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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282409 (144 seq.)
>W1711055658
LRVC01000046
Bacillota
Megasphaera sp. MJR8396C [LRVC]
86181
86257
+
Pro
TGG
[ENA]
¡û
>W1711120541
LUGJ01000021
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
90811
90887
+
Pro
TGG
[ENA]
¡û
>W1712038440
NFIY01000004
Bacillota
Megasphaera sp. An286 [NFIY]
42690
42614
-
Pro
TGG
[ENA]
¡û
>W131109506
APHX01000018
Bacillota
Megasphaera sp. BL7 [APHX]
55032
55108
+
Pro
TGG
[ENA]
¡û
>W131109568
APHY01000007
Bacillota
Megasphaera sp. NM10 [APHY]
360
284
-
Pro
TGG
[ENA]
¡û
>W131251593
CAVO010000051
Bacillota
Megasphaera massiliensis NP3 [CAVO]
9311
9235
-
Pro
TGG
[ENA]
¡û
>WENV180184610
OAWS01000781
[OAWS] human gut metagenome; faeces
10968
11044
+
Pro
TGG
[ENA]
¢þ
>WENV180235937
OBCU01012736
[OBCU] human gut metagenome; human gut
149
73
-
Pro
TGG
[ENA]
¢þ
>WENV180289641
OBIU01000043
[OBIU] human gut metagenome; human gut
8061
7985
-
Pro
TGG
[ENA]
¢þ
>WENV180305478
OBJO01000205
[OBJO] human gut metagenome; human gut
13912
13836
-
Pro
TGG
[ENA]
¢þ
>WENV180405590
OBTM01041268
[OBTM] human gut metagenome; ENVO:feces
243
167
-
Pro
TGG
[ENA]
¢þ
>WENV180574832
OCLX01007057
[OCLX] human gut metagenome; human gut
445
521
+
Pro
TGG
[ENA]
¢þ
>WENV180578867
OCMC01004057
[OCMC] human gut metagenome; human gut
2548
2472
-
Pro
TGG
[ENA]
¢þ
>WENV180738286
ODHC01143710
[ODHC] human metagenome; G_DNA_Stool
85
9
-
Pro
TGG
[ENA]
¢þ
>WENV180840823
ODKJ01011945
[ODKJ] human metagenome; G_DNA_Stool
381
457
+
Pro
TGG
[ENA]
¢þ
>WENV180996137
ODVR01110224
[ODVR] human metagenome; G_DNA_Stool
136
212
+
Pro
TGG
[ENA]
¢þ
>WENV181132949
OEGE01032405
[OEGE] human metagenome; G_DNA_Stool
262
186
-
Pro
TGG
[ENA]
¢þ
>WENV181336710
OFME01000002
[OFME] human gut metagenome; human gut
12562
12486
-
Pro
TGG
[ENA]
¢þ
>WENV181340517
OFMH01000337
[OFMH] human gut metagenome; human gut
34079
34003
-
Pro
TGG
[ENA]
¢þ
>WENV181353422
OFMR01008783
[OFMR] human gut metagenome; human gut
844
920
+
Pro
TGG
[ENA]
¢þ
>WENV181354809
OFMT01000042
[OFMT] human gut metagenome; human gut
44493
44417
-
Pro
TGG
[ENA]
¢þ
>WENV181394507
OFRZ01000127
[OFRZ] human gut metagenome; human gut
74439
74515
+
Pro
TGG
[ENA]
¢þ
>WENV181421107
OGCN01014322
[OGCN] human gut metagenome; human gut
3445
3521
+
Pro
TGG
[ENA]
¢þ
>WENV181435822
OGDF01006656
[OGDF] human gut metagenome; human gut
7587
7663
+
Pro
TGG
[ENA]
¢þ
>WENV181456730
OGEH01000224
[OGEH] metagenome; Human gut stool
26947
27023
+
Pro
TGG
[ENA]
¢þ
>WENV181464768
OGEP01002739
[OGEP] metagenome; Human gut stool
12510
12586
+
Pro
TGG
[ENA]
¢þ
>WENV181476284
OGFE01023987
[OGFE] metagenome; Human gut stool
217
141
-
Pro
TGG
[ENA]
¢þ
>WENV181774894
OGRF01000222
[OGRF] human gut metagenome; faeces
47285
47361
+
Pro
TGG
[ENA]
¢þ
>WENV181868652
