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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282689 (97 seq.)
>W1710799939
LJVG01000042
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
137718
137793
+
Phe
GAA
[ENA]
¡û
>W1710799941
LJVG01000042
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
128289
128214
-
Phe
GAA
[ENA]
¡û
>W1710804012
LJYX01000019
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
165784
165859
+
Phe
GAA
[ENA]
¡û
>W1710804014
LJYX01000019
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
156266
156191
-
Phe
GAA
[ENA]
¡û
>W131177245
ARKQ01000037
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
178606
178681
+
Phe
GAA
[ENA]
¡û
>W131177246
ARKQ01000037
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
168697
168622
-
Phe
GAA
[ENA]
¡û
>W1711624679
MPHL01000010
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
25875
25950
+
Phe
GAA
[ENA]
¡û
>W1711624682
MPHL01000010
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
6559
6484
-
Phe
GAA
[ENA]
¡û
>W1711767412
MUZU01000020
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
18359
18434
+
Phe
GAA
[ENA]
¡û
>W1711767414
MUZU01000020
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
223
148
-
Phe
GAA
[ENA]
¡û
>C006817
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
4364104
4364179
+
Phe
GAA
[Ensembl]
¡û
>C006829
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
4355573
4355498
-
Phe
GAA
[Ensembl]
¡û
>WENV182542808
OJAZ01002813
[OJAZ] seawater metagenome; Sea water
4111
4186
+
Phe
GAA
[ENA]
¢þ
>WENV182542859
OJAZ01004286
[OJAZ] seawater metagenome; Sea water
1121
1196
+
Phe
GAA
[ENA]
¢þ
>WENV182543459
OJBB01000403
[OJBB] seawater metagenome; Sea water
10588
10513
-
Phe
GAA
[ENA]
¢þ
>WENV182543508
OJBB01001509
[OJBB] seawater metagenome; Sea water
3744
3669
-
Phe
GAA
[ENA]
¢þ
>WENV182547095
OJBR01000938
[OJBR] seawater metagenome; Sea water
8006
8081
+
Phe
GAA
[ENA]
¢þ
>WENV182554002
OJCS01001610
[OJCS] seawater metagenome; Sea water
81
156
+
Phe
GAA
[ENA]
¢þ
>WENV182554621
OJCW01000202
[OJCW] seawater metagenome; Sea water
21674
21599
-
Phe
GAA
[ENA]
¢þ
>WENV182558978
OJDN01029222
[OJDN] seawater metagenome; Sea water
143
218
+
Phe
GAA
[ENA]
¢þ
>WENV182559115
OJDO01001457
[OJDO] seawater metagenome; Sea water
718
643
-
Phe
GAA
[ENA]
¢þ
>WENV182560409
OJDU01000579
[OJDU] seawater metagenome; Sea water
4934
5009
+
Phe
GAA
[ENA]
¢þ
>WENV182561324
OJDV01042248
[OJDV] seawater metagenome; Sea water
432
507
+
Phe
GAA
[ENA]
¢þ
>WENV182567403
OJEO01000556
[OJEO] seawater metagenome; Sea water
9297
9372
+
Phe
GAA
[ENA]
¢þ
>WENV182567785
OJEP01000237
[OJEP] seawater metagenome; Sea water
4
79
+
Phe
GAA
[ENA]
¢þ
>WENV182568902
OJEX01000841
[OJEX] seawater metagenome; Sea water
4
79
+
Phe
GAA
[ENA]
¢þ
>WENV182575350
OJFU01007792
[OJFU] seawater metagenome; Sea water
759
834
+
Phe
GAA
[ENA]
¢þ
>WENV182575667
OJFV01006467
[OJFV] seawater metagenome; Sea water
708
633
-
Phe
GAA
[ENA]
¢þ
>WENV182576932
OJGB01000979
[OJGB] seawater metagenome; Sea water
657
582
-
Phe
GAA
[ENA]
¢þ
>WENV182578586
OJGO01001935
[OJGO] seawater metagenome; Sea water
1178
1103
-
Phe
GAA
[ENA]
¢þ
>WENV182578587
OJGO01001937
[OJGO] seawater metagenome; Sea water
1192
1117
-
Phe
GAA
[ENA]
¢þ
>WENV182579745
OJGT01000220
[OJGT] seawater metagenome; Sea water
3878
3953
+
Phe
GAA
[ENA]
¢þ
>WENV182585271
OJHH01006014
[OJHH] seawater metagenome; Sea water
2294
2369
+
Phe
GAA
[ENA]
¢þ
>WENV182586627
OJHK01001984
[OJHK] seawater metagenome; Sea water
244
169
-
Phe
GAA
[ENA]
¢þ
>WENV182588182
OJHO01018888
[OJHO] seawater metagenome; Sea water
571
496
-
Phe
GAA
[ENA]
¢þ
>WENV182588286
OJHR01000049
[OJHR] seawater metagenome; Sea water
3599
3524
-
Phe
GAA
[ENA]
¢þ
>WENV183055757
OLHF01006560
[OLHF] seawater metagenome; Sea water
162
87
-
Phe
GAA
[ENA]
¢þ
>WENV183056157
OLHI01000410
[OLHI] seawater metagenome; Sea water
4254
4179
-
Phe
GAA
[ENA]
¢þ
>WENV183057744
OLHM01002508
[OLHM] seawater metagenome; Sea water
2356
2281
-
Phe
GAA
[ENA]
¢þ
>WENV183057786
OLHM01004672
[OLHM] seawater metagenome; Sea water
1192
1117
-
Phe
GAA
[ENA]
¢þ
>WENV183064809
OLII01000871
[OLII] seawater metagenome; Sea water
3635
3560
-
Phe
GAA
[ENA]
¢þ
>WENV170304834
CESI01083179
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
225
150
-
Phe
GAA
[ENA]
¢þ
>WENV170646819
JQIA01003825
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
7935
8009
+
Phe
GAA
[ENA]
¢þ
>WENV170646820
JQIA01003825
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
72
-1
-
Phe
GAA
[ENA]
¢þ
>WENV170646893
JQIA01005145
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
6782
6854
+
Phe
GAA
[ENA]
¢þ
>WENV170704260
LLEJ01000816
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
3493
3568
+
Phe
GAA
[ENA]
¢þ
>WENV170780392
MAAB01000180
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
23
98
+
Phe
GAA
[ENA]
¢þ
>WENV170780394
MAAB01000180
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4153
4228
+
Phe
GAA
[ENA]
¢þ
>WENV170780606
MAAB01007867
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
10598
10673
+
Phe
GAA
[ENA]
¢þ
>WENV170780983
MAAB01028910
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
38111
38186
+
Phe
GAA
[ENA]
¢þ
>WENV170780985
MAAB01028910
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
28060
27985
-
Phe
GAA
[ENA]
¢þ
>WENV170781029
MAAB01029107
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
15609
15534
-
Phe
GAA
[ENA]
¢þ
>WENV170781032
MAAB01029126
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
7816
7891
+
Phe
GAA
[ENA]
¢þ
>WENV170781056
MAAB01029222
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
23290
23215
-
Phe
GAA
[ENA]
¢þ
>WENV170781064
MAAB01029228
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
53019
52944
-
Phe
GAA
[ENA]
¢þ
>WENV170781099
MAAB01029403
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
18941
19016
+
Phe
GAA
[ENA]
¢þ
>WENV170781100
MAAB01029403
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
9308
9233
-
Phe
GAA
[ENA]
¢þ
>WENV170781177
MAAB01029621
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
41660
41585
-
Phe
GAA
[ENA]
¢þ
>WENV170781231
MAAB01029746
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
10320
10245
-
Phe
GAA
[ENA]
¢þ
>WENV170781262
MAAB01030461
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
11967
11892
-
Phe
GAA
[ENA]
¢þ
>WENV170782463
MAAC01010106
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
16835
16910
+
Phe
GAA
[ENA]
¢þ
>WENV170782465
MAAC01010106
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
6818
6743
-
Phe
GAA
[ENA]
¢þ
>WENV170782538
MAAC01010188
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
35652
35727
+
Phe
GAA
[ENA]
¢þ
>WENV170782540
MAAC01010188
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
19875
19800
-
Phe
GAA
[ENA]
¢þ
>WENV170782901
MAAC01011936
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2529
2454
-
Phe
GAA
[ENA]
¢þ
>WENV170782935
MAAC01012099
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
42016
42091
+
Phe
GAA
[ENA]
¢þ
>WENV170782937
MAAC01012099
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
31225
31150
-
Phe
GAA
[ENA]
¢þ
>WENV170783148
MAAC01014399
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1974
1899
-
Phe
GAA
[ENA]
¢þ
>WENV170783149
MAAC01014452
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
984
909
-
Phe
GAA
[ENA]
¢þ
>WENV170783246
MAAC01015313
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
6075
6000
-
Phe
GAA
[ENA]
¢þ
>WENV170783961
MAAC01020147
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
405
480
+
Phe
GAA
[ENA]
¢þ
>WENV170783969
MAAC01020193
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
9540
9615
+
Phe
GAA
[ENA]
¢þ
>WENV170827522
MDSY01130780
[MDSY] marine metagenome; seawater
6108
6183
+
Phe
GAA
[ENA]
¢þ
>C191130459
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
1709134
1709209
+
Phe
GAA
-
¡û
>C191130482
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
1695398
1695323
-
Phe
GAA
-
¡û
>W1810155079
PJAI01000022
Gammaproteobacteria
Colwellia echini A3T [PJAI]
599793
599868
+
Phe
GAA
[ENA]
¡û
>W1810155080
PJAI01000022
Gammaproteobacteria
Colwellia echini A3T [PJAI]
592267
592192
-
Phe
GAA
[ENA]
¡û
>W1810155387
PJAQ01000068
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
291731
291806
+
Phe
GAA
[ENA]
¡û
>W1810155392
PJAQ01000068
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
283464
283389
-
Phe
GAA
[ENA]
¡û
>W1810155528
PJAU01000024
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
303
228
-
Phe
GAA
[ENA]
¡û
>W1810155557
PJAU01000048
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
9416
9491
+
Phe
GAA
[ENA]
¡û
>W1810156035
PJBA01000018
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
291088
291163
+
Phe
GAA
[ENA]
¡û
>W1810156046
PJBA01000018
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
282820
282745
-
Phe
GAA
[ENA]
¡û
>W1810735888
QOLD01000051
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
4555
4630
+
Phe
GAA
[ENA]
¡û
>W1810735906
QOLD01000070
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
131440
131365
-
Phe
GAA
[ENA]
¡û
>W1511322908
JQEC01000057
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
105998
106073
+
Phe
GAA
[ENA]
¡û
>W1511322909
JQEC01000057
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
96700
96625
-
Phe
GAA
[ENA]
¡û
>W1511322933
JQED01000003
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
405013
405088
+
Phe
GAA
[ENA]
¡û
>W1511322934
JQED01000003
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
396383
396308
-
Phe
GAA
[ENA]
¡û
>C161052256
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
3335836
3335911
+
Phe
GAA
[Ensembl]
¡û
>C161052266
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
3326409
3326334
-
Phe
GAA
[Ensembl]
¡û
>W1610663896
LJVG01000042
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
137718
137793
+
Phe
GAA
[ENA]
¡û
>W1610663898
LJVG01000042
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
128289
128214
-
Phe
GAA
[ENA]
¡û
>W1610667869
LJYX01000019
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
165784
165859
+
Phe
GAA
[ENA]
¡û
>W1610667871
LJYX01000019
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
156266
156191
-
Phe
GAA
[ENA]
¡û
>W1710087339
BDQM01000009
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
22749
22824
+
Phe
GAA
[ENA]
¡û
>W1710087340
BDQM01000009
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
13320
13245
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK