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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282338 (90 seq.)
>W1710816594
LKLF01000006
Bacillota
Lactococcus lactis subsp. lactis [LKLF]
22509
22582
+
Met
CAT
[ENA]
¡û
>W1710816597
LKLF01000008
Bacillota
Lactococcus lactis subsp. lactis [LKLF]
13509
13434
-
Met
CAT
[ENA]
¡û
>W1710816715
LKLH01000059
Bacillota
Lactococcus lactis subsp. lactis [LKLH]
687
760
+
Met
CAT
[ENA]
¡û
>W1710816763
LKLI01000019
Bacillota
Lactococcus lactis subsp. lactis [LKLI]
2763
2690
-
Met
CAT
[ENA]
¡û
>W1710816791
LKLI01000084
Bacillota
Lactococcus lactis subsp. lactis [LKLI]
260441
260368
-
Met
CAT
[ENA]
¡û
>W1710816797
LKLI01000105
Bacillota
Lactococcus lactis subsp. lactis [LKLI]
4922
4995
+
Met
CAT
[ENA]
¡û
>W1710816813
LKLJ01000005
Bacillota
Lactococcus lactis subsp. lactis [LKLJ]
260443
260370
-
Met
CAT
[ENA]
¡û
>W1710816819
LKLJ01000013
Bacillota
Lactococcus lactis subsp. lactis [LKLJ]
95616
95543
-
Met
CAT
[ENA]
¡û
>W1710816908
LKLK01000021
Bacillota
Lactococcus lactis subsp. lactis [LKLK]
32327
32254
-
Met
CAT
[ENA]
¡û
>W1710816969
LKLL01000033
Bacillota
Lactococcus lactis subsp. lactis [LKLL]
66766
66839
+
Met
CAT
[ENA]
¡û
>W1710817037
LKLN01000021
Bacillota
Lactococcus lactis subsp. lactis [LKLN]
80142
80217
+
Met
CAT
[ENA]
¡û
>W1710817078
LKLO01000006
Bacillota
Lactococcus lactis subsp. lactis [LKLO]
26155
26082
-
Met
CAT
[ENA]
¡û
>W1710817130
LKLO01000072
Bacillota
Lactococcus lactis subsp. lactis [LKLO]
33729
33656
-
Met
CAT
[ENA]
¡û
>W1710817231
LKLQ01000027
Bacillota
Lactococcus lactis subsp. lactis [LKLQ]
84398
84323
-
Met
CAT
[ENA]
¡û
>W1710817244
LKLR01000017
Bacillota
Lactococcus lactis subsp. lactis [LKLR]
1024
951
-
Met
CAT
[ENA]
¡û
>W1710817270
LKLR01000068
Bacillota
Lactococcus lactis subsp. lactis [LKLR]
100
25
-
Met
CAT
[ENA]
¡û
>W1710817296
LKLR01000131
Bacillota
Lactococcus lactis subsp. lactis [LKLR]
4320
4393
+
Met
CAT
[ENA]
¡û
>W1710817482
LKLV01000164
Bacillota
Lactococcus lactis subsp. lactis [LKLV]
439
514
+
Met
CAT
[ENA]
¡û
>W1712017170
NEQN01000001
Bacillota
Lactococcus lactis [NEQN]
251356
251429
+
Met
CAT
[ENA]
¡û
>W131102963
APAV01000022
Bacillota
Lactococcus lactis subsp. lactis YF11 [APAV]
18990
18917
-
Met
CAT
[ENA]
¡û
>W131252348
CBLU010000006
Bacillota
Lactococcus lactis subsp. lactis A12 [CBLU]
262988
262915
-
Met
CAT
[ENA]
¡û
>W131252350
CBLU010000013
Bacillota
Lactococcus lactis subsp. lactis A12 [CBLU]
140605
140678
+
Met
CAT
[ENA]
¡û
>C171042336
CP015895
Bacillota
Lactococcus lactis subsp. lactis 184 [CP015895]
1067248
1067321
+
Met
CAT
-
¡û
>C171042521
CP015898
Bacillota
Lactococcus lactis subsp. lactis C10 [CP015898]
1950486
1950411
-
Met
CAT
-
¡û
>C171042826
CP015903
Bacillota
Lactococcus lactis subsp. lactis UC08 [CP015903]
1640807
1640734
-
Met
CAT
-
¡û
>C171042889
CP015904
Bacillota
Lactococcus lactis subsp. lactis UC11 [CP015904]
1640838
1640765
-
Met
CAT
-
¡û
>C171043135
CP015908
Bacillota
Lactococcus lactis subsp. lactis UL8 [CP015908]
1948439
1948364
-
Met
CAT
-
¡û
>C171128670
LT599049
Bacillota
Lactococcus lactis subsp. lactis A12 [LT599049]
1956888
1956815
-
Met
CAT
-
¡û
>C171128672
LT599049
Bacillota
Lactococcus lactis subsp. lactis A12 [LT599049]
1729955
1729882
-
Met
CAT
-
¡û
>WENV180174080
OAWA01003722
[OAWA] human gut metagenome; faeces
4324
4251
-
Ile2
CAT
[ENA]
¢þ
>WENV180192542
OAXJ01019778
[OAXJ] human gut metagenome; faeces
742
817
+
Ile2
CAT
[ENA]
¢þ
>WENV182517994
OIWP01000067
[OIWP] human gut metagenome; faeces
142168
142095
-
Ile2
CAT
[ENA]
¢þ
>WENV182619573
OJKH01024858
[OJKH] metagenome; faeces
648
721
+
Ile2
CAT
[ENA]
¢þ
>WENV182947584
OKVM01003969
[OKVM] human gut metagenome; human gut
1244
1171
-
Ile2
CAT
[ENA]
¢þ
>WENV182953979
OKVZ01003706
[OKVZ] human gut metagenome; human gut
1433
1506
+
Ile2
CAT
[ENA]
¢þ
>WENV183179690
OLPH01010854
[OLPH] human gut metagenome; faeces
1800
1873
+
Ile2
CAT
[ENA]
¢þ
>WENV183511530
OMJG01000656
[OMJG] food metagenome; Cotija cheese
2595
2668
+
Ile2
CAT
[ENA]
¢þ
>WENV170001789
AGFS01162768
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
107
180
+
Met
CAT
[ENA]
¢þ
>PHG181002589
KX160205
Siphoviridae
Lactococcus phage 49801 (KX160205)
96
169
+
Met
CAT
[ENA]
¡û
>PHG181002592
KX160212
Siphoviridae
Lactococcus phage 98101 (KX160212)
34457
34530
+
Met
CAT
[ENA]
¡û
>PHG181002593
KX160214
Siphoviridae
Lactococcus phage 98103 (KX160214)
115
188
+
Met
CAT
[ENA]
¡û
>PHG181002594
KX160215
Siphoviridae
Lactococcus phage 98104 (KX160215)
106
179
+
Met
CAT
[ENA]
¡û
>C181109219
CP024954
Bacillota
Lactococcus lactis subsp. lactis F44 [CP024954]
1702352
1702279
-
Met
CAT
-
¡û
>C181109414
CP024958
Bacillota
Lactococcus lactis subsp. lactis G423 [CP024958]
1622256
1622183
-
Met
CAT
-
¡û
>C181118021
CP025500
Bacillota
Lactococcus lactis subsp. lactis G50 [CP025500]
1656210
1656137
-
Met
CAT
-
¡û
>W141726832
JNCC01000002
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis [JNCC]
461
388
-
Met
CAT
[ENA]
¡û
>W1910181490
BJMA01000059
Bacillota
Lactococcus lactis subsp. lactis NBRC 12007 [BJMA]
1855
1782
-
Met
CAT
[ENA]
¡û
>W1910804823
MTJP01000007
Bacillota
Lactococcus lactis 21 [MTJP]
386649
386576
-
Met
CAT
[ENA]
¡û
>W1910804828
MTJP01000014
Bacillota
Lactococcus lactis 21 [MTJP]
47877
47802
-
Met
CAT
[ENA]
¡û
>W1910804934
MTJR01000007
Bacillota
Lactococcus lactis 417 [MTJR]
30924
30849
-
Met
CAT
[ENA]
¡û
>W1910804970
MTJS01000002
Bacillota
Lactococcus lactis 537 [MTJS]
59014
59089
+
Met
CAT
[ENA]
¡û
>W1911594281
PKRZ01000001
Bacillota
Lactococcus lactis subsp. lactis WFLU12 [PKRZ]
145527
145454
-
Met
CAT
[ENA]
¡û
>W1911594285
PKRZ01000002
Bacillota
Lactococcus lactis subsp. lactis WFLU12 [PKRZ]
33845
33920
+
Met
CAT
[ENA]
¡û
>W1911798374
QYRO01000006
Bacillota
Lactococcus lactis subsp. lactis W8 [QYRO]
62759
62832
+
Met
CAT
[ENA]
¡û
>W1810270755
PREW01000001
Bacillota
Lactococcus lactis PAZ [PREW]
420254
420329
+
Met
CAT
[ENA]
¡û
>W1810796468
QRLU01000001
Bacillota
Lactococcus lactis AM11-49 [QRLU]
38962
39037
+
Met
CAT
[ENA]
¡û
>W1810796476
QRLU01000002
Bacillota
Lactococcus lactis AM11-49 [QRLU]
59365
59440
+
Met
CAT
[ENA]
¡û
>C151042523
CP009054
Bacillota
Lactococcus lactis subsp. lactis NCDO 2118 [CP009054]
1773641
1773568
-
Met
CAT
[Ensembl]
¡û
>C151052183
CP009472
Bacillota
Lactococcus lactis AI06 [CP009472]
1093382
1093457
+
Met
CAT
[Ensembl]
¡û
>C151063798
CP010050
Bacillota
Lactococcus lactis subsp. lactis S0 [CP010050]
1434287
1434212
-
Met
CAT
[Ensembl]
¡û
>WENV11101861
AGFS01162768
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
107
180
+
Met
CAT
[ENA]
¡û
>W1511344648
JRFX01000003
Bacillota
Lactococcus lactis Bpl1 [JRFX]
321
394
+
Met
CAT
[ENA]
¡û
>W1511349116
JRKY01000028
Bacillota
Lactococcus lactis subsp. lactis CECT 4433 [JRKY]
233
158
-
Met
CAT
[ENA]
¡û
>W1511584240
LAVD01000054
Bacillota
Lactococcus lactis subsp. lactis DPC6853 [LAVD]
28634
28707
+
Met
CAT
[ENA]
¡û
>W11157460
AFCC01000033
Bacillota
Lactococcus garvieae 21881 [AFCC]
136649
136576
-
Met
CAT
[ENA]
¡û
>W1610635183
LITB01000018
Bacillota
Lactococcus cremoris subsp. cremoris [LITB]
115524
115451
-
Met
CAT
[ENA]
¡û
>W1610638051
LIWD01000141
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis [LIWD]
306
379
+
Met
CAT
[ENA]
¡û
>W1610638923
LIYG01000078
Bacillota
Lactococcus cremoris subsp. cremoris [LIYG]
359
434
+
Met
CAT
[ENA]
¡û
>W1610680582
LKLF01000006
Bacillota
Lactococcus lactis subsp. lactis [LKLF]
22509
22582
+
Met
CAT
[ENA]
¡û
>W1610680585
LKLF01000008
Bacillota
Lactococcus lactis subsp. lactis [LKLF]
13509
13434
-
Met
CAT
[ENA]
¡û
>W1610680703
LKLH01000059
Bacillota
Lactococcus lactis subsp. lactis [LKLH]
687
760
+
Met
CAT
[ENA]
¡û
>W1610680751
LKLI01000019
Bacillota
Lactococcus lactis subsp. lactis [LKLI]
2763
2690
-
Met
CAT
[ENA]
¡û
>W1610680779
LKLI01000084
Bacillota
Lactococcus lactis subsp. lactis [LKLI]
260441
260368
-
Met
CAT
[ENA]
¡û
>W1610680785
LKLI01000105
Bacillota
Lactococcus lactis subsp. lactis [LKLI]
4922
4995
+
Met
CAT
[ENA]
¡û
>W1610680801
LKLJ01000005
Bacillota
Lactococcus lactis subsp. lactis [LKLJ]
260443
260370
-
Met
CAT
[ENA]
¡û
>W1610680807
LKLJ01000013
Bacillota
Lactococcus lactis subsp. lactis [LKLJ]
95616
95543
-
Met
CAT
[ENA]
¡û
>W1610680896
LKLK01000021
Bacillota
Lactococcus lactis subsp. lactis [LKLK]
32327
32254
-
Met
CAT
[ENA]
¡û
>W1610680957
LKLL01000033
Bacillota
Lactococcus lactis subsp. lactis [LKLL]
66766
66839
+
Met
CAT
[ENA]
¡û
>W1610681025
LKLN01000021
Bacillota
Lactococcus lactis subsp. lactis [LKLN]
80142
80217
+
Met
CAT
[ENA]
¡û
>W1610681066
LKLO01000006
Bacillota
Lactococcus lactis subsp. lactis [LKLO]
26155
26082
-
Met
CAT
[ENA]
¡û
>W1610681118
LKLO01000072
Bacillota
Lactococcus lactis subsp. lactis [LKLO]
33729
33656
-
Met
CAT
[ENA]
¡û
>W1610681219
LKLQ01000027
Bacillota
Lactococcus lactis subsp. lactis [LKLQ]
84398
84323
-
Met
CAT
[ENA]
¡û
>W1610681232
LKLR01000017
Bacillota
Lactococcus lactis subsp. lactis [LKLR]
1024
951
-
Met
CAT
[ENA]
¡û
>W1610681258
LKLR01000068
Bacillota
Lactococcus lactis subsp. lactis [LKLR]
100
25
-
Met
CAT
[ENA]
¡û
>W1610681284
LKLR01000131
Bacillota
Lactococcus lactis subsp. lactis [LKLR]
4320
4393
+
Met
CAT
[ENA]
¡û
>W1610681470
LKLV01000164
Bacillota
Lactococcus lactis subsp. lactis [LKLV]
439
514
+
Met
CAT
[ENA]
¡û
>W1710620238
JMMZ01000015
Bacillota
Lactococcus cremoris subsp. cremoris IBB477 [JMMZ]
3083
3158
+
Met
CAT
[ENA]
¡û
>W1710769756
LITB01000018
Bacillota
Lactococcus cremoris subsp. cremoris [LITB]
115524
115451
-
Met
CAT
[ENA]
¡û
>W1710773726
LIWD01000141
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis [LIWD]
306
379
+
Met
CAT
[ENA]
¡û
>W1710774754
LIYG01000078
Bacillota
Lactococcus cremoris subsp. cremoris [LIYG]
359
434
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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