OGWX01001158
[OGWX] human gut metagenome; faeces
904
980
+
Pro
TGG
[ENA]
¢þ
>WENV181871271
OGWZ01000055
[OGWZ] human gut metagenome; faeces
515
439
-
Pro
TGG
[ENA]
¢þ
>WENV181885127
OGXJ01006600
[OGXJ] human gut metagenome; faeces
198
122
-
Pro
TGG
[ENA]
¢þ
>WENV181885719
OGXK01000024
[OGXK] human gut metagenome; faeces
41237
41161
-
Pro
TGG
[ENA]
¢þ
>WENV181905607
OGXY01000797
[OGXY] human gut metagenome; faeces
914
990
+
Pro
TGG
[ENA]
¢þ
>WENV181911260
OGYD01000746
[OGYD] human gut metagenome; faeces
913
989
+
Pro
TGG
[ENA]
¢þ
>WENV181912957
OGYE01001896
[OGYE] human gut metagenome; faeces
2126
2050
-
Pro
TGG
[ENA]
¢þ
>WENV181923319
OGYL01000202
[OGYL] human gut metagenome; faeces
30143
30067
-
Pro
TGG
[ENA]
¢þ
>WENV181931376
OGYQ01000315
[OGYQ] human gut metagenome; faeces
2581
2505
-
Pro
TGG
[ENA]
¢þ
>WENV181933874
OGYT01000238
[OGYT] human gut metagenome; faeces
17980
17904
-
Pro
TGG
[ENA]
¢þ
>WENV181936628
OGYV01002542
[OGYV] human gut metagenome; faeces
2986
2910
-
Pro
TGG
[ENA]
¢þ
>WENV181939216
OGYX01000622
[OGYX] human gut metagenome; faeces
12744
12668
-
Pro
TGG
[ENA]
¢þ
>WENV181944954
OGZB01000660
[OGZB] human gut metagenome; faeces
19653
19577
-
Pro
TGG
[ENA]
¢þ
>WENV181947792
OGZD01039238
[OGZD] human gut metagenome; faeces
640
716
+
Pro
TGG
[ENA]
¢þ
>WENV181949477
OGZF01001807
[OGZF] human gut metagenome; faeces
9674
9750
+
Pro
TGG
[ENA]
¢þ
>WENV181952273
OGZI01000121
[OGZI] human gut metagenome; faeces
41004
40928
-
Pro
TGG
[ENA]
¢þ
>WENV181959068
OGZM01001506
[OGZM] human gut metagenome; faeces
827
903
+
Pro
TGG
[ENA]
¢þ
>WENV181969622
OGZX01000116
[OGZX] human gut metagenome; faeces
40380
40304
-
Pro
TGG
[ENA]
¢þ
>WENV181976451
OHAD01001236
[OHAD] human gut metagenome; faeces
8526
8602
+
Pro
TGG
[ENA]
¢þ
>WENV181990495
OHAP01005065
[OHAP] human gut metagenome; faeces
967
1043
+
Pro
TGG
[ENA]
¢þ
>WENV182000438
OHAY01000005
[OHAY] human gut metagenome; faeces
25655
25731
+
Pro
TGG
[ENA]
¢þ
>WENV182008619
OHBJ01001946
[OHBJ] human gut metagenome; faeces
1448
1372
-
Pro
TGG
[ENA]
¢þ
>WENV182135573
OHKJ01000534
[OHKJ] human gut metagenome; feces
2144
2220
+
Pro
TGG
[ENA]
¢þ
>WENV182166065
OHMP01000465
[OHMP] human gut metagenome; feces
20749
20673
-
Pro
TGG
[ENA]
¢þ
>WENV182188501
OHOM01026676
[OHOM] human gut metagenome; feces
196
120
-
Pro
TGG
[ENA]
¢þ
>WENV182208196
OHPX01001717
[OHPX] human gut metagenome; feces
3992
3916
-
Pro
TGG
[ENA]
¢þ
>WENV182248706
OHSP01000368
[OHSP] human gut metagenome; feces
8022
8098
+
Pro
TGG
[ENA]
¢þ
>WENV182273560
OHUJ01001272
[OHUJ] human gut metagenome; feces
7800
7724
-
Pro
TGG
[ENA]
¢þ
>WENV182334574
OHZM01034376
[OHZM] human gut metagenome; feces
413
489
+
Pro
TGG
[ENA]
¢þ
>WENV182336015
OHZS01001450
[OHZS] human gut metagenome; feces
2197
2121
-
Pro
TGG
[ENA]
¢þ
>WENV182353380
OIBL01002862
[OIBL] human gut metagenome; feces
618
542
-
Pro
TGG
[ENA]
¢þ
>WENV182360299
OICB01001216
[OICB] human gut metagenome; feces
10116
10192
+
Pro
TGG
[ENA]
¢þ
>WENV182361500
OICD01000126
[OICD] human gut metagenome; feces
16396
16320
-
Pro
TGG
[ENA]
¢þ
>WENV182364374
OICH01002344
[OICH] human gut metagenome; feces
732
656
-
Pro
TGG
[ENA]
¢þ
>WENV182370675
OICT01002222
[OICT] human gut metagenome; feces
1182
1106
-
Pro
TGG
[ENA]
¢þ
>WENV182376009
OIDD01002096
[OIDD] human gut metagenome; feces
7021
7097
+
Pro
TGG
[ENA]
¢þ
>WENV182389512
OIED01000559
[OIED] human gut metagenome; feces
16768
16692
-
Pro
TGG
[ENA]
¢þ
>WENV182510755
OIWK01005339
[OIWK] human gut metagenome; faeces
330
254
-
Pro
TGG
[ENA]
¢þ
>WENV182516958
OIWO01000799
[OIWO] human gut metagenome; faeces
1094
1170
+
Pro
TGG
[ENA]
¢þ
>WENV182659661
OJML01027123
[OJML] human gut metagenome; feces
387
463
+
Pro
TGG
[ENA]
¢þ
>WENV182767172
OJRV01000058
[OJRV] human gut metagenome; human gut
19761
19685
-
Pro
TGG
[ENA]
¢þ
>WENV182768888
OJRW01000029
[OJRW] human gut metagenome; human gut
116123
116199
+
Pro
TGG
[ENA]
¢þ
>WENV182770293
OJRX01000052
[OJRX] human gut metagenome; human gut
19761
19685
-
Pro
TGG
[ENA]
¢þ
>WENV182772480
OJRY01002085
[OJRY] human gut metagenome; human gut
3597
3521
-
Pro
TGG
[ENA]
¢þ
>WENV182773460
OJRZ01000701
[OJRZ] human gut metagenome; human gut
19761
19685
-
Pro
TGG
[ENA]
¢þ
>WENV182774824
OJSA01001547
[OJSA] human gut metagenome; human gut
11900
11824
-
Pro
TGG
[ENA]
¢þ
>WENV182776499
OJSB01023195
[OJSB] human gut metagenome; human gut
938
1014
+
Pro
TGG
[ENA]
¢þ
>WENV182776662
OJSC01000008
[OJSC] human gut metagenome; human gut
16508
16432
-
Pro
TGG
[ENA]
¢þ
>WENV182778497
OJSD01000090
[OJSD] human gut metagenome; human gut
16508
16432
-
Pro
TGG
[ENA]
¢þ
>WENV182780440
OJSE01000147
[OJSE] human gut metagenome; human gut
88090
88166
+
Pro
TGG
[ENA]
¢þ
>WENV182782307
OJSF01000062
[OJSF] human gut metagenome; human gut
96311
96387
+
Pro
TGG
[ENA]
¢þ
>WENV182783584
OJSG01000335
[OJSG] human gut metagenome; human gut
20686
20762
+
Pro
TGG
[ENA]
¢þ
>WENV182784372
OJSH01000088
[OJSH] human gut metagenome; human gut
92789
92865
+
Pro
TGG
[ENA]
¢þ
>WENV182785561
OJSI01000091
[OJSI] human gut metagenome; human gut
19761
19685
-
Pro
TGG
[ENA]
¢þ
>WENV182786570
OJSJ01000073
[OJSJ] human gut metagenome; human gut
92793
92869
+
Pro
TGG
[ENA]
¢þ
>WENV182787412
OJSK01000117
[OJSK] human gut metagenome; human gut
70300
70376
+
Pro
TGG
[ENA]
¢þ
>WENV182789030
OJSL01002323
[OJSL] human gut metagenome; human gut
1448
1372
-
Pro
TGG
[ENA]
¢þ
>WENV182790734
OJSM01070638
[OJSM] human gut metagenome; human gut
429
505
+
Pro
TGG
[ENA]
¢þ
>WENV182791799
OJSN01024017
[OJSN] human gut metagenome; human gut
836
912
+
Pro
TGG
[ENA]
¢þ
>WENV182792939
OJSO01023157
[OJSO] human gut metagenome; human gut
940
1016
+
Pro
TGG
[ENA]
¢þ
>WENV182794050
OJSP01003259
[OJSP] human gut metagenome; human gut
11771
11847
+
Pro
TGG
[ENA]
¢þ
>WENV182795451
OJSQ01000693
[OJSQ] human gut metagenome; human gut
9100
9024
-
Pro
TGG
[ENA]
¢þ
>WENV182801192
OJUG01000349
[OJUG] human gut metagenome; human gut
19761
19685
-
Pro
TGG
[ENA]
¢þ
>WENV182872325
OKRV01004068
[OKRV] human gut metagenome; faeces
1445
1521
+
Pro
TGG
[ENA]
¢þ
>WENV182875119
OKRX01000185
[OKRX] human gut metagenome; faeces
27214
27290
+
Pro
TGG
[ENA]
¢þ
>WENV182882693
OKSB01001107
[OKSB] human gut metagenome; faeces
26697
26773
+
Pro
TGG
[ENA]
¢þ
>WENV182890076
OKSF01005605
[OKSF] human gut metagenome; faeces
4794
4718
-
Pro
TGG
[ENA]
¢þ
>WENV182917973
OKTV01019493
[OKTV] human gut metagenome; feces
436
512
+
Pro
TGG
[ENA]
¢þ
>WENV182925198
OKUI01017711
[OKUI] human gut metagenome; feces
905
981
+
Pro
TGG
[ENA]
¢þ
>WENV182926626
OKUM01000587
[OKUM] human gut metagenome; feces
4945
5021
+
Pro
TGG
[ENA]
¢þ
>WENV182928921
OKUO01030512
[OKUO] human gut metagenome; feces
76
1
-
Pro
TGG
[ENA]
¢þ
>WENV182929153
OKUQ01000135
[OKUQ] human gut metagenome; feces
16773
16697
-
Pro
TGG
[ENA]
¢þ
>WENV182932713
OKUU01034587
[OKUU] human gut metagenome; feces
334
258
-
Pro
TGG
[ENA]
¢þ
>WENV182941194
OKVG01000689
[OKVG] human gut metagenome; human gut
12720
12796
+
Pro
TGG
[ENA]
¢þ
>WENV182943486
OKVI01000115
[OKVI] human gut metagenome; human gut
86231
86307
+
Pro
TGG
[ENA]
¢þ
>WENV183023358
OLFS01000661
[OLFS] human gut metagenome; faeces
1094
1170
+
Pro
TGG
[ENA]
¢þ
>WENV183026532
OLFU01002449
[OLFU] human gut metagenome; faeces
11069
10993
-
Pro
TGG
[ENA]
¢þ
>WENV183027392
OLFV01000023
[OLFV] human gut metagenome; faeces
116661
116737
+
Pro
TGG
[ENA]
¢þ
>WENV183029357
OLFW01000138
[OLFW] human gut metagenome; faeces
28701
28777
+
Pro
TGG
[ENA]
¢þ
>WENV183032778
OLFY01000620
[OLFY] human gut metagenome; faeces
8876
8952
+
Pro
TGG
[ENA]
¢þ
>WENV183080823
OLIY01015653
[OLIY] human gut metagenome; human gut
1389
1465
+
Pro
TGG
[ENA]
¢þ
>WENV183088818
OLJW01000783
[OLJW] human gut metagenome; human gut
20639
20715
+
Pro
TGG
[ENA]
¢þ
>WENV183091839
OLKG01005397
[OLKG] human gut metagenome; human gut
1333
1257
-
Pro
TGG
[ENA]
¢þ
>WENV183207201
OLQA01008449
[OLQA] human gut metagenome; faeces
202
278
+
Pro
TGG
[ENA]
¢þ
>WENV183325343
OLVZ01000516
[OLVZ] human gut metagenome; faeces
27699
27775
+
Pro
TGG
[ENA]
¢þ
>WENV183332675
OLWD01003653
[OLWD] human gut metagenome; feces
3124
3048
-
Pro
TGG
[ENA]
¢þ
>WENV183349747
OLWW01003925
[OLWW] human gut metagenome; feces
3328
3252
-
Pro
TGG
[ENA]
¢þ
>WENV183394316
OLZG01000228
[OLZG] human gut metagenome; feces
34086
34162
+
Pro
TGG
[ENA]
¢þ
>WENV183465836
OMEB01002377
[OMEB] human gut metagenome; feces
2233
2157
-
Pro
TGG
[ENA]
¢þ
>WENV183469298
OMEI01002015
[OMEI] human gut metagenome; feces
4567
4643
+
Pro
TGG
[ENA]
¢þ
>WENV183485677
OMFQ01000589
[OMFQ] human gut metagenome; feces
17019
17095
+
Pro
TGG
[ENA]
¢þ
>WENV183527321
ONZW01000232
[ONZW] human gut metagenome; human gut
2201
2125
-
Pro
TGG
[ENA]
¢þ
>WENV183580547
OOCN01000090
[OOCN] human gut metagenome; human gut
75475
75551
+
Pro
TGG
[ENA]
¢þ
>WENV183608651
OODQ01000045
[OODQ] human gut metagenome; human gut
87370
87446
+
Pro
TGG
[ENA]
¢þ
>WENV183637605
OQVH01000680
[OQVH] human gut metagenome; human gut
22734
22810
+
Pro
TGG
[ENA]
¢þ
>WENV183789298
PPYF01384936
[PPYF] human gut metagenome; stool from patient with Crohn's disease
7669
7745
+
Pro
TGG
[ENA]
¢þ
>WENV170075684
CDZT01043137
[CDZT] gut metagenome; human stools
77655
77731
+
Pro
TGG
[ENA]
¢þ
>WENV170076502
CDZU01005410
[CDZU] gut metagenome; human stools
17186
17110
-
Pro
TGG
[ENA]
¢þ
>WENV170078022
CDZV01006450
[CDZV] gut metagenome; human stools
925
1001
+
Pro
TGG
[ENA]
¢þ
>C181156453
CP027569
Bacillota
Megasphaera elsdenii NCIMB702410 [CP027569]
2444776
2444700
-
Pro
TGG
-
¡û
>C181156525
CP027570
Bacillota
Megasphaera elsdenii DSM 20460 ATCC 25940 [CP027570]
2349023
2349099
+
Pro
TGG
-
¡û
>C181178718
CP029462
Bacillota
Megasphaera stantonii AJH120 [CP029462]
28161
28085
-
Pro
TGG
-
¡û
>W141559850
JHXC01000015
Bacillota
Megasphaera elsdenii T81 [JHXC]
7452
7528
+
Pro
TGG
[ENA]
¡û
>W1911179429
NQMW01000018
Bacillota
Megasphaera elsdenii indica [NQMW]
32513
32437
-
Pro
TGG
[ENA]
¡û
>W1911192070
NQXW01000001
Bacillota
Megasphaera sp. ASD88 [NQXW]
95090
95014
-
Pro
TGG
[ENA]
¡û
>W1911502831
OEQB01000003
Bacillota
Megasphaera vaginalis (ex Bordigoni et al. 2020) Marseille-P4857 [OEQB]
40622
40546
-
Pro
TGG
[ENA]
¡û
>W1810272710
PSNP01000006
Bacillota
Megasphaera stantonii AJH120 [PSNP]
117550
117626
+
Pro
TGG
[ENA]
¡û
>W10113843
ADGP01000021
Bacillota
Megasphaera genomosp. type_1 type_1 str. 28L [ADGP]
41017
40941
-
Pro
TGG
[ENA]
¡û
>W11117179
ADGP01000021
Bacillota
Megasphaera genomosp. type_1 type_1 str. 28L [ADGP]
41017
40941
-
Pro
TGG
[ENA]
¡û
>W1511353911
JRPS01000021
Bacillota
Megasphaera elsdenii 24-50 [JRPS]
15776
15852
+
Pro
TGG
[ENA]
¡û
>C161021151
CP009240
Bacillota
Megasphaera elsdenii 14-14 [CP009240]
2055036
2055112
+
Pro
TGG
-
¡û
>C161104373
HE576794
Bacillota
Megasphaera elsdenii DSM 20460 [HE576794]
1782910
1782834
-
Pro
TGG
[Ensembl]
¡û
>W1610896704
LRVC01000046
Bacillota
Megasphaera sp. MJR8396C [LRVC]
86181
86257
+
Pro
TGG
[ENA]
¡û
>W1610931738
LUGJ01000021
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
90811
90887
+
Pro
TGG
[ENA]
¡û
>W1710564562
FOQP01000004
Bacillota
Megasphaera elsdenii [FOQP]
350193
350269
+
Pro
TGG
[ENA]
¡û
>W1710589779
FRAK01000013
Bacillota
Megasphaera elsdenii [FRAK]
70861
70785
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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