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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282481 (92 seq.)
>W1710811759
LKIT01000005
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
644244
644168
-
Arg
CCG
[ENA]
¡û
>W1710854721
LLXS01000034
Gammaproteobacteria
Stenotrophomonas pictorum maltophilia [LLXS]
16775
16851
+
Arg
CCG
[ENA]
¡û
>W1710865814
LMGY01000020
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
38712
38636
-
Arg
CCG
[ENA]
¡û
>W1710865869
LMHA01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
1458247
1458171
-
Arg
CCG
[ENA]
¡û
>W1710866469
LMHM01000012
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
704466
704390
-
Arg
CCG
[ENA]
¡û
>W1710880588
LMSL01000002
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
468257
468181
-
Arg
CCG
[ENA]
¡û
>W1711073081
LSIF01000036
Gammaproteobacteria
Pseudoxanthomonas mexicana [LSIF]
65482
65558
+
Arg
CCG
[ENA]
¡û
>W1711386589
MEFO01000022
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
69475
69399
-
Arg
CCG
[ENA]
¡û
>W1711386678
MEFQ01000038
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-48 [MEFQ]
12205
12281
+
Arg
CCG
[ENA]
¡û
>W1711424130
MIDU01000200
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYA1_FULL_68_6 [MIDU]
1245
1169
-
Arg
CCG
[ENA]
¡û
>W131226651
AUEN01000003
Gammaproteobacteria
Lysobacter sp. URHA0019 [AUEN]
109810
109734
-
Arg
CCG
[ENA]
¡û
>W131230628
AUHT01000012
Gammaproteobacteria
Lysobacter defluvii DSM 18482 [AUHT]
43192
43268
+
Arg
CCG
[ENA]
¡û
>W131231928
AUIV01000016
Gammaproteobacteria
Thermomonas fusca DSM 15424 [AUIV]
89631
89555
-
Arg
CCG
[ENA]
¡û
>W131235364
AULN01000013
Gammaproteobacteria
Luteimonas mephitis DSM 12574 [AULN]
178710
178634
-
Arg
CCG
[ENA]
¡û
>W141094306
AVCJ01000034
Gammaproteobacteria
Arenimonas donghaensis DSM 18148 = HO3-R19 [AVCJ]
71372
71296
-
Arg
CCG
[ENA]
¡û
>WENV181192760
OEPS011010885
[OEPS] soil metagenome; soil
115
39
-
Arg
CCG
[ENA]
¢þ
>WENV181221673
OFCW01000736
[OFCW] microbial mat metagenome; Microbial Mat
2025
2101
+
Arg
CCG
[ENA]
¢þ
>W141149611
AWZR01000004
Gammaproteobacteria
Luteimonas sp. J29 [AWZR]
62219
62143
-
Arg
CCG
[ENA]
¡û
>W141170523
AXYI01000001
Gammaproteobacteria
Xanthomonadaceae bacterium JGI 0001020-F16 [AXYI]
70392
70316
-
Arg
CCG
[ENA]
¡û
>W141207720
AZNZ01000013
Gammaproteobacteria
Pseudoxanthomonas sp. J31 [AZNZ]
71372
71296
-
Arg
CCG
[ENA]
¡û
>W141216579
AZUZ01000014
Gammaproteobacteria
Pseudoxanthomonas suwonensis J47 [AZUZ]
91797
91721
-
Arg
CCG
[ENA]
¡û
>W141216701
AZVB01000031
Gammaproteobacteria
Pseudoxanthomonas sp. J35 [AZVB]
6895
6971
+
Arg
CCG
[ENA]
¡û
>W141277601
JAES01000022
Gammaproteobacteria
Pseudoxanthomonas suwonensis J43 [JAES]
7855
7931
+
Arg
CCG
[ENA]
¡û
>W141282820
JAJA01000006
Gammaproteobacteria
Lysobacter capsici AZ78 [JAJA]
85370
85446
+
Arg
CCG
[ENA]
¡û
>WENV183728945
PJTQ01001310
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
4811
4735
-
Arg
CCG
[ENA]
¢þ
>WENV183731951
PJTU01000018
[PJTU] soil metagenome; Soil enriched on wood chips: beechwood xylan treatment
96156
96080
-
Arg
CCG
[ENA]
¢þ
>WENV183732080
PJTV01000008
[PJTV] soil metagenome; Soil enriched on wood chips: alkali lignin treatment
96156
96080
-
Arg
CCG
[ENA]
¢þ
>WENV183732309
PJTX01000008
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
96156
96080
-
Arg
CCG
[ENA]
¢þ
>WENV183734095
PJTZ01000051
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
96156
96080
-
Arg
CCG
[ENA]
¢þ
>WENV183734803
PJUA01000020
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
15981
16057
+
Arg
CCG
[ENA]
¢þ
>WENV183735504
PJUB01000022
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
15981
16057
+
Arg
CCG
[ENA]
¢þ
>WENV183736079
PJUC01000018
[PJUC] soil metagenome; Soil enriched on filter paper
15981
16057
+
Arg
CCG
[ENA]
¢þ
>WENV183741577
PJUG01000085
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
65190
65114
-
Arg
CCG
[ENA]
¢þ
>WENV183741990
PJUH01000030
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
106779
106855
+
Arg
CCG
[ENA]
¢þ
>WENV183742810
PJUI01000257
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
12377
12301
-
Arg
CCG
[ENA]
¢þ
>WENV183743112
PJUJ01000040
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
106779
106855
+
Arg
CCG
[ENA]
¢þ
>WENV183743930
PJUK01000047
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
106779
106855
+
Arg
CCG
[ENA]
¢þ
>WENV183744669
PJUL01000055
[PJUL] feces metagenome; Chicken feces enriched on filter paper
106779
106855
+
Arg
CCG
[ENA]
¢þ
>WENV170018964
BBPD01002606
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
4041
4117
+
Arg
CCG
[ENA]
¢þ
>WENV170019804
BBPE01000673
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
87
163
+
Arg
CCG
[ENA]
¢þ
>WENV170020459
BBPE01008400
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1753
1677
-
Arg
CCG
[ENA]
¢þ
>WENV170650991
JRYE01113630
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
277
201
-
Arg
CCG
[ENA]
¢þ
>WENV170680918
LFEF01034237
[LFEF] freshwater metagenome; waterbloom
160
236
+
Arg
CCG
[ENA]
¢þ
>WENV170711743
LNFM01006984
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
52205
52281
+
Arg
CCG
[ENA]
¢þ
>WENV170724855
LSQX01321140
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
36147
36223
+
Arg
CCG
[ENA]
¢þ
>C181021677
CP016836
Gammaproteobacteria
Xanthomonas citri pv. mangiferaeindicae XC01 [CP016836]
1197083
1197159
+
Arg
CCG
-
¡û
>C181080854
CP023406
Gammaproteobacteria
Luteimonas chenhongjianii 100111 [CP023406]
445237
445161
-
Arg
CCG
-
¡û
>C181081817
CP023465
Gammaproteobacteria
Lysobacter capsici KNU-14 [CP023465]
5911951
5912027
+
Arg
CCG
-
¡û
>C181180383
CP029556
Gammaproteobacteria
Lysobacter oculi 83-4 [CP029556]
2270215
2270139
-
Arg
CCG
-
¡û
>C191139377
CP035376
Gammaproteobacteria
Luteimonas sp. YGD11-2 [CP035376]
3160916
3160992
+
Arg
CCG
-
¡û
>C191165682
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
2991480
2991556
+
Arg
CCG
-
¡û
>W141713883
JMTZ01000005
Gammaproteobacteria
Lysobacter antibioticus [JMTZ]
6424
6500
+
Arg
CCG
[ENA]
¡û
>W1910826182
MWQP01000008
Gammaproteobacteria
Pseudofulvimonas gallinarii DSM 21944 [MWQP]
228020
228096
+
Arg
CCG
[ENA]
¡û
>W1911283704
NTJF01000014
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0831 [NTJF]
14724
14648
-
Arg
CCG
[ENA]
¡û
>W1911283749
NTJG01000015
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0793 [NTJG]
75222
75298
+
Arg
CCG
[ENA]
¡û
>W1911283794
NTJH01000017
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0792 [NTJH]
52126
52202
+
Arg
CCG
[ENA]
¡û
>W1911283814
NTJI01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0399 [NTJI]
1694220
1694296
+
Arg
CCG
[ENA]
¡û
>W1911405240
NWQL01000005
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
9425
9349
-
Arg
CCG
[ENA]
¡û
>W1810354868
PVLF01000037
Gammaproteobacteria
Arenimonas caeni z29 [PVLF]
4844
4920
+
Arg
CCG
[ENA]
¡û
>W1511582566
LASZ01000007
Gammaproteobacteria
Luteimonas sp. FCS-9 [LASZ]
68332
68408
+
Arg
CCG
[ENA]
¡û
>W1511595037
LBMI01000009
Gammaproteobacteria
Lysobacter capsici X2-3 [LBMI]
108987
109063
+
Arg
CCG
[ENA]
¡û
>C161031565
CP011129
Gammaproteobacteria
Lysobacter antibioticus 76 [CP011129]
5588755
5588831
+
Arg
CCG
[Ensembl]
¡û
>C161031615
CP011130
Gammaproteobacteria
Lysobacter capsici 55 [CP011130]
5848729
5848805
+
Arg
CCG
[Ensembl]
¡û
>C161031643
CP011131
Gammaproteobacteria
Lysobacter gummosus 3.2.11 [CP011131]
5902979
5903055
+
Arg
CCG
[Ensembl]
¡û
>C161052123
CP013141
Gammaproteobacteria
Lysobacter antibioticus ATCC 29479 [CP013141]
464535
464459
-
Arg
CCG
-
¡û
>W1610026758
AVBH01000294
Gammaproteobacteria
Lysobacter defluvii IMMIB APB-9 = DSM 18482 [AVBH]
1129
1205
+
Arg
CCG
[ENA]
¡û
>W1610027233
AVPS01000001
Gammaproteobacteria
Lysobacter concretionis Ko07 = DSM 16239 [AVPS]
51883
51807
-
Arg
CCG
[ENA]
¡û
>W1610027360
AVPU01000031
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
10445
10521
+
Arg
CCG
[ENA]
¡û
>W1610042770
BAZI01000037
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
12718
12642
-
Arg
CCG
[ENA]
¡û
>W121110751
ALIP01000132
Gammaproteobacteria
Pseudoxanthomonas sp. GW2 [ALIP]
1219
1295
+
Arg
CCG
[ENA]
¡û
>W1610586824
LDJH01000014
Gammaproteobacteria
Stenotrophomonas koreensis [LDJH]
44217
44293
+
Arg
CCG
[ENA]
¡û
>W1610587063
LDJL01000013
Gammaproteobacteria
Pseudoxanthomonas dokdonensis [LDJL]
69481
69405
-
Arg
CCG
[ENA]
¡û
>W1610675856
LKIT01000005
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
644244
644168
-
Arg
CCG
[ENA]
¡û
>W1610716998
LLXS01000034
Gammaproteobacteria
Stenotrophomonas pictorum maltophilia [LLXS]
16775
16851
+
Arg
CCG
[ENA]
¡û
>W1610728160
LMGY01000020
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
38712
38636
-
Arg
CCG
[ENA]
¡û
>W1610728215
LMHA01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
1458247
1458171
-
Arg
CCG
[ENA]
¡û
>W1610728815
LMHM01000012
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
704466
704390
-
Arg
CCG
[ENA]
¡û
>W1610742934
LMSL01000002
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
468257
468181
-
Arg
CCG
[ENA]
¡û
>W1610912386
LSIF01000036
Gammaproteobacteria
Pseudoxanthomonas mexicana [LSIF]
65482
65558
+
Arg
CCG
[ENA]
¡û
>W1710022807
AVBH01000294
Gammaproteobacteria
Lysobacter defluvii IMMIB APB-9 = DSM 18482 [AVBH]
1129
1205
+
Arg
CCG
[ENA]
¡û
>W1710023467
AVPS01000001
Gammaproteobacteria
Lysobacter concretionis Ko07 = DSM 16239 [AVPS]
51883
51807
-
Arg
CCG
[ENA]
¡û
>W1710023594
AVPU01000031
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
10445
10521
+
Arg
CCG
[ENA]
¡û
>W1710039930
BAZI01000037
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
12718
12642
-
Arg
CCG
[ENA]
¡û
>W1710531734
FNPT01000011
Gammaproteobacteria
Lysobacter sp. yr284 [FNPT]
168684
168760
+
Arg
CCG
[ENA]
¡û
>W1710544593
FOAX01000004
Gammaproteobacteria
Pseudoxanthomonas sp. GM95 [FOAX]
349727
349803
+
Arg
CCG
[ENA]
¡û
>W1710545785
FOBU01000001
Gammaproteobacteria
Luteibacter sp. UNCMF331Sha3.1 [FOBU]
1325590
1325514
-
Arg
CCG
[ENA]
¡û
>W1710548683
FODZ01000001
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
588458
588534
+
Arg
CCG
[ENA]
¡û
>W1710555229
FOJE01000005
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
45619
45543
-
Arg
CCG
[ENA]
¡û
>W1710595306
FTLW01000002
Gammaproteobacteria
Lysobacter tolerans [FTLW]
539465
539389
-
Arg
CCG
[ENA]
¡û
>W1710601743
FUXP01000016
Gammaproteobacteria
Lysobacter spongiicola DSM 21749 [FUXP]
10466
10390
-
Arg
CCG
[ENA]
¡û
>W1710705954
LDJH01000014
Gammaproteobacteria
Stenotrophomonas koreensis [LDJH]
44217
44293
+
Arg
CCG
[ENA]
¡û
>W1710706193
LDJL01000013
Gammaproteobacteria
Pseudoxanthomonas dokdonensis [LDJL]
69481
69405
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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