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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282400 (11 seq.)
>WENV180078585
MPMB02114116
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
169
97
-
Ala
TGC
[ENA]
¢þ
>WENV180094394
MTBK01004669
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
269
345
+
Ala
TGC
[ENA]
¢þ
>WENV183809884
PVBE011428172
[PVBE] marine metagenome; water
233
160
-
Ala
TGC
[ENA]
¢þ
>WENV170539649
CEWR01275513
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
275
347
+
Ala
TGC
[ENA]
¢þ
>SRA1019208
SRR035082.419234
454 Sequencing (SRP001803)
296
371
+
Ala
TGC
[SRA]
>SRA1029282
SRR035087.103492
454 Sequencing (SRP001808)
434
359
-
Ala
TGC
[SRA]
>SRA1034150
SRR035088.510305
454 Sequencing (SRP001809)
154
229
+
Ala
TGC
[SRA]
>SRA1035564
SRR035089.331678
454 Sequencing (SRP001810)
238
314
+
Ala
TGC
[SRA]
>SRA1035623
SRR035089.342533
454 Sequencing (SRP001810)
24
99
+
Ala
TGC
[SRA]
>SRA1036764
SRR035089.609493
454 Sequencing (SRP001810)
200
127
-
Ala
TGC
[SRA]
>SRA1048089
SRR035094.106997
454 Sequencing (SRP001815)
226
149
-
Ala
TGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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