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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282611 (110 seq.)
>W1711129201
LUTU01000014
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
73741
73666
-
Phe
GAA
[ENA]
¡û
>W1711143145
LVHD01000019
Alphaproteobacteria
Acetobacter malorum [LVHD]
4676
4601
-
Phe
GAA
[ENA]
¡û
>W1711143153
LVHD01000058
Alphaproteobacteria
Acetobacter malorum [LVHD]
4116
4041
-
Phe
GAA
[ENA]
¡û
>W1711143207
LVHE01000010
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
32919
32844
-
Phe
GAA
[ENA]
¡û
>C171033003
CP014687
Alphaproteobacteria
Acetobacter persici TMW2.1084 [CP014687]
2666459
2666384
-
Phe
GAA
-
¡û
>C171033144
CP014692
Alphaproteobacteria
Acetobacter aceti TMW2.1153 [CP014692]
2341524
2341599
+
Phe
GAA
-
¡û
>C171100614
CP019875
Alphaproteobacteria
Komagataeibacter nataicola RZS01 [CP019875]
1431471
1431546
+
Phe
GAA
-
¡û
>W131164889
ARBD01000005
Alphaproteobacteria
Acetobacter aceti ATCC 23746 [ARBD]
2798852
2798777
-
Phe
GAA
[ENA]
¡û
>W131240795
BAON01000008
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3255 [BAON]
18630
18705
+
Phe
GAA
[ENA]
¡û
>W131241388
BARL01000003
Alphaproteobacteria
Gluconobacter frateurii NBRC 103465 [BARL]
553323
553398
+
Phe
GAA
[ENA]
¡û
>W141200372
AYXS01000050
Alphaproteobacteria
Asaia sp. SF2.1 [AYXS]
134142
134217
+
Phe
GAA
[ENA]
¡û
>W141224556
BAIN01000010
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
5409
5484
+
Phe
GAA
[ENA]
¡û
>W141226083
BAJT01000014
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
89341
89416
+
Phe
GAA
[ENA]
¡û
>W141226121
BAJU01000020
Alphaproteobacteria
Acetobacter okinawensis JCM 25146 [BAJU]
40648
40573
-
Phe
GAA
[ENA]
¡û
>W141226167
BAJV01000010
Alphaproteobacteria
Asaia prunellae JCM 25354 [BAJV]
23575
23500
-
Phe
GAA
[ENA]
¡û
>W141226220
BAJW01000141
Alphaproteobacteria
Acetobacter persici JCM 25330 [BAJW]
4723
4798
+
Phe
GAA
[ENA]
¡û
>W141227277
BAKW01000021
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
43215
43290
+
Phe
GAA
[ENA]
¡û
>W141229930
BASM01000016
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3257 [BASM]
20393
20468
+
Phe
GAA
[ENA]
¡û
>W141247946
CBLX010000021
Alphaproteobacteria
Asaia bogorensis SF2.1 [CBLX]
41776
41851
+
Phe
GAA
[ENA]
¡û
>WENV170669350
LAHS01000016
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
133107
133032
-
Phe
GAA
[ENA]
¢þ
>C191002697
AP018515
Alphaproteobacteria
Acetobacter orientalis FAN1 [AP018515]
2609379
2609304
-
Phe
GAA
-
¡û
>W141775570
JOJU01000071
Alphaproteobacteria
Acetobacter malorum [JOJU]
4652
4577
-
Phe
GAA
[ENA]
¡û
>W1910006549
BAGS01000041
Alphaproteobacteria
Acetobacter aceti NRIC 0242 [BAGS]
29924
29849
-
Phe
GAA
[ENA]
¡û
>W1910182330
BJMU01000005
Alphaproteobacteria
Acetobacter orleanensis NBRC 13752 [BJMU]
2929
2854
-
Phe
GAA
[ENA]
¡û
>W1910182384
BJMV01000008
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
9008
9083
+
Phe
GAA
[ENA]
¡û
>W1910871842
NCXK01000002
Alphaproteobacteria
Acetobacter fabarum KR [NCXK]
162962
163037
+
Phe
GAA
[ENA]
¡û
>W1910872328
NDFO01000002
Alphaproteobacteria
Acetobacter syzygii KR-1 [NDFO]
150874
150799
-
Phe
GAA
[ENA]
¡û
>W1910872378
NDFP01000003
Alphaproteobacteria
Acetobacter syzygii KR-2 [NDFP]
215171
215246
+
Phe
GAA
[ENA]
¡û
>W1910929232
NIRT01000003
Alphaproteobacteria
Komagataeibacter nataicola LMG 1536 [NIRT]
115289
115214
-
Phe
GAA
[ENA]
¡û
>W1910990581
NKUA01000008
Alphaproteobacteria
Komagataeibacter sucrofermentans LMG 18788 [NKUA]
72133
72208
+
Phe
GAA
[ENA]
¡û
>W1910990672
NKUC01000010
Alphaproteobacteria
Komagataeibacter xylinus LMG 1515 [NKUC]
73093
73168
+
Phe
GAA
[ENA]
¡û
>W1911410422
NWTP01000002
Alphaproteobacteria
Acetobacter orleanensis CCM 3610 [NWTP]
169801
169876
+
Phe
GAA
[ENA]
¡û
>W1911597853
PNQZ01000070
Alphaproteobacteria
Asaia sp. W19 [PNQZ]
87945
87870
-
Phe
GAA
[ENA]
¡û
>W1911717679
QQBI01000004
Alphaproteobacteria
Komagataeibacter xylinus K2G30 [QQBI]
72156
72231
+
Phe
GAA
[ENA]
¡û
>W1810000584
BEWK01000078
Alphaproteobacteria
Acetobacter aceti NBRC 3281 [BEWK]
5366
5291
-
Phe
GAA
[ENA]
¡û
>W1810000653
BEWM01000002
Alphaproteobacteria
Gluconobacter cerinus NBRC 3267 [BEWM]
140396
140321
-
Phe
GAA
[ENA]
¡û
>W1810000701
BEWN01000002
Alphaproteobacteria
Gluconobacter frateurii NBRC 3264 [BEWN]
166557
166482
-
Phe
GAA
[ENA]
¡û
>W1810000750
BEWO01000006
Alphaproteobacteria
Gluconobacter japonicus NBRC 3271 [BEWO]
142826
142751
-
Phe
GAA
[ENA]
¡û
>W1810053976
PDEU01000002
Alphaproteobacteria
Acetobacter fabarum OG2 [PDEU]
174974
175049
+
Phe
GAA
[ENA]
¡û
>W1511620435
LCTG01000002
Alphaproteobacteria
Gluconobacter oxydans NL71 [LCTG]
724105
724030
-
Phe
GAA
[ENA]
¡û
>W11184465
BABW01000277
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BABW]
6434
6509
+
Phe
GAA
[ENA]
¡û
>C161001092
AP014690
Alphaproteobacteria
Asaia bogorensis NBRC 16594 [AP014690]
3039319
3039394
+
Phe
GAA
[Ensembl]
¡û
>C161095994
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
707183
707258
+
Phe
GAA
-
¡û
>C161105566
LN609302
Alphaproteobacteria
Acetobacter ghanensis LMG 23848T [LN609302]
2384661
2384736
+
Phe
GAA
[Ensembl]
¡û
>W1610040709
BAMU01000017
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
29902
29827
-
Phe
GAA
[ENA]
¡û
>W1610040735
BAMV01000006
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
25668
25593
-
Phe
GAA
[ENA]
¡û
>W1610040792
BAMW01000026
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
106053
106128
+
Phe
GAA
[ENA]
¡û
>W1610040848
BAMX01000026
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
1242
1317
+
Phe
GAA
[ENA]
¡û
>W1610040870
BAMY01000012
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
148941
149016
+
Phe
GAA
[ENA]
¡û
>W1610040917
BAMZ01000013
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
12658
12583
-
Phe
GAA
[ENA]
¡û
>W1610041174
BANG01000007
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
150732
150657
-
Phe
GAA
[ENA]
¡û
>W1610041215
BANH01000017
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
20349
20424
+
Phe
GAA
[ENA]
¡û
>W1610070886
BCTP01000011
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
72996
73071
+
Phe
GAA
[ENA]
¡û
>W121034263
AHKI01000017
Alphaproteobacteria
Gluconobacter thailandicus WSH-003 [AHKI]
105165
105240
+
Phe
GAA
[ENA]
¡û
>W121123417
BADZ01000006
Alphaproteobacteria
Gluconobacter frateurii NBRC 101659 [BADZ]
44115
44040
-
Phe
GAA
[ENA]
¡û
>C131009977
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
1169599
1169524
-
Phe
GAA
[Ensembl]
¡û
>W1610623978
LHZA01000156
Alphaproteobacteria
Acetobacter cerevisiae [LHZA]
153110
153185
+
Phe
GAA
[ENA]
¡û
>W1610624082
LHZC01000050
Alphaproteobacteria
Acetobacter malorum [LHZC]
48109
48184
+
Phe
GAA
[ENA]
¡û
>W1610624237
LHZF01000173
Alphaproteobacteria
Acetobacter malorum [LHZF]
34299
34224
-
Phe
GAA
[ENA]
¡û
>W1610624308
LHZH01000119
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
35121
35196
+
Phe
GAA
[ENA]
¡û
>W1610624351
LHZI01001462
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
3575
3650
+
Phe
GAA
[ENA]
¡û
>W1610624401
LHZJ01000077
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
73610
73535
-
Phe
GAA
[ENA]
¡û
>W1610624458
LHZK01000125
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
88409
88334
-
Phe
GAA
[ENA]
¡û
>W1610624542
LHZM01000083
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
73514
73589
+
Phe
GAA
[ENA]
¡û
>W1610624629
LHZO01000059
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
92014
91939
-
Phe
GAA
[ENA]
¡û
>W1610624807
LHZS01000096
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
20336
20411
+
Phe
GAA
[ENA]
¡û
>W1610624957
LHZV01000065
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
141928
141853
-
Phe
GAA
[ENA]
¡û
>W1610625042
LHZX01000308
Alphaproteobacteria
Acetobacter malorum [LHZX]
50832
50757
-
Phe
GAA
[ENA]
¡û
>W1610625097
LHZY01000050
Alphaproteobacteria
Acetobacter cerevisiae [LHZY]
383
308
-
Phe
GAA
[ENA]
¡û
>W1610625122
LHZZ01000555
Alphaproteobacteria
Acetobacter malorum [LHZZ]
1323
1248
-
Phe
GAA
[ENA]
¡û
>W1610625150
LIAA01000005
Alphaproteobacteria
Acetobacter cerevisiae [LIAA]
66414
66339
-
Phe
GAA
[ENA]
¡û
>W1610940274
LUTU01000014
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
73741
73666
-
Phe
GAA
[ENA]
¡û
>W1610954153
LVHD01000019
Alphaproteobacteria
Acetobacter malorum [LVHD]
4676
4601
-
Phe
GAA
[ENA]
¡û
>W1610954161
LVHD01000058
Alphaproteobacteria
Acetobacter malorum [LVHD]
4116
4041
-
Phe
GAA
[ENA]
¡û
>W1610954215
LVHE01000010
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
32919
32844
-
Phe
GAA
[ENA]
¡û
>W1710037907
BAMU01000017
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
29902
29827
-
Phe
GAA
[ENA]
¡û
>W1710037933
BAMV01000006
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
25668
25593
-
Phe
GAA
[ENA]
¡û
>W1710037990
BAMW01000026
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
106053
106128
+
Phe
GAA
[ENA]
¡û
>W1710038046
BAMX01000026
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
1242
1317
+
Phe
GAA
[ENA]
¡û
>W1710038068
BAMY01000012
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
148941
149016
+
Phe
GAA
[ENA]
¡û
>W1710038115
BAMZ01000013
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
12658
12583
-
Phe
GAA
[ENA]
¡û
>W1710038372
BANG01000007
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
150732
150657
-
Phe
GAA
[ENA]
¡û
>W1710038413
BANH01000017
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
20349
20424
+
Phe
GAA
[ENA]
¡û
>W1710068208
BCTP01000011
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
72996
73071
+
Phe
GAA
[ENA]
¡û
>W1710624328
JOMO01000005
Alphaproteobacteria
Acetobacter orientalis [JOMO]
25383
25308
-
Phe
GAA
[ENA]
¡û
>W1710624401
JOMP01000020
Alphaproteobacteria
Acetobacter indonesiensis [JOMP]
14888
14813
-
Phe
GAA
[ENA]
¡û
>W1710624431
JOMQ01000030
Alphaproteobacteria
Acetobacter cibinongensis DsW_47 [JOMQ]
25754
25679
-
Phe
GAA
[ENA]
¡û
>W1710624464
JOOY01000020
Alphaproteobacteria
Acetobacter orientalis [JOOY]
9154
9229
+
Phe
GAA
[ENA]
¡û
>W1710624538
JOPA01000004
Alphaproteobacteria
Acetobacter indonesiensis [JOPA]
24780
24705
-
Phe
GAA
[ENA]
¡û
>W1710624651
JOPC01000029
Alphaproteobacteria
Acetobacter persici [JOPC]
6023
5948
-
Phe
GAA
[ENA]
¡û
>W1710624694
JOPD01000017
Alphaproteobacteria
Acetobacter sp. DsW_54 [JOPD]
143630
143555
-
Phe
GAA
[ENA]
¡û
>W1710624758
JOPG01000007
Alphaproteobacteria
Acetobacter malorum [JOPG]
153232
153157
-
Phe
GAA
[ENA]
¡û
>W1710624795
JOPH01000004
Alphaproteobacteria
Gluconobacter sp. DsW_058 [JOPH]
89464
89539
+
Phe
GAA
[ENA]
¡û
>W1710624874
JOPJ01000003
Alphaproteobacteria
Acetobacter okinawensis [JOPJ]
23651
23726
+
Phe
GAA
[ENA]
¡û
>W1710624941
JOPK01000042
Alphaproteobacteria
Acetobacter orientalis [JOPK]
84369
84444
+
Phe
GAA
[ENA]
¡û
>W1710755096
LHZA01000156
Alphaproteobacteria
Acetobacter cerevisiae [LHZA]
153110
153185
+
Phe
GAA
[ENA]
¡û
>W1710755200
LHZC01000050
Alphaproteobacteria
Acetobacter malorum [LHZC]
48109
48184
+
Phe
GAA
[ENA]
¡û
>W1710755355
LHZF01000173
Alphaproteobacteria
Acetobacter malorum [LHZF]
34299
34224
-
Phe
GAA
[ENA]
¡û
>W1710755426
LHZH01000119
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
35121
35196
+
Phe
GAA
[ENA]
¡û
>W1710755469
LHZI01001462
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
3575
3650
+
Phe
GAA
[ENA]
¡û
>W1710755519
LHZJ01000077
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
73610
73535
-
Phe
GAA
[ENA]
¡û
>W1710755576
LHZK01000125
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
88409
88334
-
Phe
GAA
[ENA]
¡û
>W1710755660
LHZM01000083
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
73514
73589
+
Phe
GAA
[ENA]
¡û
>W1710755747
LHZO01000059
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
92014
91939
-
Phe
GAA
[ENA]
¡û
>W1710755925
LHZS01000096
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
20336
20411
+
Phe
GAA
[ENA]
¡û
>W1710756075
LHZV01000065
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
141928
141853
-
Phe
GAA
[ENA]
¡û
>W1710756160
LHZX01000308
Alphaproteobacteria
Acetobacter malorum [LHZX]
50832
50757
-
Phe
GAA
[ENA]
¡û
>W1710756215
LHZY01000050
Alphaproteobacteria
Acetobacter cerevisiae [LHZY]
383
308
-
Phe
GAA
[ENA]
¡û
>W1710756240
LHZZ01000555
Alphaproteobacteria
Acetobacter malorum [LHZZ]
1323
1248
-
Phe
GAA
[ENA]
¡û
>W1710756268
LIAA01000005
Alphaproteobacteria
Acetobacter cerevisiae [LIAA]
66414
66339
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK