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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282696 (65 seq.)
>W1710805253
LJZW01000009
Gammaproteobacteria
Xylella fastidiosa [LJZW]
29722
29797
+
Phe
GAA
[ENA]
¡û
>W1710808082
LKDK01000017
Gammaproteobacteria
Xylella fastidiosa subsp. pauca [LKDK]
27759
27834
+
Phe
GAA
[ENA]
¡û
>W1710809626
LKES01000004
Gammaproteobacteria
Xylella fastidiosa [LKES]
27784
27859
+
Phe
GAA
[ENA]
¡û
>W1710868944
LMJN01000001
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
1451047
1450972
-
Phe
GAA
[ENA]
¡û
>W1711055821
LRVF01000102
Gammaproteobacteria
Xylella fastidiosa [LRVF]
33126
33051
-
Phe
GAA
[ENA]
¡û
>W1711055843
LRVG01000019
Gammaproteobacteria
Xylella fastidiosa [LRVG]
33071
32996
-
Phe
GAA
[ENA]
¡û
>W1711055907
LRVH01000090
Gammaproteobacteria
Xylella fastidiosa [LRVH]
27800
27875
+
Phe
GAA
[ENA]
¡û
>W1711055932
LRVI01000007
Gammaproteobacteria
Xylella fastidiosa [LRVI]
27887
27962
+
Phe
GAA
[ENA]
¡û
>W1711056008
LRVJ01000105
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
32788
32713
-
Phe
GAA
[ENA]
¡û
>W1711077992
LSMJ01000001
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa [LSMJ]
314614
314689
+
Phe
GAA
[ENA]
¡û
>W1711134778
LUYA01000006
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYA]
88714
88639
-
Phe
GAA
[ENA]
¡û
>W1711134834
LUYB01000008
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYB]
29872
29947
+
Phe
GAA
[ENA]
¡û
>W1711134886
LUYC01000009
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYC]
26296
26371
+
Phe
GAA
[ENA]
¡û
>W1711618100
MPAZ01000031
Gammaproteobacteria
Xylella fastidiosa [MPAZ]
28038
28113
+
Phe
GAA
[ENA]
¡û
>W131226645
AUEN01000001
Gammaproteobacteria
Lysobacter sp. URHA0019 [AUEN]
1350677
1350752
+
Phe
GAA
[ENA]
¡û
>C171113940
CP020870
Gammaproteobacteria
Xylella fastidiosa subsp. pauca De Donno [CP020870]
306630
306705
+
Phe
GAA
-
¡û
>W131221331
AUAJ01000012
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ATCC 35871 [AUAJ]
29681
29756
+
Phe
GAA
[ENA]
¡û
>C027192
AE009442
Gammaproteobacteria
Xylella fastidiosa Temecula1 [AE009442]
307078
307153
+
Phe
GAA
[Ensembl]
¡û
>w001635
AAAM03000002
Gammaproteobacteria
Xylella fastidiosa Ann-1 [AAAM]
148728
148803
+
Phe
GAA
[ENA]
¡û
>w001633
AAAM03000002
Gammaproteobacteria
Xylella fastidiosa Ann-1 [AAAM]
32484
32559
+
Phe
GAA
[ENA]
¡û
>w001611
AAAL02000004
Gammaproteobacteria
Xylella fastidiosa Dixon [AAAL]
173207
173135
-
Phe
GAA
[ENA]
¡û
>W141096993
AVGA01000006
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex Griffin-1 [AVGA]
70181
70106
-
Phe
GAA
[ENA]
¡û
>W141148582
AWYH01000006
Gammaproteobacteria
Xylella fastidiosa 32 [AWYH]
27749
27824
+
Phe
GAA
[ENA]
¡û
>W141152275
AXBS01000007
Gammaproteobacteria
Xylella fastidiosa 6c [AXBS]
27747
27822
+
Phe
GAA
[ENA]
¡û
>W141153676
AXDP01000018
Gammaproteobacteria
Xylella fastidiosa Mul-MD [AXDP]
64993
64918
-
Phe
GAA
[ENA]
¡û
>C08011536
CP000941
Gammaproteobacteria
Xylella fastidiosa M12 [CP000941]
303821
303896
+
Phe
GAA
[Ensembl]
¡û
>WENV182944321
OKVI01016295
[OKVI] human gut metagenome; human gut
455
530
+
Phe
GAA
[ENA]
¢þ
>C08011585
CP001011
Gammaproteobacteria
Xylella fastidiosa M23 [CP001011]
306956
307031
+
Phe
GAA
[Ensembl]
¡û
>WENV183732391
PJTX01000093
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
24033
23958
-
Phe
GAA
[ENA]
¢þ
>WENV183734820
PJUA01000031
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
114590
114515
-
Phe
GAA
[ENA]
¢þ
>WENV170011519
APMI01071592
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
502
427
-
Phe
GAA
[ENA]
¢þ
>C181007938
CP009790
Gammaproteobacteria
Xylella fastidiosa U24D [CP009790]
308638
308713
+
Phe
GAA
-
¡û
>C181008082
CP009829
Gammaproteobacteria
Xylella fastidiosa 3124 [CP009829]
306272
306347
+
Phe
GAA
-
¡û
>C181020188
CP016608
Gammaproteobacteria
Xylella fastidiosa Salento-1 [CP016608]
306626
306701
+
Phe
GAA
-
¡û
>C181020237
CP016610
Gammaproteobacteria
Xylella fastidiosa Salento-2 [CP016610]
306639
306714
+
Phe
GAA
-
¡û
>W141699107
JMHP01000008
Gammaproteobacteria
Xylella fastidiosa [JMHP]
89530
89455
-
Phe
GAA
[ENA]
¡û
>W1911582001
PHFP01000006
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8071 [PHFP]
27804
27879
+
Phe
GAA
[ENA]
¡û
>W1911582059
PHFQ01000006
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP7969 [PHFQ]
88525
88450
-
Phe
GAA
[ENA]
¡û
>W1911582107
PHFR01000008
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP7970 [PHFR]
88556
88481
-
Phe
GAA
[ENA]
¡û
>W1911582144
PHFS01000006
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex CFBP8078 [PHFS]
85777
85702
-
Phe
GAA
[ENA]
¡û
>W1911582203
PHFT01000007
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8082 [PHFT]
88522
88447
-
Phe
GAA
[ENA]
¡û
>W1911582247
PHFU01000007
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8351 [PHFU]
89643
89568
-
Phe
GAA
[ENA]
¡û
>W1911582289
PHFV01000010
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi CFBP8356 [PHFV]
68246
68171
-
Phe
GAA
[ENA]
¡û
>W1911710189
QPQV01000126
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ESVL [QPQV]
27809
27884
+
Phe
GAA
[ENA]
¡û
>W1911710239
QPQW01000136
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex IVIA5901 [QPQW]
27809
27884
+
Phe
GAA
[ENA]
¡û
>W1911726697
QTJS01000007
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa XYL2055 [QTJS]
67010
66935
-
Phe
GAA
[ENA]
¡û
>W1911726747
QTJT01000007
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa XYL1732 [QTJT]
49256
49181
-
Phe
GAA
[ENA]
¡û
>W1911752141
QWLC01000099
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa IVIA5235 [QWLC]
75511
75436
-
Phe
GAA
[ENA]
¡û
>C151010996
CP006696
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi Ann-1 [CP006696]
507330
507405
+
Phe
GAA
[Ensembl]
¡û
>C151011699
CP006740
Gammaproteobacteria
Xylella fastidiosa MUL0034 [CP006740]
2105207
2105132
-
Phe
GAA
[Ensembl]
¡û
>W1511320724
JQAP01000001
Gammaproteobacteria
Xylella fastidiosa ATCC 35879 [JQAP]
306963
307038
+
Phe
GAA
[ENA]
¡û
>C11123965
CP002165
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa GB514 [CP002165]
1427047
1427122
+
Phe
GAA
[Ensembl]
¡û
>W1511436632
JUJW01000001
Gammaproteobacteria
Xylella fastidiosa CoDiRO [JUJW]
314228
314303
+
Phe
GAA
[ENA]
¡û
>W11158552
AFDJ01000030
Gammaproteobacteria
Xylella fastidiosa EB92.1 [AFDJ]
78504
78429
-
Phe
GAA
[ENA]
¡û
>W1610669110
LJZW01000009
Gammaproteobacteria
Xylella fastidiosa [LJZW]
29722
29797
+
Phe
GAA
[ENA]
¡û
>W1610672186
LKDK01000017
Gammaproteobacteria
Xylella fastidiosa subsp. pauca [LKDK]
27759
27834
+
Phe
GAA
[ENA]
¡û
>W1610673732
LKES01000004
Gammaproteobacteria
Xylella fastidiosa [LKES]
27784
27859
+
Phe
GAA
[ENA]
¡û
>W1610731290
LMJN01000001
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
1451047
1450972
-
Phe
GAA
[ENA]
¡û
>W1610896867
LRVF01000102
Gammaproteobacteria
Xylella fastidiosa [LRVF]
33126
33051
-
Phe
GAA
[ENA]
¡û
>W1610896889
LRVG01000019
Gammaproteobacteria
Xylella fastidiosa [LRVG]
33071
32996
-
Phe
GAA
[ENA]
¡û
>W1610896953
LRVH01000090
Gammaproteobacteria
Xylella fastidiosa [LRVH]
27800
27875
+
Phe
GAA
[ENA]
¡û
>W1610896978
LRVI01000007
Gammaproteobacteria
Xylella fastidiosa [LRVI]
27887
27962
+
Phe
GAA
[ENA]
¡û
>W1610897054
LRVJ01000105
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
32788
32713
-
Phe
GAA
[ENA]
¡û
>W1610917008
LSMJ01000001
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa [LSMJ]
314614
314689
+
Phe
GAA
[ENA]
¡û
>W1710585669
FQWN01000007
Gammaproteobacteria
Xylella fastidiosa [FQWN]
28416
28491
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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