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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282382 (44 seq.)
>C171115906
CP021111
Betaproteobacteria
Bordetella genomosp. 13 AU7206 [CP021111]
2152759
2152683
-
Val
GAC
-
¡û
>C001943
AM167904
Betaproteobacteria
Bordetella avium 197N [AM167904]
2442088
2442012
-
Val
GAC
[Ensembl]
¡û
>W141139270
AWNL01000003
Betaproteobacteria
Bordetella trematum CCUG 13902 [AWNL]
42664
42588
-
Val
GAC
[ENA]
¡û
>C08001898
AM902716
Betaproteobacteria
Bordetella petrii DSM 12804 [AM902716]
2985027
2984954
-
Val
GAC
[Ensembl]
¡û
>W141277140
JAEJ01000011
Betaproteobacteria
Bordetella petrii J49 [JAEJ]
90015
89939
-
Val
GAC
[ENA]
¡û
>W141277432
JAEP01000001
Betaproteobacteria
Bordetella petrii J51 [JAEP]
1153
1229
+
Val
GAC
[ENA]
¡û
>WENV170656349
JTFO01010865
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1170
1094
-
Val
GAC
[ENA]
¢þ
>C181034371
CP018898
Betaproteobacteria
Bordetella trematum [CP018898]
2746890
2746814
-
Val
GAC
-
¡û
>C191012260
CP016340
Betaproteobacteria
Bordetella trematum F581 [CP016340]
2883976
2883900
-
Val
GAC
-
¡û
>C191035889
CP025521
Betaproteobacteria
Bordetella avium Owl19 [CP025521]
2372426
2372350
-
Val
GAC
-
¡û
>C191035948
CP025522
Betaproteobacteria
Bordetella avium JBBA [CP025522]
2397576
2397500
-
Val
GAC
-
¡û
>W1910890556
NEVI01000014
Betaproteobacteria
Bordetella genomosp. 7 7 AU23756 [NEVI]
408028
407952
-
Val
GAC
[ENA]
¡û
>W1910890654
NEVK01000004
Betaproteobacteria
Bordetella genomosp. 7 7 AU18089 [NEVK]
688522
688446
-
Val
GAC
[ENA]
¡û
>W1910890711
NEVL01000003
Betaproteobacteria
Bordetella genomosp. 1 1 AU17610 [NEVL]
1433409
1433333
-
Val
GAC
[ENA]
¡û
>W1910890790
NEVM01000005
Betaproteobacteria
Bordetella genomosp. 10 10 AU16122 [NEVM]
498348
498272
-
Val
GAC
[ENA]
¡û
>W1910890864
NEVO01000008
Betaproteobacteria
Bordetella genomosp. 4 4 AU14378 [NEVO]
720548
720472
-
Val
GAC
[ENA]
¡û
>W1910890977
NEVQ01000013
Betaproteobacteria
Bordetella genomosp. 4 4 AU9919 [NEVQ]
1154070
1153994
-
Val
GAC
[ENA]
¡û
>W1910891041
NEVR01000004
Betaproteobacteria
Bordetella genomosp. 1 1 AU9795 [NEVR]
690830
690754
-
Val
GAC
[ENA]
¡û
>W1910891137
NEVT01000006
Betaproteobacteria
Bordetella genomosp. 2 2 AU8256 [NEVT]
781580
781504
-
Val
GAC
[ENA]
¡û
>W1911746166
QVSL01000009
Betaproteobacteria
Bordetella avium BA1 [QVSL]
47148
47072
-
Val
GAC
[ENA]
¡û
>W1911746193
QVSM01000005
Betaproteobacteria
Bordetella avium BA19 [QVSM]
260229
260305
+
Val
GAC
[ENA]
¡û
>W1911746259
QVSN01000006
Betaproteobacteria
Bordetella avium BA18 [QVSN]
254248
254324
+
Val
GAC
[ENA]
¡û
>W1911746324
QVSO01000006
Betaproteobacteria
Bordetella avium BA17 [QVSO]
41622
41546
-
Val
GAC
[ENA]
¡û
>W1911746381
QVSP01000009
Betaproteobacteria
Bordetella avium BA16 [QVSP]
87528
87604
+
Val
GAC
[ENA]
¡û
>W1911746435
QVSQ01000009
Betaproteobacteria
Bordetella avium BA15 [QVSQ]
41622
41546
-
Val
GAC
[ENA]
¡û
>W1911746493
QVSR01000011
Betaproteobacteria
Bordetella avium BA14 [QVSR]
44694
44618
-
Val
GAC
[ENA]
¡û
>W1911746549
QVSS01000010
Betaproteobacteria
Bordetella avium BA13 [QVSS]
90811
90887
+
Val
GAC
[ENA]
¡û
>W1911746596
QVST01000006
Betaproteobacteria
Bordetella avium BA12 [QVST]
298669
298745
+
Val
GAC
[ENA]
¡û
>W1911746665
QVSU01000011
Betaproteobacteria
Bordetella avium BA11 [QVSU]
68972
69048
+
Val
GAC
[ENA]
¡û
>W1911746720
QVSV01000010
Betaproteobacteria
Bordetella avium BA10 [QVSV]
67792
67868
+
Val
GAC
[ENA]
¡û
>W1911746775
QVSW01000010
Betaproteobacteria
Bordetella avium ATCC 35086 [QVSW]
84098
84174
+
Val
GAC
[ENA]
¡û
>W1911746821
QVSX01000009
Betaproteobacteria
Bordetella avium BA8 [QVSX]
66320
66396
+
Val
GAC
[ENA]
¡û
>W1911746884
QVSY01000003
Betaproteobacteria
Bordetella avium BA6 [QVSY]
42304
42228
-
Val
GAC
[ENA]
¡û
>W1911746948
QVSZ01000011
Betaproteobacteria
Bordetella avium BA5 [QVSZ]
44541
44465
-
Val
GAC
[ENA]
¡û
>W1911747003
QVTA01000010
Betaproteobacteria
Bordetella avium BA4 [QVTA]
41622
41546
-
Val
GAC
[ENA]
¡û
>W1911747061
QVTB01000008
Betaproteobacteria
Bordetella avium BA3 [QVTB]
42985
42909
-
Val
GAC
[ENA]
¡û
>W1810692866
QLKW01000011
Betaproteobacteria
Bordetella avium HAMBI_2160 [QLKW]
66335
66411
+
Val
GAC
[ENA]
¡û
>W1511310819
JPQP01000004
Betaproteobacteria
Bordetella trematum HR18 [JPQP]
112682
112606
-
Val
GAC
[ENA]
¡û
>W1511484091
JWMK01000022
Betaproteobacteria
Bordetella avium Nh1210 [JWMK]
39431
39507
+
Val
GAC
[ENA]
¡û
>C161109087
LT546645
Betaproteobacteria
Bordetella trematum H044680328 [LT546645]
4191386
4191310
-
Val
GAC
[Ensembl]
¡û
>W1610447523
FKBR01000009
Betaproteobacteria
Bordetella trematum [FKBR]
281966
282042
+
Val
GAC
[ENA]
¡û
>W1610447635
FKBT01000017
Betaproteobacteria
Bordetella trematum [FKBT]
112811
112735
-
Val
GAC
[ENA]
¡û
>W1710447151
FKBR01000009
Betaproteobacteria
Bordetella trematum [FKBR]
281966
282042
+
Val
GAC
[ENA]
¡û
>W1710447263
FKBT01000017
Betaproteobacteria
Bordetella trematum [FKBT]
112811
112735
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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