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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282700 (108 seq.)
>W1710811857
LKIW01000042
Betaproteobacteria
Chromobacterium subtsugae violaceum [LKIW]
22364
22289
-
Lys
CTT
[ENA]
¡û
>W1710811859
LKIW01000042
Betaproteobacteria
Chromobacterium subtsugae violaceum [LKIW]
22151
22076
-
Lys
CTT
[ENA]
¡û
>W1710867075
LMHZ01000012
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
279581
279656
+
Lys
CTT
[ENA]
¡û
>W1711005504
LQNP01000012
Betaproteobacteria
Chromobacterium sp. F49 [LQNP]
13439
13364
-
Lys
CTT
[ENA]
¡û
>W1711005506
LQNP01000012
Betaproteobacteria
Chromobacterium sp. F49 [LQNP]
13226
13151
-
Lys
CTT
[ENA]
¡û
>W1711135912
LUZQ01000002
Betaproteobacteria
Burkholderiales bacterium Beta_01 [LUZQ]
31822
31897
+
Lys
CTT
[ENA]
¡û
>W131229702
AUGZ01000006
Betaproteobacteria
Paludibacterium yongneupense DSM 18731 [AUGZ]
182143
182218
+
Lys
CTT
[ENA]
¡û
>W1711484397
MKCR01000004
Betaproteobacteria
Chromobacterium amazonense [MKCR]
15240
15165
-
Lys
CTT
[ENA]
¡û
>W1711484398
MKCR01000004
Betaproteobacteria
Chromobacterium amazonense [MKCR]
15084
15009
-
Lys
CTT
[ENA]
¡û
>W1711484481
MKCS01000001
Betaproteobacteria
Chromobacterium sphagni Feb-37 [MKCS]
1879183
1879258
+
Lys
CTT
[ENA]
¡û
>W1711484483
MKCS01000001
Betaproteobacteria
Chromobacterium sphagni Feb-37 [MKCS]
1879396
1879471
+
Lys
CTT
[ENA]
¡û
>W1711484633
MKCT01000059
Betaproteobacteria
Chromobacterium sphagni 14B-1 [MKCT]
24598
24673
+
Lys
CTT
[ENA]
¡û
>W1711484635
MKCT01000059
Betaproteobacteria
Chromobacterium sphagni 14B-1 [MKCT]
24811
24886
+
Lys
CTT
[ENA]
¡û
>W1711664385
MQZY01000132
Betaproteobacteria
Chromobacterium aquaticum [MQZY]
94
169
+
Lys
CTT
[ENA]
¡û
>W1711664387
MQZY01000132
Betaproteobacteria
Chromobacterium aquaticum [MQZY]
299
374
+
Lys
CTT
[ENA]
¡û
>W1711664417
MQZZ01000132
Betaproteobacteria
Chromobacterium subtsugae [MQZZ]
94
169
+
Lys
CTT
[ENA]
¡û
>W1711664419
MQZZ01000132
Betaproteobacteria
Chromobacterium subtsugae [MQZZ]
299
374
+
Lys
CTT
[ENA]
¡û
>W1711747356
MUKQ01000004
Betaproteobacteria
Chromobacterium violaceum [MUKQ]
181076
181151
+
Lys
CTT
[ENA]
¡û
>W1711747358
MUKQ01000004
Betaproteobacteria
Chromobacterium violaceum [MUKQ]
181291
181366
+
Lys
CTT
[ENA]
¡û
>W1711747419
MUKR01000001
Betaproteobacteria
Chromobacterium violaceum [MUKR]
471282
471357
+
Lys
CTT
[ENA]
¡û
>W1711747421
MUKR01000001
Betaproteobacteria
Chromobacterium violaceum [MUKR]
471497
471572
+
Lys
CTT
[ENA]
¡û
>W1711747541
MUKS01000008
Betaproteobacteria
Chromobacterium violaceum [MUKS]
119819
119894
+
Lys
CTT
[ENA]
¡û
>W1711747543
MUKS01000008
Betaproteobacteria
Chromobacterium violaceum [MUKS]
120034
120109
+
Lys
CTT
[ENA]
¡û
>W1711747799
MUKW01000002
Betaproteobacteria
Chromobacterium violaceum [MUKW]
54456
54381
-
Lys
CTT
[ENA]
¡û
>W1711747801
MUKW01000002
Betaproteobacteria
Chromobacterium violaceum [MUKW]
54241
54166
-
Lys
CTT
[ENA]
¡û
>W1711747878
MUKX01000002
Betaproteobacteria
Chromobacterium violaceum [MUKX]
54456
54381
-
Lys
CTT
[ENA]
¡û
>W1711747880
MUKX01000002
Betaproteobacteria
Chromobacterium violaceum [MUKX]
54241
54166
-
Lys
CTT
[ENA]
¡û
>W1712081912
NHOO01000002
Betaproteobacteria
Chromobacterium violaceum [NHOO]
196371
196446
+
Lys
CTT
[ENA]
¡û
>W1712081914
NHOO01000002
Betaproteobacteria
Chromobacterium violaceum [NHOO]
196586
196661
+
Lys
CTT
[ENA]
¡û
>C171066244
CP017707
Betaproteobacteria
Chromobacterium vaccinii 21-1 [CP017707]
3485484
3485559
+
Lys
CTT
-
¡û
>C171066246
CP017707
Betaproteobacteria
Chromobacterium vaccinii 21-1 [CP017707]
3485698
3485773
+
Lys
CTT
-
¡û
>C007326
AE016825
Betaproteobacteria
Chromobacterium violaceum ATCC 12472 [AE016825]
4587116
4587041
-
Lys
CTT
[Ensembl]
¡û
>C007328
AE016825
Betaproteobacteria
Chromobacterium violaceum ATCC 12472 [AE016825]
4586901
4586826
-
Lys
CTT
[Ensembl]
¡û
>W141106108
AVPH01000029
Betaproteobacteria
Pseudogulbenkiania ferrooxidans EGD-HP2 [AVPH]
2304
2229
-
Lys
CTT
[ENA]
¡û
>W141106110
AVPH01000029
Betaproteobacteria
Pseudogulbenkiania ferrooxidans EGD-HP2 [AVPH]
2089
2014
-
Lys
CTT
[ENA]
¡û
>WENV170009493
APMI01000420
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
85033
84958
-
Lys
CTT
[ENA]
¢þ
>WENV170573138
FLYJ01000493
[FLYJ] hot springs metagenome; Sediment
2428
2503
+
Lys
CTT
[ENA]
¢þ
>C181062361
CP022344
Betaproteobacteria
Chromobacterium vaccinii XC0014 [CP022344]
1505762
1505837
+
Lys
CTT
-
¡û
>C181062363
CP022344
Betaproteobacteria
Chromobacterium vaccinii XC0014 [CP022344]
1505976
1506051
+
Lys
CTT
-
¡û
>C181071866
CP022736
Betaproteobacteria
Herbaspirillum sp. meg3 [CP022736]
1662339
1662264
-
Lys
CTT
-
¡û
>C181093214
CP024028
Betaproteobacteria
Chromobacterium violaceum CV1192 [CP024028]
4234805
4234730
-
Lys
CTT
-
¡û
>C181093216
CP024028
Betaproteobacteria
Chromobacterium violaceum CV1192 [CP024028]
4234590
4234515
-
Lys
CTT
-
¡û
>C181117103
CP025429
Betaproteobacteria
Chromobacterium sp. ATCC 53434 [CP025429]
4322016
4321941
-
Lys
CTT
-
¡û
>C181117105
CP025429
Betaproteobacteria
Chromobacterium sp. ATCC 53434 [CP025429]
4321801
4321726
-
Lys
CTT
-
¡û
>C181179610
CP029495
Betaproteobacteria
Chromobacterium phragmitis IIBBL 112-1 [CP029495]
2131388
2131463
+
Lys
CTT
-
¡û
>C181179612
CP029495
Betaproteobacteria
Chromobacterium phragmitis IIBBL 112-1 [CP029495]
2131602
2131677
+
Lys
CTT
-
¡û
>C181180284
CP029554
Betaproteobacteria
Chromobacterium phragmitis IIBBL 274-1 [CP029554]
3273421
3273496
+
Lys
CTT
-
¡û
>C181180286
CP029554
Betaproteobacteria
Chromobacterium phragmitis IIBBL 274-1 [CP029554]
3273635
3273710
+
Lys
CTT
-
¡û
>C191199036
LR134182
Betaproteobacteria
Chromobacterium violaceum NCTC9695 [LR134182]
4569155
4569080
-
Lys
CTT
-
¡û
>C191199038
LR134182
Betaproteobacteria
Chromobacterium violaceum NCTC9695 [LR134182]
4568940
4568865
-
Lys
CTT
-
¡û
>W141779076
JONM01000029
Betaproteobacteria
Andreprevotia chitinilytica DSM 18519 [JONM]
11879
11954
+
Lys
CTT
[ENA]
¡û
>W1910803553
MTBD01000036
Betaproteobacteria
Chromobacterium amazonense 56AF [MTBD]
46292
46217
-
Lys
CTT
[ENA]
¡û
>W1910803554
MTBD01000036
Betaproteobacteria
Chromobacterium amazonense 56AF [MTBD]
46136
46061
-
Lys
CTT
[ENA]
¡û
>W1911802762
QYUN01000002
Betaproteobacteria
Noviherbaspirillum cavernae K2R10-39 [QYUN]
979465
979390
-
Lys
CTT
[ENA]
¡û
>W1911802809
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
1108570
1108495
-
Lys
CTT
[ENA]
¡û
>W1810184672
PKBZ01000001
Betaproteobacteria
Chromobacterium violaceum ATCC 315322 [PKBZ]
3123367
3123442
+
Lys
CTT
[ENA]
¡û
>W1810184674
PKBZ01000001
Betaproteobacteria
Chromobacterium violaceum ATCC 315322 [PKBZ]
3123580
3123655
+
Lys
CTT
[ENA]
¡û
>W1810240310
PPTF01000028
Betaproteobacteria
Chromobacterium sinusclupearum MWU13-2610 [PPTF]
11690
11765
+
Lys
CTT
[ENA]
¡û
>W1810240311
PPTF01000028
Betaproteobacteria
Chromobacterium sinusclupearum MWU13-2610 [PPTF]
11846
11921
+
Lys
CTT
[ENA]
¡û
>W10116333
ADNR01000033
Betaproteobacteria
Burkholderia sp. Ch1-1 [ADNR]
7297
7222
-
Lys
CTT
[ENA]
¡û
>W1511399983
JTGE01000029
Betaproteobacteria
Chromobacterium piscinae ND17 [JTGE]
113838
113913
+
Lys
CTT
[ENA]
¡û
>W1511399984
JTGE01000029
Betaproteobacteria
Chromobacterium piscinae ND17 [JTGE]
113993
114068
+
Lys
CTT
[ENA]
¡û
>W11121002
ADNR01000033
Betaproteobacteria
Burkholderia sp. Ch1-1 [ADNR]
7297
7222
-
Lys
CTT
[ENA]
¡û
>W1511480665
JWJG01000028
Betaproteobacteria
Noviherbaspirillum autotrophicum TSA66 [JWJG]
5059002
5058927
-
Lys
CTT
[ENA]
¡û
>W1511480967
JWJN01000001
Betaproteobacteria
Chromobacterium subtsugae F49 [JWJN]
187409
187484
+
Lys
CTT
[ENA]
¡û
>W1511480969
JWJN01000001
Betaproteobacteria
Chromobacterium subtsugae F49 [JWJN]
187622
187697
+
Lys
CTT
[ENA]
¡û
>W1511484291
JWPW01000033
Betaproteobacteria
Chromobacterium violaceum GN5 [JWPW]
10578
10503
-
Lys
CTT
[ENA]
¡û
>W1511484293
JWPW01000033
Betaproteobacteria
Chromobacterium violaceum GN5 [JWPW]
10363
10288
-
Lys
CTT
[ENA]
¡û
>W1511525792
JYGI01000002
Betaproteobacteria
Chromobacterium violaceum L_1B5_1 [JYGI]
10514
10439
-
Lys
CTT
[ENA]
¡û
>W1511525794
JYGI01000002
Betaproteobacteria
Chromobacterium violaceum L_1B5_1 [JYGI]
10299
10224
-
Lys
CTT
[ENA]
¡û
>W1511544141
JZJJ01000015
Betaproteobacteria
Chromobacterium vaccinii MWU328 [JZJJ]
41781
41706
-
Lys
CTT
[ENA]
¡û
>W1511544143
JZJJ01000015
Betaproteobacteria
Chromobacterium vaccinii MWU328 [JZJJ]
41567
41492
-
Lys
CTT
[ENA]
¡û
>W1511544314
JZJL01000072
Betaproteobacteria
Chromobacterium vaccinii MWU205 [JZJL]
106
31
-
Lys
CTT
[ENA]
¡û
>W1511544316
JZJL01000097
Betaproteobacteria
Chromobacterium vaccinii MWU205 [JZJL]
5925
5850
-
Lys
CTT
[ENA]
¡û
>W1511622776
LCWO01000001
Betaproteobacteria
Chromobacterium subtsugae MWU3525 [LCWO]
365349
365424
+
Lys
CTT
[ENA]
¡û
>W1511622778
LCWO01000001
Betaproteobacteria
Chromobacterium subtsugae MWU3525 [LCWO]
365562
365637
+
Lys
CTT
[ENA]
¡û
>W1511622880
LCWP01000009
Betaproteobacteria
Chromobacterium subtsugae MWU2920 [LCWP]
177237
177312
+
Lys
CTT
[ENA]
¡û
>W1511622882
LCWP01000009
Betaproteobacteria
Chromobacterium subtsugae MWU2920 [LCWP]
177450
177525
+
Lys
CTT
[ENA]
¡û
>W1511622956
LCWQ01000009
Betaproteobacteria
Chromobacterium subtsugae MWU2576 [LCWQ]
132137
132212
+
Lys
CTT
[ENA]
¡û
>W1511622958
LCWQ01000009
Betaproteobacteria
Chromobacterium subtsugae MWU2576 [LCWQ]
132350
132425
+
Lys
CTT
[ENA]
¡û
>W1511622999
LCWR01000001
Betaproteobacteria
Chromobacterium subtsugae MWU2387 [LCWR]
42796
42871
+
Lys
CTT
[ENA]
¡û
>W1511623001
LCWR01000001
Betaproteobacteria
Chromobacterium subtsugae MWU2387 [LCWR]
43009
43084
+
Lys
CTT
[ENA]
¡û
>W1511640857
LDUM01000003
Betaproteobacteria
Chromobacterium violaceum LK6 [LDUM]
55495
55420
-
Lys
CTT
[ENA]
¡û
>W1511640859
LDUM01000003
Betaproteobacteria
Chromobacterium violaceum LK6 [LDUM]
55280
55205
-
Lys
CTT
[ENA]
¡û
>W1511641412
LDUT01000011
Betaproteobacteria
Chromobacterium violaceum LK15 [LDUT]
185741
185816
+
Lys
CTT
[ENA]
¡û
>W1511641414
LDUT01000011
Betaproteobacteria
Chromobacterium violaceum LK15 [LDUT]
185956
186031
+
Lys
CTT
[ENA]
¡û
>W1511641486
LDUU01000003
Betaproteobacteria
Chromobacterium violaceum LK17 [LDUU]
185753
185828
+
Lys
CTT
[ENA]
¡û
>W1511641488
LDUU01000003
Betaproteobacteria
Chromobacterium violaceum LK17 [LDUU]
185968
186043
+
Lys
CTT
[ENA]
¡û
>W1511641779
LDUX01000007
Betaproteobacteria
Chromobacterium violaceum LK30 [LDUX]
185749
185824
+
Lys
CTT
[ENA]
¡û
>W1511641781
LDUX01000007
Betaproteobacteria
Chromobacterium violaceum LK30 [LDUX]
185964
186039
+
Lys
CTT
[ENA]
¡û
>W1511683772
LFLS01000015
Betaproteobacteria
Herbaspirillum autotrophicum IAM 14942 [LFLS]
28575
28500
-
Lys
CTT
[ENA]
¡û
>C121000505
AP012224
Betaproteobacteria
Pseudogulbenkiania sp. NH8B [AP012224]
328772
328847
+
Lys
CTT
[Ensembl]
¡û
>W1610049611
BBFD01000019
Betaproteobacteria
Silvimonas sp. JCM 19000 [BBFD]
11223
11148
-
Lys
CTT
[ENA]
¡û
>W1610506444
FLQX01000171
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
4708
4633
-
Lys
CTT
[ENA]
¡û
>W1610551479
JYKA01000002
Betaproteobacteria
Chromobacterium subtsugae [JYKA]
53888
53813
-
Lys
CTT
[ENA]
¡û
>W1610551481
JYKA01000002
Betaproteobacteria
Chromobacterium subtsugae [JYKA]
53675
53600
-
Lys
CTT
[ENA]
¡û
>W1610576339
LAQT01000010
Betaproteobacteria
Amantichitinum ursilacus [LAQT]
15301
15226
-
Lys
CTT
[ENA]
¡û
>W1610675954
LKIW01000042
Betaproteobacteria
Chromobacterium subtsugae violaceum [LKIW]
22364
22289
-
Lys
CTT
[ENA]
¡û
>W1610675956
LKIW01000042
Betaproteobacteria
Chromobacterium subtsugae violaceum [LKIW]
22151
22076
-
Lys
CTT
[ENA]
¡û
>W1610729421
LMHZ01000012
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
279581
279656
+
Lys
CTT
[ENA]
¡û
>W1610856154
LQNP01000012
Betaproteobacteria
Chromobacterium sp. F49 [LQNP]
13439
13364
-
Lys
CTT
[ENA]
¡û
>W1610856156
LQNP01000012
Betaproteobacteria
Chromobacterium sp. F49 [LQNP]
13226
13151
-
Lys
CTT
[ENA]
¡û
>W1610947032
LUZQ01000002
Betaproteobacteria
Burkholderiales bacterium Beta_01 [LUZQ]
31822
31897
+
Lys
CTT
[ENA]
¡û
>W1710046010
BBFD01000019
Betaproteobacteria
Silvimonas sp. JCM 19000 [BBFD]
11223
11148
-
Lys
CTT
[ENA]
¡û
>W1710498947
FLQX01000171
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
4708
4633
-
Lys
CTT
[ENA]
¡û
>W1710661752
JYKA01000002
Betaproteobacteria
Chromobacterium subtsugae [JYKA]
53888
53813
-
Lys
CTT
[ENA]
¡û
>W1710661754
JYKA01000002
Betaproteobacteria
Chromobacterium subtsugae [JYKA]
53675
53600
-
Lys
CTT
[ENA]
¡û
>W1710694828
LAQT01000010
Betaproteobacteria
Amantichitinum ursilacus [LAQT]
15301
15226
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK