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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282338 (10 seq.)
>WENV181189985
OEOF01373570
[OEOF] activated sludge metagenome; Activated Sludge
4
79
+
Thr
TGT
[ENA]
¢þ
>WENV170007748
AMWB02155163
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
216184
216109
-
Thr
TGT
[ENA]
¢þ
>SRA1035240
SRR035089.267225
454 Sequencing (SRP001810)
284
209
-
Thr
TGT
[SRA]
>SRA1048720
SRR035094.234325
454 Sequencing (SRP001815)
431
506
+
Thr
TGT
[SRA]
>W1511596167
LBNX01000003
Unclassified
candidate division TM6 bacterium GW2011_GWF2_28_16 [LBNX]
128311
128386
+
Thr
TGT
[ENA]
¡û
>W1511599274
LBSD01000056
Unclassified
candidate division TM6 bacterium GW2011_GWF2_36_6 [LBSD]
9245
9170
-
Thr
TGT
[ENA]
¡û
>W1511600096
LBTE01000001
Unclassified
candidate division TM6 bacterium GW2011_GWF2_37_49 [LBTE]
262583
262508
-
Thr
TGT
[ENA]
¡û
>W1511600664
LBTY01000002
Unclassified
candidate division TM6 bacterium GW2011_GWF2_38_10 [LBTY]
53542
53467
-
Thr
TGT
[ENA]
¡û
>W1610586448
LDIV01000001
Unclassified
candidate division TM6 bacterium UASB124 [LDIV]
442537
442462
-
Thr
TGT
[ENA]
¡û
>W1710705578
LDIV01000001
Unclassified
candidate division TM6 bacterium UASB124 [LDIV]
442537
442462
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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