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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282633 (120 seq.)
>W1710813585
LKJQ01000045
Gammaproteobacteria
Aeromonas veronii [LKJQ]
42190
42265
+
Thr
CGT
[ENA]
¡û
>W1710814120
LKJV01000056
Gammaproteobacteria
Aeromonas veronii [LKJV]
42517
42592
+
Thr
CGT
[ENA]
¡û
>W1710814235
LKJW01000063
Gammaproteobacteria
Aeromonas veronii [LKJW]
44719
44794
+
Thr
CGT
[ENA]
¡û
>W1710814250
LKJX01000004
Gammaproteobacteria
Aeromonas veronii [LKJX]
52830
52905
+
Thr
CGT
[ENA]
¡û
>W1710814450
LKJY01000068
Gammaproteobacteria
Aeromonas veronii [LKJY]
42244
42319
+
Thr
CGT
[ENA]
¡û
>W1710814537
LKKA01000001
Gammaproteobacteria
Aeromonas veronii [LKKA]
149148
149073
-
Thr
CGT
[ENA]
¡û
>W1710814745
LKKB01000058
Gammaproteobacteria
Aeromonas veronii [LKKB]
44713
44788
+
Thr
CGT
[ENA]
¡û
>W1710814809
LKKC01000022
Gammaproteobacteria
Aeromonas veronii [LKKC]
42202
42277
+
Thr
CGT
[ENA]
¡û
>W1710814954
LKKD01000047
Gammaproteobacteria
Aeromonas veronii [LKKD]
52777
52852
+
Thr
CGT
[ENA]
¡û
>W1710814969
LKKE01000001
Gammaproteobacteria
Aeromonas veronii [LKKE]
171131
171056
-
Thr
CGT
[ENA]
¡û
>W1710815078
LKKF01000001
Gammaproteobacteria
Aeromonas veronii [LKKF]
171131
171056
-
Thr
CGT
[ENA]
¡û
>W1710815188
LKKG01000001
Gammaproteobacteria
Aeromonas veronii [LKKG]
42903
42828
-
Thr
CGT
[ENA]
¡û
>W1710815330
LKKH01000011
Gammaproteobacteria
Aeromonas veronii [LKKH]
52824
52899
+
Thr
CGT
[ENA]
¡û
>W1710815433
LKKI01000013
Gammaproteobacteria
Aeromonas allosaccharophila [LKKI]
276669
276744
+
Thr
CGT
[ENA]
¡û
>W1711025146
LRBO01000001
Gammaproteobacteria
Aeromonas veronii [LRBO]
427332
427407
+
Thr
CGT
[ENA]
¡û
>W1711212671
LXJN01000515
Gammaproteobacteria
Aeromonas veronii [LXJN]
2545
2620
+
Thr
CGT
[ENA]
¡û
>W1711256346
LYSQ01000019
Gammaproteobacteria
Aeromonas sp. DNP9 [LYSQ]
102005
102080
+
Thr
CGT
[ENA]
¡û
>W131043946
AMQA01000002
Gammaproteobacteria
Aeromonas hydrophila SNUFPC-A8 [AMQA]
14992
15067
+
Thr
CGT
[ENA]
¡û
>W1711660834
MQSY01000046
Gammaproteobacteria
Aeromonas sp. YN13HZO-058 [MQSY]
34784
34859
+
Thr
CGT
[ENA]
¡û
>W1711678555
MRUI01000001
Gammaproteobacteria
Aeromonas veronii [MRUI]
754625
754700
+
Thr
CGT
[ENA]
¡û
>W1711683945
MRZP01000034
Gammaproteobacteria
Aeromonas allosaccharophila [MRZP]
1004
929
-
Thr
CGT
[ENA]
¡û
>W1711684085
MRZR01000001
Gammaproteobacteria
Aeromonas veronii bv. veronii [MRZR]
370074
369999
-
Thr
CGT
[ENA]
¡û
>C171121072
CP021654
Gammaproteobacteria
Aeromonas salmonicida O23A [CP021654]
532454
532379
-
Thr
CGT
-
¡û
>W141007084
AGWT01000006
Gammaproteobacteria
Aeromonas veronii AER39 [AGWT]
284269
284194
-
Thr
CGT
[ENA]
¡û
>W141007209
AGWU01000018
Gammaproteobacteria
Aeromonas veronii AMC34 [AGWU]
164203
164278
+
Thr
CGT
[ENA]
¡û
>W141007302
AGWV01000008
Gammaproteobacteria
Aeromonas veronii AER397 [AGWV]
484441
484366
-
Thr
CGT
[ENA]
¡û
>WENV180310531
OBJT01002772
[OBJT] soil metagenome; soil
3492
3417
-
Thr
CGT
[ENA]
¢þ
>W141053486
ANNT01001010
Gammaproteobacteria
Aeromonas veronii PhIn2 [ANNT]
4908
4833
-
Thr
CGT
[ENA]
¡û
>W141077762
ATFB01000020
Gammaproteobacteria
Aeromonas veronii Hm21 [ATFB]
416781
416856
+
Thr
CGT
[ENA]
¡û
>WENV181193427
OEQM01000316
[OEQM] metagenome; water of meat washing
1292
1217
-
Thr
CGT
[ENA]
¢þ
>WENV181193536
OEQN01000129
[OEQN] metagenome; water of meat washing
6346
6271
-
Thr
CGT
[ENA]
¢þ
>WENV181193790
OEQO01001038
[OEQO] metagenome; water of meat washing
530
605
+
Thr
CGT
[ENA]
¢þ
>WENV181195412
OEQT01000201
[OEQT] metagenome; water of meat washing
6842
6767
-
Thr
CGT
[ENA]
¢þ
>WENV181195825
OEQV01000174
[OEQV] metagenome; water of meat washing
9421
9496
+
Thr
CGT
[ENA]
¢þ
>WENV181196342
OEQX01000340
[OEQX] metagenome; water of meat washing
85
10
-
Thr
CGT
[ENA]
¢þ
>WENV181198189
OERD01000450
[OERD] metagenome; water of meat washing
148
73
-
Thr
CGT
[ENA]
¢þ
>WENV181199486
OERH01002543
[OERH] metagenome; water of meat washing
2295
2370
+
Thr
CGT
[ENA]
¢þ
>WENV181200057
OERJ01000297
[OERJ] metagenome; water of meat washing
85
10
-
Thr
CGT
[ENA]
¢þ
>WENV181200337
OERK01000396
[OERK] metagenome; water of meat washing
200
125
-
Thr
CGT
[ENA]
¢þ
>WENV181201033
OERM01000416
[OERM] metagenome; water of meat washing
11111
11186
+
Thr
CGT
[ENA]
¢þ
>WENV181201255
OERN01000105
[OERN] metagenome; water of meat washing
9780
9855
+
Thr
CGT
[ENA]
¢þ
>WENV181201479
OERO01000614
[OERO] metagenome; water of meat washing
4559
4634
+
Thr
CGT
[ENA]
¢þ
>WENV181203052
OERT01000581
[OERT] metagenome; water of meat washing
4101
4176
+
Thr
CGT
[ENA]
¢þ
>WENV181203305
OERV01000335
[OERV] metagenome; water of meat washing
1924
1849
-
Thr
CGT
[ENA]
¢þ
>WENV181471361
OGEW01001845
[OGEW] metagenome; Human gut stool
3607
3682
+
Thr
CGT
[ENA]
¢þ
>WENV181483789
OGFK01035821
[OGFK] metagenome; Human gut stool
582
507
-
Thr
CGT
[ENA]
¢þ
>WENV181510393
OGGR01000003
[OGGR] metagenome; Human gut stool
181328
181403
+
Thr
CGT
[ENA]
¢þ
>W141235289
BAXY01000026
Gammaproteobacteria
Aeromonas hydrophila [BAXY]
41376
41301
-
Thr
CGT
[ENA]
¡û
>WENV183023727
OLFS01003522
[OLFS] human gut metagenome; faeces
7907
7832
-
Thr
CGT
[ENA]
¢þ
>W141403265
JDWC01000040
Gammaproteobacteria
Aeromonas hydrophila [JDWC]
14986
15061
+
Thr
CGT
[ENA]
¡û
>W141455478
JFDL01000003
Gammaproteobacteria
Aeromonas jandaei Riv2 [JFDL]
385455
385380
-
Thr
CGT
[ENA]
¡û
>C181129461
CP026226
Gammaproteobacteria
Aeromonas sp. ASNIH7 [CP026226]
477910
477985
+
Thr
CGT
-
¡û
>C181133519
CP026406
Gammaproteobacteria
Aeromonas sp. ASNIH2 [CP026406]
622176
622251
+
Thr
CGT
-
¡û
>C191006764
AP019193
Gammaproteobacteria
Aeromonas hydrophila GSH8-2 [AP019193]
3548409
3548484
+
Thr
CGT
-
¡û
>C191056373
CP028133
Gammaproteobacteria
Aeromonas veronii 17ISAe [CP028133]
205463
205538
+
Thr
CGT
-
¡û
>C191095354
CP032839
Gammaproteobacteria
Aeromonas veronii FC951 [CP032839]
1347196
1347271
+
Thr
CGT
-
¡û
>W141790553
JOVP01000029
Gammaproteobacteria
Aeromonas caviae [JOVP]
390987
391062
+
Thr
CGT
[ENA]
¡û
>W1910941967
NJGB01000025
Gammaproteobacteria
Aeromonas veronii A29 [NJGB]
314124
314049
-
Thr
CGT
[ENA]
¡û
>W1911075600
NMUR01000014
Gammaproteobacteria
Aeromonas veronii NS [NMUR]
49198
49273
+
Thr
CGT
[ENA]
¡û
>W1911075706
NMUS01000015
Gammaproteobacteria
Aeromonas veronii PDB [NMUS]
42573
42498
-
Thr
CGT
[ENA]
¡û
>W1911085227
NNSE01000040
Gammaproteobacteria
Aeromonas veronii 5.28.6 [NNSE]
44548
44623
+
Thr
CGT
[ENA]
¡û
>W1911085319
NNSF01000039
Gammaproteobacteria
Aeromonas veronii VCK [NNSF]
44460
44535
+
Thr
CGT
[ENA]
¡û
>W1911155574
NPKC01000016
Gammaproteobacteria
Aeromonas veronii 6.15.2 [NPKC]
49198
49273
+
Thr
CGT
[ENA]
¡û
>W1911155704
NPKD01000038
Gammaproteobacteria
Aeromonas veronii 50A [NPKD]
44561
44636
+
Thr
CGT
[ENA]
¡û
>W1911155787
NPKE01000013
Gammaproteobacteria
Aeromonas veronii NS2 [NPKE]
42537
42462
-
Thr
CGT
[ENA]
¡û
>W1911420318
NXBQ01000001
Gammaproteobacteria
Aeromonas bivalvium ZJ19-2 [NXBQ]
425063
424988
-
Thr
CGT
[ENA]
¡û
>W1911420520
NXBS01000002
Gammaproteobacteria
Aeromonas allosaccharophila Z9-6 [NXBS]
23255
23330
+
Thr
CGT
[ENA]
¡û
>W1911420761
NXBU01000021
Gammaproteobacteria
Aeromonas veronii Z2-7 [NXBU]
24829
24754
-
Thr
CGT
[ENA]
¡û
>W1911420928
NXBW01000055
Gammaproteobacteria
Aeromonas caviae ZJ33-3 [NXBW]
1173
1248
+
Thr
CGT
[ENA]
¡û
>W1911421113
NXBY01000016
Gammaproteobacteria
Aeromonas veronii ZJ12-3 [NXBY]
29752
29677
-
Thr
CGT
[ENA]
¡û
>W1911630520
PSZK01000004
Gammaproteobacteria
Aeromonas salmonicida 947C [PSZK]
255219
255294
+
Thr
CGT
[ENA]
¡û
>W1911683288
QKOS01000133
Gammaproteobacteria
Aeromonas caviae GEO_48_Eff_A [QKOS]
2690
2615
-
Thr
CGT
[ENA]
¡û
>W1911684527
QKPH01000023
Gammaproteobacteria
Aeromonas caviae GEO_23_Down_B [QKPH]
13000
12925
-
Thr
CGT
[ENA]
¡û
>W1810196073
PKSR01000055
Gammaproteobacteria
Aeromonas veronii FC951 [PKSR]
17759
17834
+
Thr
CGT
[ENA]
¡û
>W1810240252
PPTE01000048
Gammaproteobacteria
Aeromonas veronii 126-14 [PPTE]
16914
16989
+
Thr
CGT
[ENA]
¡û
>W1810242206
PPUW01000004
Gammaproteobacteria
Aeromonas veronii ML09-123 [PPUW]
391719
391644
-
Thr
CGT
[ENA]
¡û
>W1810268283
PRCV01000001
Gammaproteobacteria
Aeromonas jandaei IMET J [PRCV]
420723
420798
+
Thr
CGT
[ENA]
¡û
>W1810390604
PXYZ01000002
Gammaproteobacteria
Aeromonas veronii ZWY-AV1 [PXYZ]
199378
199303
-
Thr
CGT
[ENA]
¡û
>W1810445457
PZKL01000057
Gammaproteobacteria
Aeromonas veronii XH.VA.1 [PZKL]
16651
16726
+
Thr
CGT
[ENA]
¡û
>W1810474236
QAIE01000052
Gammaproteobacteria
Aeromonas sp. HMWF036 [QAIE]
13548
13623
+
Thr
CGT
[ENA]
¡û
>W1810474868
QAIO01000367
Gammaproteobacteria
Aeromonas sp. HMWF015 [QAIO]
37048
37123
+
Thr
CGT
[ENA]
¡û
>W1810475570
QAJD01000027
Gammaproteobacteria
Aeromonas sp. HMWF017 [QAJD]
10770
10695
-
Thr
CGT
[ENA]
¡û
>W1810779975
QQOQ01000008
Gammaproteobacteria
Aeromonas veronii XH.VA.2 [QQOQ]
241021
240946
-
Thr
CGT
[ENA]
¡û
>C151076727
CP011100
Gammaproteobacteria
Aeromonas hydrophila AH10 [CP011100]
3553456
3553531
+
Thr
CGT
[Ensembl]
¡û
>W1510065475
CDBQ01000053
Gammaproteobacteria
Aeromonas veronii bv. sobria LMG 13067 [CDBQ]
4801
4726
-
Thr
CGT
[ENA]
¡û
>W1510065540
CDBR01000080
Gammaproteobacteria
Aeromonas allosaccharophila CECT 4199 [CDBR]
10330
10405
+
Thr
CGT
[ENA]
¡û
>W1510065880
CDBV01000027
Gammaproteobacteria
Aeromonas jandaei CECT 4228 [CDBV]
371802
371727
-
Thr
CGT
[ENA]
¡û
>W1510067982
CDDH01000028
Gammaproteobacteria
Aeromonas australiensis CECT 8023 [CDDH]
107739
107664
-
Thr
CGT
[ENA]
¡û
>W1510068210
CDDK01000018
Gammaproteobacteria
Aeromonas veronii bv. veronii CECT 4257 [CDDK]
408409
408484
+
Thr
CGT
[ENA]
¡û
>W1510068633
CDDU01000002
Gammaproteobacteria
Aeromonas veronii CIP 107763 [CDDU]
112785
112710
-
Thr
CGT
[ENA]
¡û
>C11101419
CP002607
Gammaproteobacteria
Aeromonas veronii B565 [CP002607]
1304804
1304879
+
Thr
CGT
[Ensembl]
¡û
>W1510756320
JABY01000004
Gammaproteobacteria
Edwardsiella anguillarum ET070829 [JABY]
276468
276543
+
Thr
CGT
[ENA]
¡û
>W1510756755
JACP01000007
Gammaproteobacteria
Edwardsiella anguillarum ET081126R [JACP]
41273
41198
-
Thr
CGT
[ENA]
¡û
>W1511345514
JRGM01000022
Gammaproteobacteria
Aeromonas lacus AE122 [JRGM]
12563
12488
-
Thr
CGT
[ENA]
¡û
>W1511347812
JRJY01000004
Gammaproteobacteria
Aeromonas sp. ZOR0001 [JRJY]
75
1
-
Thr
CGT
[ENA]
¡û
>W1511388410
JSWA01000102
Gammaproteobacteria
Aeromonas hydrophila M023 [JSWA]
12725
12800
+
Thr
CGT
[ENA]
¡û
>W1511504949
JXIR01000025
Gammaproteobacteria
Aeromonas sp. L_1B5_3 [JXIR]
94537
94612
+
Thr
CGT
[ENA]
¡û
>C161042396
CP012504
Gammaproteobacteria
Aeromonas veronii TH0426 [CP012504]
2995297
2995222
-
Thr
CGT
[Ensembl]
¡û
>C161077249
CP014774
Gammaproteobacteria
Aeromonas veronii AVNIH1 [CP014774]
4165336
4165411
+
Thr
CGT
[Ensembl]
¡û
>C161096976
CP016392
Gammaproteobacteria
Aeromonas hydrophila GYK1 [CP016392]
3462948
3463023
+
Thr
CGT
-
¡û
>W1610677682
LKJQ01000045
Gammaproteobacteria
Aeromonas veronii [LKJQ]
42190
42265
+
Thr
CGT
[ENA]
¡û
>W1610678217
LKJV01000056
Gammaproteobacteria
Aeromonas veronii [LKJV]
42517
42592
+
Thr
CGT
[ENA]
¡û
>W1610678332
LKJW01000063
Gammaproteobacteria
Aeromonas veronii [LKJW]
44719
44794
+
Thr
CGT
[ENA]
¡û
>W1610678347
LKJX01000004
Gammaproteobacteria
Aeromonas veronii [LKJX]
52830
52905
+
Thr
CGT
[ENA]
¡û
>W1610678547
LKJY01000068
Gammaproteobacteria
Aeromonas veronii [LKJY]
42244
42319
+
Thr
CGT
[ENA]
¡û
>W1610678634
LKKA01000001
Gammaproteobacteria
Aeromonas veronii [LKKA]
149148
149073
-
Thr
CGT
[ENA]
¡û
>W1610678842
LKKB01000058
Gammaproteobacteria
Aeromonas veronii [LKKB]
44713
44788
+
Thr
CGT
[ENA]
¡û
>W1610678906
LKKC01000022
Gammaproteobacteria
Aeromonas veronii [LKKC]
42202
42277
+
Thr
CGT
[ENA]
¡û
>W1610679051
LKKD01000047
Gammaproteobacteria
Aeromonas veronii [LKKD]
52777
52852
+
Thr
CGT
[ENA]
¡û
>W1610679066
LKKE01000001
Gammaproteobacteria
Aeromonas veronii [LKKE]
171131
171056
-
Thr
CGT
[ENA]
¡û
>W1610679175
LKKF01000001
Gammaproteobacteria
Aeromonas veronii [LKKF]
171131
171056
-
Thr
CGT
[ENA]
¡û
>W1610679285
LKKG01000001
Gammaproteobacteria
Aeromonas veronii [LKKG]
42903
42828
-
Thr
CGT
[ENA]
¡û
>W1610679427
LKKH01000011
Gammaproteobacteria
Aeromonas veronii [LKKH]
52824
52899
+
Thr
CGT
[ENA]
¡û
>W1610679530
LKKI01000013
Gammaproteobacteria
Aeromonas allosaccharophila [LKKI]
276669
276744
+
Thr
CGT
[ENA]
¡û
>W1610873258
LRBO01000001
Gammaproteobacteria
Aeromonas veronii [LRBO]
427332
427407
+
Thr
CGT
[ENA]
¡û
>W1610999926
LXJN01000515
Gammaproteobacteria
Aeromonas veronii [LXJN]
2545
2620
+
Thr
CGT
[ENA]
¡û
>W1730002897
BDGY01000031
Gammaproteobacteria
Aeromonas veronii [BDGY]
1790
1715
-
Thr
CGT
[ENA]
¡û
>W1730023446
LXJO01000028
Gammaproteobacteria
Aeromonas caviae [LXJO]
1763
1688
-
Thr
CGT
[ENA]
¡û
>W1710596826
FTMU01000071
Gammaproteobacteria
Aeromonas veronii [FTMU]
1184
1259
+
Thr
CGT
[ENA]
¡û
>W1710718182
LFCS01000003
Gammaproteobacteria
Aeromonas sp. SCS5 [LFCS]
162949
163024
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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