This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282474 (23 seq.)
>W1710806560
LKBC01000002
Gammaproteobacteria
Pseudoalteromonas sp. P1-30 [LKBC]
990981
991057
+
Val
GAC
[ENA]
¡û
>W1710808533
LKDU01000009
Gammaproteobacteria
Pseudoalteromonas sp. P1-7a [LKDU]
62537
62613
+
Val
GAC
[ENA]
¡û
>W1710808621
LKDV01000004
Gammaproteobacteria
Pseudoalteromonas sp. P1-13-1a [LKDV]
57113
57189
+
Val
GAC
[ENA]
¡û
>W1710808734
LKDW01000025
Gammaproteobacteria
Pseudoalteromonas sp. P1-25 [LKDW]
56303
56379
+
Val
GAC
[ENA]
¡û
>W1711138061
LVCM01000008
Gammaproteobacteria
Pseudoalteromonas telluritireducens [LVCM]
158547
158471
-
Val
GAC
[ENA]
¡û
>W1711330067
MBMS01000030
Gammaproteobacteria
Pseudoalteromonas tetraodonis [MBMS]
146815
146739
-
Val
GAC
[ENA]
¡û
>W131111578
APME01000007
Gammaproteobacteria
Pseudoalteromonas agarivorans S816 [APME]
286556
286632
+
Val
GAC
[ENA]
¡û
>W141087058
AUTO01000107
Gammaproteobacteria
Pseudoalteromonas sp. TB51 [AUTO]
9284
9360
+
Val
GAC
[ENA]
¡û
>W141203377
AZIO01000120
Gammaproteobacteria
Pseudoalteromonas agarivorans NW 4327 [AZIO]
189995
189919
-
Val
GAC
[ENA]
¡û
>WENV170249417
CEQS01011024
[CEQS] marine metagenome genome assembly TARA_072_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
11747
11823
+
Val
GAC
[ENA]
¢þ
>WENV170265894
CERE01022639
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2456
2380
-
Val
GAC
[ENA]
¢þ
>W141426202
JEMJ01000010
Gammaproteobacteria
Pseudoalteromonas sp. SCSIO_11900 [JEMJ]
159419
159495
+
Val
GAC
[ENA]
¡û
>WENV170868158
MDTB01157670
[MDTB] marine metagenome; seawater
425
349
-
Val
GAC
[ENA]
¢þ
>C181010081
CP011011
Gammaproteobacteria
Pseudoalteromonas agarivorans DSM 14585 [CP011011, CP011012]
1644238
1644162
-
Val
GAC
-
¡û
>C181010260
CP011028
Gammaproteobacteria
Pseudoalteromonas espejiana DSM 9414 ATCC 29659 [CP011028, CP011029]
2081104
2081180
+
Val
GAC
-
¡û
>C181081756
CP023464
Gammaproteobacteria
Pseudoalteromonas atlantica ECSMB14104 [CP023464]
1621341
1621265
-
Val
GAC
-
¡û
>C191099722
CP033065
Gammaproteobacteria
Pseudoalteromonas agarivorans Hao 2018 [CP033065, CP033066]
1982895
1982971
+
Val
GAC
-
¡û
>C191125361
CP034439
Gammaproteobacteria
Pseudoalteromonas sp. Xi13 [CP034439, CP034440]
2034896
2034972
+
Val
GAC
-
¡û
>W1610670334
LKBC01000002
Gammaproteobacteria
Pseudoalteromonas sp. P1-30 [LKBC]
990981
991057
+
Val
GAC
[ENA]
¡û
>W1610672637
LKDU01000009
Gammaproteobacteria
Pseudoalteromonas sp. P1-7a [LKDU]
62537
62613
+
Val
GAC
[ENA]
¡û
>W1610672725
LKDV01000004
Gammaproteobacteria
Pseudoalteromonas sp. P1-13-1a [LKDV]
57113
57189
+
Val
GAC
[ENA]
¡û
>W1610672838
LKDW01000025
Gammaproteobacteria
Pseudoalteromonas sp. P1-25 [LKDW]
56303
56379
+
Val
GAC
[ENA]
¡û
>W1610949147
LVCM01000008
Gammaproteobacteria
Pseudoalteromonas telluritireducens [LVCM]
158547
158471
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK