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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282366 (9 seq.)
>W131244782
CAQJ01000040
Nitrospinota
Nitrospina gracilis 3/211 [CAQJ]
43057
42982
-
Lys
CTT
[ENA]
¡û
>WENV180695267
OCZS013249839
[OCZS] soil metagenome; soil
151
79
-
Lys
CTT
[ENA]
¢þ
>WENV181165988
OEIS01346937
[OEIS] soil metagenome; soil
156
84
-
Lys
CTT
[ENA]
¢þ
>WENV181295953
OFHJ01002681
[OFHJ] soil metagenome; Clay
2519
2594
+
Lys
CTT
[ENA]
¢þ
>WENV170456220
CEVA01184892
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
603
528
-
Lys
CTT
[ENA]
¢þ
>WENV170722223
LSQX01221794
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
40825
40750
-
Lys
CTT
[ENA]
¢þ
>WENV170916809
MDTE01183572
[MDTE] marine metagenome; seawater
505
578
+
Lys
CTT
[ENA]
¢þ
>SRA1035366
SRR035089.291024
454 Sequencing (SRP001810)
226
301
+
Lys
CTT
[SRA]
>W1511545311
JZKI01000044
Nitrospinota
Candidatus Nitromaritima sp. SCGC AAA799-A02 SCGC_AAA799_A02 [JZKI]
3658
3733
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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