This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282342 (45 seq.)
>W1710909690
LNQS01000001
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
904349
904273
-
Met
CAT
[ENA]
¡û
>W1711228232
LXWK01000011
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
320284
320360
+
Met
CAT
[ENA]
¡û
>W1711270526
LZEJ01000001
Gammaproteobacteria
Alishewanella sp. HH-ZS [LZEJ]
21892
21968
+
Met
CAT
[ENA]
¡û
>W1711486075
MKEK01000001
Gammaproteobacteria
Rheinheimera salexigens KH87 [MKEK]
1252661
1252585
-
Met
CAT
[ENA]
¡û
>W131045885
AMRX01000002
Gammaproteobacteria
Gayadomonas joobiniege G7 [AMRX]
74827
74903
+
Met
CAT
[ENA]
¡û
>W131180625
ARNG01000083
Gammaproteobacteria
Arsukibacterium perlucidum DSM 18276 [ARNG]
195438
195514
+
Met
CAT
[ENA]
¡û
>W131225062
AUDG01000084
Gammaproteobacteria
Rheinheimera baltica DSM 14885 [AUDG]
5355
5279
-
Met
CAT
[ENA]
¡û
>W141067232
ARZY01000013
Gammaproteobacteria
Catenovulum agarivorans DS-2 [ARZY]
42434
42510
+
Met
CAT
[ENA]
¡û
>WENV181367314
OFPZ01004437
[OFPZ] freshwater metagenome; Freshwater Lake
538
462
-
Met
CAT
[ENA]
¢þ
>WENV181414306
OGCL01000200
[OGCL] hot springs metagenome; Hot spring water
28688
28764
+
Met
CAT
[ENA]
¢þ
>WENV181414856
OGCL01001794
[OGCL] hot springs metagenome; Hot spring water
16914
16989
+
Met
CAT
[ENA]
¢þ
>WENV181837204
OGVK01008131
[OGVK] freshwater metagenome; freshwater
105
29
-
Met
CAT
[ENA]
¢þ
>WENV181837223
OGVK01009779
[OGVK] freshwater metagenome; freshwater
137
61
-
Met
CAT
[ENA]
¢þ
>WENV170314951
CESO01047161
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
24985
24909
-
Met
CAT
[ENA]
¢þ
>WENV170444729
CEUX01211474
[CEUX] marine metagenome genome assembly TARA_123_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2972
2896
-
Met
CAT
[ENA]
¢þ
>WENV170458263
CEVB01059553
[CEVB] marine metagenome genome assembly TARA_124_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
296
372
+
Met
CAT
[ENA]
¢þ
>WENV170521148
CEWF01099534
[CEWF] marine metagenome genome assembly TARA_122_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
361
285
-
Met
CAT
[ENA]
¢þ
>WENV170574146
FLYM01008808
[FLYM] hot springs metagenome; Sediment
173
249
+
Met
CAT
[ENA]
¢þ
>WENV170924012
MDTG01058660
[MDTG] marine metagenome; seawater
132672
132748
+
Met
CAT
[ENA]
¢þ
>WENV170965057
MTET01001413
[MTET] soil metagenome; garden soil control
119592
119668
+
Met
CAT
[ENA]
¢þ
>WENV170966208
MTEX01004307
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
20747
20823
+
Met
CAT
[ENA]
¢þ
>C191129077
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
3485280
3485356
+
Met
CAT
-
¡û
>C191153517
CP037745
Gammaproteobacteria
Rheinheimera sp. D18 [CP037745]
2346793
2346869
+
Met
CAT
-
¡û
>W141779372
JONU01000005
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
98304
98380
+
Met
CAT
[ENA]
¡û
>W1911492731
OBEB01000004
Gammaproteobacteria
Arsukibacterium tuosuense CGMCC 1.12461 [OBEB]
412460
412384
-
Met
CAT
[ENA]
¡û
>W1911597928
PNRD01000004
Gammaproteobacteria
Rheinheimera aquimaris B26 [PNRD]
91292
91368
+
Met
CAT
[ENA]
¡û
>W1511566729
LAHO01000001
Gammaproteobacteria
Arsukibacterium ikkense GCM72 [LAHO]
302758
302682
-
Met
CAT
[ENA]
¡û
>W1511566816
LAHP01000012
Gammaproteobacteria
Arsukibacterium sp. MJ3 [LAHP]
90276
90200
-
Met
CAT
[ENA]
¡û
>W1511573490
LAMX01000025
Gammaproteobacteria
Rheinheimera sp. KL1 [LAMX]
94788
94712
-
Met
CAT
[ENA]
¡û
>W1511584710
LAVS01000035
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
2952
3028
+
Met
CAT
[ENA]
¡û
>W11162894
AFHI01000030
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
10295
10219
-
Met
CAT
[ENA]
¡û
>C121016552
FP929140
Gammaproteobacteria
gamma proteobacterium HdN1 [FP929140]
3444776
3444700
-
Met
CAT
[Ensembl]
¡û
>C161058509
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
4456458
4456534
+
Met
CAT
-
¡û
>C161058535
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
2263042
2262966
-
Met
CAT
-
¡û
>W121040568
AHTH01000046
Gammaproteobacteria
Alishewanella jeotgali KCTC 22429 [AHTH]
17923
17847
-
Met
CAT
[ENA]
¡û
>W121070141
AJWM01000001
Gammaproteobacteria
Catenovulum agarivorans YM01 [AJWM]
89163
89087
-
Met
CAT
[ENA]
¡û
>W121087038
AKKU01000012
Gammaproteobacteria
Alishewanella agri BL06 [AKKU]
114473
114549
+
Met
CAT
[ENA]
¡û
>W121104113
ALAB01000006
Gammaproteobacteria
Alishewanella aestuarii B11 [ALAB]
901
825
-
Met
CAT
[ENA]
¡û
>W121124668
BAFK01000007
Gammaproteobacteria
Rheinheimera nanhaiensis E407-8 [BAFK]
172125
172201
+
Met
CAT
[ENA]
¡û
>W1610585481
LCWL01000117
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
843
767
-
Met
CAT
[ENA]
¡û
>W1610768049
LNQS01000001
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
904349
904273
-
Met
CAT
[ENA]
¡û
>W1611012149
LXWK01000011
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
320284
320360
+
Met
CAT
[ENA]
¡û
>W1710533917
FNRM01000006
Gammaproteobacteria
Alkalimonas amylolytica [FNRM]
27701
27777
+
Met
CAT
[ENA]
¡û
>W1710540906
FNXF01000015
Gammaproteobacteria
Rheinheimera pacifica [FNXF]
82805
82729
-
Met
CAT
[ENA]
¡û
>W1710704672
LCWL01000117
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
843
767
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK