asp
GTC
[ENA]
¡û
>W1911539297
OMPR01000019
Alphaproteobacteria
Rhodobacteraceae bacterium EL53 (OMPR)
104346
104270
-
Asp
GTC
[ENA]
¡û
>W1911539326
OMPS01000046
Alphaproteobacteria
Ruegeria sp. EL01 (OMPS)
332902
332978
+
Asp
GTC
[ENA]
¡û
>W1911539327
OMPS01000046
Alphaproteobacteria
Ruegeria sp. EL01 (OMPS)
333022
333098
+
Asp
GTC
[ENA]
¡û
>W1911813304
QZEX01000007
Alphaproteobacteria
Rhodobacteraceae bacterium SM1703 (QZEX)
186540
186616
+
Asp
GTC
[ENA]
¡û
>W1810063513
PDUV01000013
Alphaproteobacteria
Rhodobacteraceae bacterium 4F10 (PDUV)
424279
424203
-
Asp
GTC
[ENA]
¡û
>W1810365538
PVUF01000010
Alphaproteobacteria
Ruegeria scottomollicae DSM 25328 (PVUF)
48534
48610
+
Asp
GTC
[ENA]
¡û
>W1810670817
QJSD01000017
Alphaproteobacteria
Primorskyibacter sp. PX7 (QJSD)
20470
20394
-
Asp
GTC
[ENA]
¡û
>W1810670818
QJSD01000017
Alphaproteobacteria
Primorskyibacter sp. PX7 (QJSD)
20325
20249
-
Asp
GTC
[ENA]
¡û
>W1810724982
QOCE01000025
Alphaproteobacteria
Phaeobacter gallaeciensis C3M10 (QOCE)
10830
10906
+
Asp
GTC
[ENA]
¡û
>W1610092511
CYPS01000008
Alphaproteobacteria
Ruegeria atlantica (CYPS)
107856
107932
+
Asp
GTC
[ENA]
¡û
>W1610092571
CYPU01000039
Alphaproteobacteria
Ruegeria atlantica (CYPU)
498597
498673
+
Asp
GTC
[ENA]
¡û
>W1610092726
CYSA01000025
Alphaproteobacteria
Thalassobius gelatinovorus (CYSA)
107738
107662
-
Asp
GTC
[ENA]
¡û
>W1610092727
CYSA01000025
Alphaproteobacteria
Thalassobius gelatinovorus (CYSA)
107627
107551
-
Asp
GTC
[ENA]
¡û
>W1710095766
CYPS01000008
Alphaproteobacteria
Ruegeria atlantica (CYPS)
107856
107932
+
Asp
GTC
[ENA]
¡û
>W1710095826
CYPU01000039
Alphaproteobacteria
Ruegeria atlantica (CYPU)
498597
498673
+
Asp
GTC
[ENA]
¡û
>W1710095981
CYSA01000025
Alphaproteobacteria
Thalassobius gelatinovorus (CYSA)
107738
107662
-
Asp
GTC
[ENA]
¡û
>W1710095982
CYSA01000025
Alphaproteobacteria
Thalassobius gelatinovorus (CYSA)
107627
107551
-
Asp
GTC
[ENA]
¡û
>W1710524973
FNJD01000018
Alphaproteobacteria
Sulfitobacter litoralis (FNJD)
37450
37374
-
Asp
GTC
[ENA]
¡û
>W1710543841
FOAI01000013
Alphaproteobacteria
Roseivivax marinus (FOAI)
91711
91635
-
Asp
GTC
[ENA]
¡û
>W1710551182
FOFW01000005
Alphaproteobacteria
Thalassobius gelatinovorus (FOFW)
106330
106254
-
Asp
GTC
[ENA]
¡û
>W1710551183
FOFW01000005
Alphaproteobacteria
Thalassobius gelatinovorus (FOFW)
106219
106143
-
Asp
GTC
[ENA]
¡û
>W1710552347
FOGU01000001
Alphaproteobacteria
Roseivivax roseus (FOGU)
248757
248681
-
Asp
GTC
[ENA]
¡û
>W1710555864
FOJU01000003
Alphaproteobacteria
Poseidonocella pacifica (FOJU)
228747
228671
-
Asp
GTC
[ENA]
¡û
>W1710558244
FOLR01000007
Alphaproteobacteria
Salipiger nanhaiensis (FOLR)
103423
103499
+
Asp
GTC
[ENA]
¡û
>W1710558245
FOLR01000007
Alphaproteobacteria
Salipiger nanhaiensis (FOLR)
103534
103610
+
Asp
GTC
[ENA]
¡û
>W1710574582
FOYI01000015
Alphaproteobacteria
Poseidonocella sedimentorum (FOYI)
27960
27884
-
Asp
GTC
[ENA]
¡û
>W1710606910
FWYD01000023
Alphaproteobacteria
Pseudooceanicola flagellatus (FWYD)
26708
26632
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK