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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282671 (97 seq.)
>W1711014067
LQTY01000160
Gammaproteobacteria
Escherichia coli [LQTY]
29445
29369
-
Arg
TCG
[ENA]
¡û
>W1711014499
LQUG01000132
Gammaproteobacteria
Escherichia coli [LQUG]
68
144
+
Arg
TCG
[ENA]
¡û
>W1711056222
LRVN01000081
Gammaproteobacteria
Escherichia coli [LRVN]
217483
217559
+
Arg
TCG
[ENA]
¡û
>W1711057310
LRWC01000093
Gammaproteobacteria
Escherichia coli [LRWC]
217489
217565
+
Arg
TCG
[ENA]
¡û
>W1711057483
LRWE01000074
Gammaproteobacteria
Escherichia coli [LRWE]
412196
412120
-
Arg
TCG
[ENA]
¡û
>W1711057866
LRWJ01000048
Gammaproteobacteria
Escherichia coli [LRWJ]
217480
217556
+
Arg
TCG
[ENA]
¡û
>W1711058093
LRWM01000055
Gammaproteobacteria
Escherichia coli [LRWM]
29561
29485
-
Arg
TCG
[ENA]
¡û
>W1711079245
LSNY01000170
Gammaproteobacteria
Escherichia coli [LSNY]
2349
2273
-
Arg
TCG
[ENA]
¡û
>W1711082727
LSUP01000001
Gammaproteobacteria
Escherichia coli [LSUP]
1238982
1239058
+
Arg
TCG
[ENA]
¡û
>W1711235876
LYDK01000019
Gammaproteobacteria
Escherichia coli [LYDK]
3239
3315
+
Arg
TCG
[ENA]
¡û
>W1711614026
MOYT01000005
Gammaproteobacteria
Escherichia coli [MOYT]
29560
29484
-
Arg
TCG
[ENA]
¡û
>W131075848
ANVH01000020
Gammaproteobacteria
Escherichia coli KTE6 [ANVH]
210942
211018
+
Arg
TCG
[ENA]
¡û
>W131076971
ANVX01000010
Gammaproteobacteria
Escherichia coli KTE63 [ANVX]
426020
426096
+
Arg
TCG
[ENA]
¡û
>C008514
AE014075
Gammaproteobacteria
Escherichia coli CFT073 [AE014075]
1342387
1342463
+
Arg
TCG
[Ensembl]
¡û
>WENV180139237
OATS01000306
[OATS] human gut metagenome; faeces
1001
925
-
Arg
TCG
[ENA]
¢þ
>WENV180418286
OBVJ01001533
[OBVJ] human gut metagenome; faeces
1001
925
-
Arg
TCG
[ENA]
¢þ
>WENV180419276
OBVM01000707
[OBVM] human gut metagenome; faeces
9208
9284
+
Arg
TCG
[ENA]
¢þ
>WENV180472766
OBYQ01001776
[OBYQ] human gut metagenome; faeces
6005
6081
+
Arg
TCG
[ENA]
¢þ
>W141112408
AVTD01000011
Gammaproteobacteria
Escherichia coli HVH 7 (4-7315031) [AVTD]
109779
109855
+
Arg
TCG
[ENA]
¡û
>W141113816
AVTW01000014
Gammaproteobacteria
Escherichia coli HVH 31 (4-2602156) [AVTW]
102918
102994
+
Arg
TCG
[ENA]
¡û
>W141115498
AVUP01000008
Gammaproteobacteria
Escherichia coli HVH 58 (4-2839709) [AVUP]
103833
103909
+
Arg
TCG
[ENA]
¡û
>W141115710
AVUR01000029
Gammaproteobacteria
Escherichia coli HVH 61 (4-2736020) [AVUR]
10663
10587
-
Arg
TCG
[ENA]
¡û
>W141116365
AVVA01000017
Gammaproteobacteria
Escherichia coli HVH 77 (4-2605759) [AVVA]
119215
119139
-
Arg
TCG
[ENA]
¡û
>W141117171
AVVK01000005
Gammaproteobacteria
Escherichia coli HVH 89 (4-5885604) [AVVK]
155234
155310
+
Arg
TCG
[ENA]
¡û
>W141117254
AVVL01000010
Gammaproteobacteria
Escherichia coli HVH 90 (4-3191362) [AVVL]
105845
105921
+
Arg
TCG
[ENA]
¡û
>W141121455
AVXN01000104
Gammaproteobacteria
Escherichia coli HVH 154 (4-5636698) [AVXN]
12235
12311
+
Arg
TCG
[ENA]
¡û
>W141121847
AVXT01000008
Gammaproteobacteria
Escherichia coli HVH 160 (4-5695937) [AVXT]
102523
102599
+
Arg
TCG
[ENA]
¡û
>W141121943
AVXU01000007
Gammaproteobacteria
Escherichia coli HVH 161 (4-3119890) [AVXU]
7122
7198
+
Arg
TCG
[ENA]
¡û
>W141122318
AVXZ01000011
Gammaproteobacteria
Escherichia coli HVH 169 (4-1075578) [AVXZ]
101939
102015
+
Arg
TCG
[ENA]
¡û
>W141124579
AVZC01000015
Gammaproteobacteria
Escherichia coli HVH 202 (4-3163997) [AVZC]
3309
3385
+
Arg
TCG
[ENA]
¡û
>WENV181326789
OFLN01000102
[OFLN] metagenome; faeces
45327
45403
+
Arg
TCG
[ENA]
¢þ
>W141131643
AWCQ01000009
Gammaproteobacteria
Escherichia coli UMEA 3220-1 [AWCQ]
103548
103624
+
Arg
TCG
[ENA]
¡û
>W141134582
AWEC01000009
Gammaproteobacteria
Escherichia coli UMEA 3707-1 [AWEC]
103518
103594
+
Arg
TCG
[ENA]
¡û
>WENV182424102
OIHD01000703
[OIHD] human gut metagenome; human gut
819
743
-
Arg
TCG
[ENA]
¢þ
>WENV182427424
OIHV01003713
[OIHV] human gut metagenome; human gut
624
548
-
Arg
TCG
[ENA]
¢þ
>WENV182501270
OIUB01004819
[OIUB] human gut metagenome; human gut
85
161
+
Arg
TCG
[ENA]
¢þ
>WENV182974267
OKXP01006335
[OKXP] human gut metagenome; human gut
246
322
+
Arg
TCG
[ENA]
¢þ
>WENV182978804
OKYJ01000976
[OKYJ] human gut metagenome; human gut
625
701
+
Arg
TCG
[ENA]
¢þ
>WENV182979844
OKYO01000748
[OKYO] human gut metagenome; human gut
460
536
+
Arg
TCG
[ENA]
¢þ
>WENV182980637
OKYS01001950
[OKYS] human gut metagenome; human gut
497
573
+
Arg
TCG
[ENA]
¢þ
>WENV182983543
OKZH01000928
[OKZH] human gut metagenome; human gut
461
385
-
Arg
TCG
[ENA]
¢þ
>WENV183021315
OLFK01004516
[OLFK] human gut metagenome; human gut
448
524
+
Arg
TCG
[ENA]
¢þ
>WENV183035278
OLFZ01003187
[OLFZ] human gut metagenome; faeces
6291
6367
+
Arg
TCG
[ENA]
¢þ
>WENV183051071
OLGI01008136
[OLGI] human gut metagenome; faeces
68
144
+
Arg
TCG
[ENA]
¢þ
>WENV183108340
OLNN01000064
[OLNN] human gut metagenome; faeces
101206
101282
+
Arg
TCG
[ENA]
¢þ
>WENV183145096
OLOL01032612
[OLOL] human gut metagenome; faeces
1043
967
-
Arg
TCG
[ENA]
¢þ
>WENV183416883
OMAS01016429
[OMAS] human gut metagenome; feces
751
827
+
Arg
TCG
[ENA]
¢þ
>WENV183459776
OMDO01003899
[OMDO] human gut metagenome; feces
3746
3822
+
Arg
TCG
[ENA]
¢þ
>C181192655
CP030778
Gammaproteobacteria
Escherichia albertii 05-3106 [CP030778]
4640854
4640930
+
Arg
TCG
-
¡û
>C191004980
AP018784
Gammaproteobacteria
Escherichia coli SK1144 [AP018784]
2087789
2087865
+
Arg
TCG
-
¡û
>C191056945
CP028320
Gammaproteobacteria
Escherichia coli O18:H1 CFSAN067215 [CP028320]
2130521
2130597
+
Arg
TCG
-
¡û
>W141746225
JNQS01000001
Gammaproteobacteria
Escherichia coli 2-316-03_S4_C1 [JNQS]
534108
534032
-
Arg
TCG
[ENA]
¡û
>W1910078400
BFLF01000001
Gammaproteobacteria
Escherichia coli HUST159 [BFLF]
12616
12540
-
Arg
TCG
[ENA]
¡û
>W1910087212
BFPW01000028
Gammaproteobacteria
Escherichia coli JML110 [BFPW]
105820
105896
+
Arg
TCG
[ENA]
¡û
>W1910089357
BFQZ01000127
Gammaproteobacteria
Escherichia coli JML145 [BFQZ]
29604
29528
-
Arg
TCG
[ENA]
¡û
>W1910090010
BFRJ01000003
Gammaproteobacteria
Escherichia coli JML156 [BFRJ]
39967
39891
-
Arg
TCG
[ENA]
¡û
>W1910603752
LENW01000013
Gammaproteobacteria
Escherichia coli 125-1609 [LENW]
8605
8681
+
Arg
TCG
[ENA]
¡û
>W1910603807
LENX01000003
Gammaproteobacteria
Escherichia coli 125-1642 [LENX]
390370
390446
+
Arg
TCG
[ENA]
¡û
>W1910604103
LEOB01000006
Gammaproteobacteria
Escherichia coli 151-1921 [LEOB]
210985
211061
+
Arg
TCG
[ENA]
¡û
>W1910604695
LEOJ01000005
Gammaproteobacteria
Escherichia coli 34-481 [LEOJ]
172269
172345
+
Arg
TCG
[ENA]
¡û
>W1910665916
MCJL01000040
Gammaproteobacteria
Escherichia coli HE-MDREc05 [MCJL]
27794
27718
-
Arg
TCG
[ENA]
¡û
>W1910893569
NFSY01000003
Gammaproteobacteria
Escherichia coli CVAST1050 [NFSY]
286326
286402
+
Arg
TCG
[ENA]
¡û
>W1910893651
NFSZ01000003
Gammaproteobacteria
Escherichia coli CVAST2813 [NFSZ]
286626
286702
+
Arg
TCG
[ENA]
¡û
>W1910893864
NFTB01000048
Gammaproteobacteria
Escherichia coli CVAST1106 [NFTB]
21161
21085
-
Arg
TCG
[ENA]
¡û
>W1910947277
NJKQ01000016
Gammaproteobacteria
Escherichia coli MOD1-EC695 [NJKQ]
8354
8278
-
Arg
TCG
[ENA]
¡û
>W1910948018
NJLA01000047
Gammaproteobacteria
Escherichia coli MOD1-EC675 [NJLA]
7916
7840
-
Arg
TCG
[ENA]
¡û
>W1910952703
NJNL01000006
Gammaproteobacteria
Escherichia coli MOD1-EC692 [NJNL]
8354
8278
-
Arg
TCG
[ENA]
¡û
>W1910970295
NJZO01000084
Gammaproteobacteria
Escherichia coli MOD1-EC1557 [NJZO]
3242
3318
+
Arg
TCG
[ENA]
¡û
>W1910973217
NKDQ01000040
Gammaproteobacteria
Escherichia coli MOD1-EC714 [NKDQ]
11476
11552
+
Arg
TCG
[ENA]
¡û
>W1910973591
NKDW01000004
Gammaproteobacteria
Escherichia coli MOD1-EC680 [NKDW]
8354
8278
-
Arg
TCG
[ENA]
¡û
>W1911031596
NLUX01000084
Gammaproteobacteria
Escherichia coli MOD1-EC5001 [NLUX]
1308
1232
-
Arg
TCG
[ENA]
¡û
>W1911427029
NXIR01000018
Gammaproteobacteria
Escherichia coli ST-73:E053 [NXIR]
100844
100920
+
Arg
TCG
[ENA]
¡û
>W1911690291
QLKL01000019
Gammaproteobacteria
Escherichia coli LMR3065 [QLKL]
103757
103833
+
Arg
TCG
[ENA]
¡û
>W1810022001
BGRX01000035
Gammaproteobacteria
Escherichia coli TUM18588 [BGRX]
29610
29534
-
Arg
TCG
[ENA]
¡û
>W1810022904
BGSI01000019
Gammaproteobacteria
Escherichia coli TUM18599 [BGSI]
8404
8328
-
Arg
TCG
[ENA]
¡û
>W1810118524
PHQR01000017
Gammaproteobacteria
Escherichia coli K56-2 [PHQR]
8404
8328
-
Arg
TCG
[ENA]
¡û
>W1810749447
QOYP01000032
Gammaproteobacteria
Escherichia coli MOD1-ECOR56 [QOYP]
11476
11552
+
Arg
TCG
[ENA]
¡û
>W1510027451
CCBU01000189
Gammaproteobacteria
Escherichia coli [CCBU]
7015
7091
+
Arg
TCG
[ENA]
¡û
>W1510079915
CDRK01000139
Gammaproteobacteria
Escherichia coli 80B_L1 [CDRK]
13065
13141
+
Arg
TCG
[ENA]
¡û
>W10117348
ADTO01000048
Gammaproteobacteria
Escherichia coli MS 45-1 [ADTO]
4668
4744
+
Arg
TCG
[ENA]
¡û
>W1511377454
JSOQ01000054
Gammaproteobacteria
Escherichia coli upec-110 [JSOQ]
3513
3437
-
Arg
TCG
[ENA]
¡û
>W11122337
ADTO01000048
Gammaproteobacteria
Escherichia coli MS 45-1 [ADTO]
4668
4744
+
Arg
TCG
[ENA]
¡û
>W1511660676
LETW01000003
Gammaproteobacteria
Escherichia coli BWH59 [LETW]
390218
390294
+
Arg
TCG
[ENA]
¡û
>W1511690400
LFXT01000027
Gammaproteobacteria
Escherichia coli CR48 [LFXT]
105480
105556
+
Arg
TCG
[ENA]
¡û
>C121002115
CP002211
Gammaproteobacteria
Escherichia coli str. 'clone D i2' [CP002211]
1303144
1303220
+
Arg
TCG
[Ensembl]
¡û
>C121002203
CP002212
Gammaproteobacteria
Escherichia coli str. 'clone D i14' [CP002212]
1303144
1303220
+
Arg
TCG
[Ensembl]
¡û
>C161072838
CP014495
Gammaproteobacteria
Escherichia coli SaT040 [CP014495]
1274042
1274118
+
Arg
TCG
-
¡û
>C161073265
CP014522
Gammaproteobacteria
Escherichia coli ZH063 [CP014522]
1240229
1240305
+
Arg
TCG
-
¡û
>W1610862543
LQTY01000160
Gammaproteobacteria
Escherichia coli [LQTY]
29445
29369
-
Arg
TCG
[ENA]
¡û
>W1610862975
LQUG01000132
Gammaproteobacteria
Escherichia coli [LQUG]
68
144
+
Arg
TCG
[ENA]
¡û
>W1610897268
LRVN01000081
Gammaproteobacteria
Escherichia coli [LRVN]
217483
217559
+
Arg
TCG
[ENA]
¡û
>W1610898356
LRWC01000093
Gammaproteobacteria
Escherichia coli [LRWC]
217489
217565
+
Arg
TCG
[ENA]
¡û
>W1610898529
LRWE01000074
Gammaproteobacteria
Escherichia coli [LRWE]
412196
412120
-
Arg
TCG
[ENA]
¡û
>W1610898912
LRWJ01000048
Gammaproteobacteria
Escherichia coli [LRWJ]
217480
217556
+
Arg
TCG
[ENA]
¡û
>W1610899139
LRWM01000055
Gammaproteobacteria
Escherichia coli [LRWM]
29561
29485
-
Arg
TCG
[ENA]
¡û
>W1610918155
LSNY01000170
Gammaproteobacteria
Escherichia coli [LSNY]
2349
2273
-
Arg
TCG
[ENA]
¡û
>W1710001540
ADIX01000021
Gammaproteobacteria
Escherichia coli H378 [ADIX]
101782
101858
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK