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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282672 (92 seq.)
>W1711014068
LQTY01000160
Gammaproteobacteria
Escherichia coli [LQTY]
29355
29279
-
Arg
TCT
[ENA]
¡û
>W1711014500
LQUG01000132
Gammaproteobacteria
Escherichia coli [LQUG]
158
234
+
Arg
TCT
[ENA]
¡û
>W1711056223
LRVN01000081
Gammaproteobacteria
Escherichia coli [LRVN]
217573
217649
+
Arg
TCT
[ENA]
¡û
>W1711057311
LRWC01000093
Gammaproteobacteria
Escherichia coli [LRWC]
217579
217655
+
Arg
TCT
[ENA]
¡û
>W1711057484
LRWE01000074
Gammaproteobacteria
Escherichia coli [LRWE]
412106
412030
-
Arg
TCT
[ENA]
¡û
>W1711057867
LRWJ01000048
Gammaproteobacteria
Escherichia coli [LRWJ]
217570
217646
+
Arg
TCT
[ENA]
¡û
>W1711058094
LRWM01000055
Gammaproteobacteria
Escherichia coli [LRWM]
29471
29395
-
Arg
TCT
[ENA]
¡û
>W1711079246
LSNY01000170
Gammaproteobacteria
Escherichia coli [LSNY]
2259
2183
-
Arg
TCT
[ENA]
¡û
>W1711082728
LSUP01000001
Gammaproteobacteria
Escherichia coli [LSUP]
1239072
1239148
+
Arg
TCT
[ENA]
¡û
>W1711235877
LYDK01000019
Gammaproteobacteria
Escherichia coli [LYDK]
3329
3405
+
Arg
TCT
[ENA]
¡û
>W1711614027
MOYT01000005
Gammaproteobacteria
Escherichia coli [MOYT]
29470
29394
-
Arg
TCT
[ENA]
¡û
>W131075849
ANVH01000020
Gammaproteobacteria
Escherichia coli KTE6 [ANVH]
211032
211108
+
Arg
TCT
[ENA]
¡û
>W131076972
ANVX01000010
Gammaproteobacteria
Escherichia coli KTE63 [ANVX]
426110
426186
+
Arg
TCT
[ENA]
¡û
>C008515
AE014075
Gammaproteobacteria
Escherichia coli CFT073 [AE014075]
1342477
1342553
+
Arg
TCT
[Ensembl]
¡û
>WENV180139238
OATS01000306
[OATS] human gut metagenome; faeces
911
835
-
Arg
TCT
[ENA]
¢þ
>WENV180418287
OBVJ01001533
[OBVJ] human gut metagenome; faeces
911
835
-
Arg
TCT
[ENA]
¢þ
>WENV180472767
OBYQ01001776
[OBYQ] human gut metagenome; faeces
6095
6171
+
Arg
TCT
[ENA]
¢þ
>W141112409
AVTD01000011
Gammaproteobacteria
Escherichia coli HVH 7 (4-7315031) [AVTD]
109869
109945
+
Arg
TCT
[ENA]
¡û
>W141113817
AVTW01000014
Gammaproteobacteria
Escherichia coli HVH 31 (4-2602156) [AVTW]
103008
103084
+
Arg
TCT
[ENA]
¡û
>W141115499
AVUP01000008
Gammaproteobacteria
Escherichia coli HVH 58 (4-2839709) [AVUP]
103923
103999
+
Arg
TCT
[ENA]
¡û
>W141115711
AVUR01000029
Gammaproteobacteria
Escherichia coli HVH 61 (4-2736020) [AVUR]
10573
10497
-
Arg
TCT
[ENA]
¡û
>W141116366
AVVA01000017
Gammaproteobacteria
Escherichia coli HVH 77 (4-2605759) [AVVA]
119125
119049
-
Arg
TCT
[ENA]
¡û
>W141117172
AVVK01000005
Gammaproteobacteria
Escherichia coli HVH 89 (4-5885604) [AVVK]
155324
155400
+
Arg
TCT
[ENA]
¡û
>W141117255
AVVL01000010
Gammaproteobacteria
Escherichia coli HVH 90 (4-3191362) [AVVL]
105935
106011
+
Arg
TCT
[ENA]
¡û
>W141121456
AVXN01000104
Gammaproteobacteria
Escherichia coli HVH 154 (4-5636698) [AVXN]
12325
12401
+
Arg
TCT
[ENA]
¡û
>W141121848
AVXT01000008
Gammaproteobacteria
Escherichia coli HVH 160 (4-5695937) [AVXT]
102613
102689
+
Arg
TCT
[ENA]
¡û
>W141121944
AVXU01000007
Gammaproteobacteria
Escherichia coli HVH 161 (4-3119890) [AVXU]
7212
7288
+
Arg
TCT
[ENA]
¡û
>W141122319
AVXZ01000011
Gammaproteobacteria
Escherichia coli HVH 169 (4-1075578) [AVXZ]
102029
102105
+
Arg
TCT
[ENA]
¡û
>W141124580
AVZC01000015
Gammaproteobacteria
Escherichia coli HVH 202 (4-3163997) [AVZC]
3399
3475
+
Arg
TCT
[ENA]
¡û
>WENV181326790
OFLN01000102
[OFLN] metagenome; faeces
45417
45493
+
Arg
TCT
[ENA]
¢þ
>W141131644
AWCQ01000009
Gammaproteobacteria
Escherichia coli UMEA 3220-1 [AWCQ]
103638
103714
+
Arg
TCT
[ENA]
¡û
>W141134583
AWEC01000009
Gammaproteobacteria
Escherichia coli UMEA 3707-1 [AWEC]
103608
103684
+
Arg
TCT
[ENA]
¡û
>WENV182427933
OIHX01005641
[OIHX] human gut metagenome; human gut
31
107
+
Arg
TCT
[ENA]
¢þ
>WENV182501271
OIUB01004819
[OIUB] human gut metagenome; human gut
175
251
+
Arg
TCT
[ENA]
¢þ
>WENV182974268
OKXP01006335
[OKXP] human gut metagenome; human gut
336
412
+
Arg
TCT
[ENA]
¢þ
>WENV182983544
OKZH01000928
[OKZH] human gut metagenome; human gut
371
295
-
Arg
TCT
[ENA]
¢þ
>WENV183021316
OLFK01004516
[OLFK] human gut metagenome; human gut
538
614
+
Arg
TCT
[ENA]
¢þ
>WENV183035279
OLFZ01003187
[OLFZ] human gut metagenome; faeces
6381
6457
+
Arg
TCT
[ENA]
¢þ
>WENV183051072
OLGI01008136
[OLGI] human gut metagenome; faeces
158
234
+
Arg
TCT
[ENA]
¢þ
>WENV183108341
OLNN01000064
[OLNN] human gut metagenome; faeces
101296
101372
+
Arg
TCT
[ENA]
¢þ
>WENV183145097
OLOL01032612
[OLOL] human gut metagenome; faeces
953
877
-
Arg
TCT
[ENA]
¢þ
>WENV183416884
OMAS01016429
[OMAS] human gut metagenome; feces
841
917
+
Arg
TCT
[ENA]
¢þ
>WENV183459777
OMDO01003899
[OMDO] human gut metagenome; feces
3836
3912
+
Arg
TCT
[ENA]
¢þ
>C181192656
CP030778
Gammaproteobacteria
Escherichia albertii 05-3106 [CP030778]
4640944
4641020
+
Arg
TCT
-
¡û
>C191004981
AP018784
Gammaproteobacteria
Escherichia coli SK1144 [AP018784]
2087879
2087955
+
Arg
TCT
-
¡û
>C191056946
CP028320
Gammaproteobacteria
Escherichia coli O18:H1 CFSAN067215 [CP028320]
2130611
2130687
+
Arg
TCT
-
¡û
>W141746226
JNQS01000001
Gammaproteobacteria
Escherichia coli 2-316-03_S4_C1 [JNQS]
534018
533942
-
Arg
TCT
[ENA]
¡û
>W1910078401
BFLF01000001
Gammaproteobacteria
Escherichia coli HUST159 [BFLF]
12526
12450
-
Arg
TCT
[ENA]
¡û
>W1910087213
BFPW01000028
Gammaproteobacteria
Escherichia coli JML110 [BFPW]
105910
105986
+
Arg
TCT
[ENA]
¡û
>W1910089358
BFQZ01000127
Gammaproteobacteria
Escherichia coli JML145 [BFQZ]
29514
29438
-
Arg
TCT
[ENA]
¡û
>W1910090011
BFRJ01000003
Gammaproteobacteria
Escherichia coli JML156 [BFRJ]
39877
39801
-
Arg
TCT
[ENA]
¡û
>W1910603753
LENW01000013
Gammaproteobacteria
Escherichia coli 125-1609 [LENW]
8695
8771
+
Arg
TCT
[ENA]
¡û
>W1910603808
LENX01000003
Gammaproteobacteria
Escherichia coli 125-1642 [LENX]
390460
390536
+
Arg
TCT
[ENA]
¡û
>W1910604104
LEOB01000006
Gammaproteobacteria
Escherichia coli 151-1921 [LEOB]
211075
211151
+
Arg
TCT
[ENA]
¡û
>W1910604696
LEOJ01000005
Gammaproteobacteria
Escherichia coli 34-481 [LEOJ]
172359
172435
+
Arg
TCT
[ENA]
¡û
>W1910665917
MCJL01000040
Gammaproteobacteria
Escherichia coli HE-MDREc05 [MCJL]
27704
27628
-
Arg
TCT
[ENA]
¡û
>W1910893570
NFSY01000003
Gammaproteobacteria
Escherichia coli CVAST1050 [NFSY]
286416
286492
+
Arg
TCT
[ENA]
¡û
>W1910893652
NFSZ01000003
Gammaproteobacteria
Escherichia coli CVAST2813 [NFSZ]
286716
286792
+
Arg
TCT
[ENA]
¡û
>W1910893865
NFTB01000048
Gammaproteobacteria
Escherichia coli CVAST1106 [NFTB]
21071
20995
-
Arg
TCT
[ENA]
¡û
>W1910947278
NJKQ01000016
Gammaproteobacteria
Escherichia coli MOD1-EC695 [NJKQ]
8264
8188
-
Arg
TCT
[ENA]
¡û
>W1910948019
NJLA01000047
Gammaproteobacteria
Escherichia coli MOD1-EC675 [NJLA]
7826
7750
-
Arg
TCT
[ENA]
¡û
>W1910952704
NJNL01000006
Gammaproteobacteria
Escherichia coli MOD1-EC692 [NJNL]
8264
8188
-
Arg
TCT
[ENA]
¡û
>W1910970296
NJZO01000084
Gammaproteobacteria
Escherichia coli MOD1-EC1557 [NJZO]
3332
3408
+
Arg
TCT
[ENA]
¡û
>W1910973218
NKDQ01000040
Gammaproteobacteria
Escherichia coli MOD1-EC714 [NKDQ]
11566
11642
+
Arg
TCT
[ENA]
¡û
>W1910973592
NKDW01000004
Gammaproteobacteria
Escherichia coli MOD1-EC680 [NKDW]
8264
8188
-
Arg
TCT
[ENA]
¡û
>W1911031597
NLUX01000084
Gammaproteobacteria
Escherichia coli MOD1-EC5001 [NLUX]
1218
1142
-
Arg
TCT
[ENA]
¡û
>W1911427030
NXIR01000018
Gammaproteobacteria
Escherichia coli ST-73:E053 [NXIR]
100934
101010
+
Arg
TCT
[ENA]
¡û
>W1911690292
QLKL01000019
Gammaproteobacteria
Escherichia coli LMR3065 [QLKL]
103847
103923
+
Arg
TCT
[ENA]
¡û
>W1810022002
BGRX01000035
Gammaproteobacteria
Escherichia coli TUM18588 [BGRX]
29520
29444
-
Arg
TCT
[ENA]
¡û
>W1810022905
BGSI01000019
Gammaproteobacteria
Escherichia coli TUM18599 [BGSI]
8314
8238
-
Arg
TCT
[ENA]
¡û
>W1810118525
PHQR01000017
Gammaproteobacteria
Escherichia coli K56-2 [PHQR]
8314
8238
-
Arg
TCT
[ENA]
¡û
>W1810749448
QOYP01000032
Gammaproteobacteria
Escherichia coli MOD1-ECOR56 [QOYP]
11566
11642
+
Arg
TCT
[ENA]
¡û
>W1510027452
CCBU01000189
Gammaproteobacteria
Escherichia coli [CCBU]
7105
7181
+
Arg
TCT
[ENA]
¡û
>W1510079916
CDRK01000139
Gammaproteobacteria
Escherichia coli 80B_L1 [CDRK]
13155
13231
+
Arg
TCT
[ENA]
¡û
>W10117349
ADTO01000048
Gammaproteobacteria
Escherichia coli MS 45-1 [ADTO]
4758
4834
+
Arg
TCT
[ENA]
¡û
>W1511377455
JSOQ01000054
Gammaproteobacteria
Escherichia coli upec-110 [JSOQ]
3423
3347
-
Arg
TCT
[ENA]
¡û
>W11122338
ADTO01000048
Gammaproteobacteria
Escherichia coli MS 45-1 [ADTO]
4758
4834
+
Arg
TCT
[ENA]
¡û
>W1511660677
LETW01000003
Gammaproteobacteria
Escherichia coli BWH59 [LETW]
390308
390384
+
Arg
TCT
[ENA]
¡û
>W1511690401
LFXT01000027
Gammaproteobacteria
Escherichia coli CR48 [LFXT]
105570
105646
+
Arg
TCT
[ENA]
¡û
>C121002116
CP002211
Gammaproteobacteria
Escherichia coli str. 'clone D i2' [CP002211]
1303234
1303310
+
Arg
TCT
[Ensembl]
¡û
>C121002204
CP002212
Gammaproteobacteria
Escherichia coli str. 'clone D i14' [CP002212]
1303234
1303310
+
Arg
TCT
[Ensembl]
¡û
>C161072839
CP014495
Gammaproteobacteria
Escherichia coli SaT040 [CP014495]
1274132
1274208
+
Arg
TCT
-
¡û
>C161073266
CP014522
Gammaproteobacteria
Escherichia coli ZH063 [CP014522]
1240319
1240395
+
Arg
TCT
-
¡û
>W1610862544
LQTY01000160
Gammaproteobacteria
Escherichia coli [LQTY]
29355
29279
-
Arg
TCT
[ENA]
¡û
>W1610862976
LQUG01000132
Gammaproteobacteria
Escherichia coli [LQUG]
158
234
+
Arg
TCT
[ENA]
¡û
>W1610897269
LRVN01000081
Gammaproteobacteria
Escherichia coli [LRVN]
217573
217649
+
Arg
TCT
[ENA]
¡û
>W1610898357
LRWC01000093
Gammaproteobacteria
Escherichia coli [LRWC]
217579
217655
+
Arg
TCT
[ENA]
¡û
>W1610898530
LRWE01000074
Gammaproteobacteria
Escherichia coli [LRWE]
412106
412030
-
Arg
TCT
[ENA]
¡û
>W1610898913
LRWJ01000048
Gammaproteobacteria
Escherichia coli [LRWJ]
217570
217646
+
Arg
TCT
[ENA]
¡û
>W1610899140
LRWM01000055
Gammaproteobacteria
Escherichia coli [LRWM]
29471
29395
-
Arg
TCT
[ENA]
¡û
>W1610918156
LSNY01000170
Gammaproteobacteria
Escherichia coli [LSNY]
2259
2183
-
Arg
TCT
[ENA]
¡û
>W1710001541
ADIX01000021
Gammaproteobacteria
Escherichia coli H378 [ADIX]
101872
101948
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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